cluster # 9436

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Schistosoma mansoni
cluster # 9436 cluster # 9436 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9436#0 length = 881 sequences # 6

consensus_9436#1 length = 370 sequences # 2
consensus_9436#2 length = 219 sequences # 1

consensusID : consensus_9436#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 881
fasta sequence

                              [AGTTGTATTAACTATATTACAACAAAAAGAAGGTTCTTTGAATCTACATGTGTCTCTATAACATTTTTATACACTCTGTATTGGTCGTATTTGAGATTTAGTGTTGGGAATCCTCGTTATTCTAATCGACAGACAAAGCTCAGGCAGATACTTCTTGTATTGCACACGTTTGTATTCGGTATTGAAATAGGCTTCAAGCTAGCCACTAGCACGCTTATTTGGATATTAAATCCGTGTCACGTTATAACCATGCTACAGATATTACTTTTGGCTTCATCGTCATCTTGGCTTACAACTTTTATTTTTCGAATCCACTTACATATGATGAATGGTCCTTTGTTAGCGTTAACTTTCCCAATATTGAACACTCGTTCTCTACCATTCGAACATATGACCTACTTCGTGCAACATATTCTGATTATTTTAATTCCTGCTAGCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTTAAATACACGAAAGGTGCCTTGGTTATGTCTGAATTCCAATAAACATGATCAGAAATCTGTTATAGAAAGAGTACTTGAATCTAGTTCATCAAATATATCAGGTGGAAAAATCACCTCGTCTTGGTATTGGCCTGATCTATTTCGATATCACACATATCTTGAAGCTGACACCAAAAACAA]

[+] EMBL CD097336             [AGTTGTATTAACTATATTACAACAAAAAGAAGGTTCTTTGAATCTACATGTGTCTCTATAACATTTTTATACACTCTGTATTGGTCGTATTTGAGATTTAGTGTTGGGAATCCTCGTTATTCTAATCGACAGACAAAGCTCAGGCAGATACTTCTTGTATTGCACACGTTTGTATTCGGTATTGAAATAGGCTTCAAGCTAGCCACTAGCACGCTTATTTGGATATTAAATCCGTGTCACGTTATAACCATGCTACAGATATTACTTTTGGCTTCATCGTCATCTTGGCTTACAACTTTTATTTTTCGAATCCACTTACATATGATGAATGGTCCTTTGTTAGCGTTAACTTTCCCAATATTGAACACTCGTTCTCTACCATTCGAACATATGACCTACTTCGTGCAACATATTCTGATTATTTTAATTCCTGCTAGCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGA                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD111564             [                                                                                                    GTGTT GGAATCCTCGTTATTCTAATCGACAGACAAAGCTCAGGCAGATACTTCTTGTATTGCACACGTTTGTATTCGGTATTGAAATAGGCTTCAAGCTAGCCACTAGCACGCTTATTTGGATATTAAATCCGTGTCACGTTATAACCATGCTACAGATATTACTTTTGGCTTCATCGTCATCCTGGCTTACAACTTTTATTTTTCGAATCCACTGACATATGATGAATGGTCCTTTGTTAGCGTTAACTTTCCCAATATTGAACACTCGTTCTCTACCATTCGAACATATGACCTACTTCGTGCAACATATTCTGATTATTTTAATTCCTGCTAGCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTA                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD165164             [                                                                                                                                                        TCTTGTATTGCACACGTTTGTATTCGGTATTGAAATAGGCTTCAAGCTAGCCACTAGCACGCTTATTTGGATATTAAATCCGTGTCACGTTATAACCATGCTACAGATATTACTTTTGGCTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD097366             [                                                                                                                                                                                                                                                                                                                         ACTTACATATGATGAATGGTCCTTTGTTAGCGTTAACTTTCCCAATATTGAACACTCGTTCTCTACCATTCGAACATATGACCTACTTCGTGCGACATATTCTGATTATTTTAATTCCTGCTAGCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTTAAATACACGAAAGGTGCCTTGGTTATGTCTGAATTCCAATAAACATGATCAGAAATCTGTTATAGAAAGAGTACTTGAATCTAGTTCATCAAATATATCAGGTGGAAAAATCACCTCG                                                              ]
[+] EMBL AI975115             [                                                                                                                                                                                                                                                                                                                           TTACATATGATGAATGGTCCTTTGTTAGCGTTAACTTTCCCAATATTGAACACTCGTTCTCTACCATTCGAACATATGACCTACTTCGTGCAACATATTCTGATTATTTTAATTCCTGCTAGCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGAT                                                                                                                                                                                                            ]
[+] EMBL CD121886             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTTAAATACACGAAAGGTGCCTTGGTTATGTCTGAATTCCAATAAACATGATCAGAAATCTGTTATAGAAAGAGTACTTGAATCTAGTTCATCAAATATATCAGGTGGAAAAATCACCTCGTCTTGGTATTGGCCTGATCTATTTCGATATCACACATATCTTGAAGCTGACACCAAAAACAA]




>consensus_9436#0
AGTTGTATTAACTATATTACAACAAAAAGAAGGTTCTTTGAATCTACATGTGTCTCTATA
ACATTTTTATACACTCTGTATTGGTCGTATTTGAGATTTAGTGTTGGGAATCCTCGTTAT
TCTAATCGACAGACAAAGCTCAGGCAGATACTTCTTGTATTGCACACGTTTGTATTCGGT
ATTGAAATAGGCTTCAAGCTAGCCACTAGCACGCTTATTTGGATATTAAATCCGTGTCAC
GTTATAACCATGCTACAGATATTACTTTTGGCTTCATCGTCATCTTGGCTTACAACTTTT
ATTTTTCGAATCCACTTACATATGATGAATGGTCCTTTGTTAGCGTTAACTTTCCCAATA
TTGAACACTCGTTCTCTACCATTCGAACATATGACCTACTTCGTGCAACATATTCTGATT
ATTTTAATTCCTGCTAGCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGAT
GATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTG
CAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGC
GACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATA
TTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTTAAATACACGAAAGGTGCCT
TGGTTATGTCTGAATTCCAATAAACATGATCAGAAATCTGTTATAGAAAGAGTACTTGAA
TCTAGTTCATCAAATATATCAGGTGGAAAAATCACCTCGTCTTGGTATTGGCCTGATCTA
TTTCGATATCACACATATCTTGAAGCTGACACCAAAAACAA

consensusID : consensus_9436#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 370
fasta sequence

                              [GGCTTCATCGTCATCTTGGCTTACAACTTTTATTTTTCGAATCCACTTACATATGATGATTGGTCCTTTGTTAGCGTTAACTTTCCCAATATCGAACACTCGTTCTCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTT]

[+] EMBL CD191716             [GGCTTCATCGTCATCTTGGCTTACAACTTTTATTTTTCGAATCCACTTACATATGATGATTGGTCCTTTGTTAGCGTTAACTTTCCCAATATCGAACACTCGTTCTCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTT]
[+] EMBL CD191843             [GGCTTCATCGTCATCTTGGCTTACAACTTTTATTTTTCGAATCCACTTACATATGATGATTGGTCCTTTGTTAGCGTTAACTTTCCCAATATCGAACACTCGTTCTCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTT]




>consensus_9436#1
GGCTTCATCGTCATCTTGGCTTACAACTTTTATTTTTCGAATCCACTTACATATGATGAT
TGGTCCTTTGTTAGCGTTAACTTTCCCAATATCGAACACTCGTTCTCTTCTTGAATCAGA
GTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTA
TACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATC
TAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTAT
GGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGATTTTTACTTTGTTTT
TGCTTCGGTT

consensusID : consensus_9436#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 219
fasta sequence

                              [CAAAATACAAGAAATTGATAATGAACTGAGCTTTTTTTGGCTATTGTATAAACTTCCGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCC]

[-] EMBL CD170242             [CAAAATACAAGAAATTGATAATGAACTGAGCTTTTTTTGGCTATTGTATAAACTTCCGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCC]




>consensus_9436#2
CAAAATACAAGAAATTGATAATGAACTGAGCTTTTTTTGGCTATTGTATAAACTTCCGTG
AATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGG
TTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACA
ATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9436#0      AGTTGTATTAACTATATTACAACAAAAAGAAGGTTCTTTGAATCTACATGTGTCTCTATA 60
consensus_9436#1      ------------------------------------------------------------
consensus_9436#2      ------------------------------------------------------------
                                                                                  

consensus_9436#0      ACATTTTTATACACTCTGTATTGGTCGTATTTGAGATTTAGTGTTGGGAATCCTCGTTAT 120
consensus_9436#1      ------------------------------------------------------------
consensus_9436#2      ------------------------------------------------------------
                                                                                  

consensus_9436#0      TCTAATCGACAGACAAAGCTCAGGCAGATACTTCTTGTATTGCACACGTTTGTATTCGGT 180
consensus_9436#1      ------------------------------------------------------------
consensus_9436#2      ------------------------------------------------------------
                                                                                  

consensus_9436#0      ATTGAAATAGGCTTCAAGCTAGCCACTAGCACGCTTATTTGGATATTAAATCCGTGTCAC 240
consensus_9436#1      ------------------------------------------------------------
consensus_9436#2      ------------------------------------------------------------
                                                                                  

consensus_9436#0      GTTATAACCATGCTACAGATATTACTTTTGGCTTCATCGTCATCTTGGCTTACAACTTTT 300
consensus_9436#1      -----------------------------GGCTTCATCGTCATCTTGGCTTACAACTTTT 31
consensus_9436#2      ------------------------------------------------------------
                                                                                  

consensus_9436#0      ATTTTTCGAATCCACTTACATATGATGAATGGTCCTTTGTTAGCGTTAACTTTCCCAATA 360
consensus_9436#1      ATTTTTCGAATCCACTTACATATGATGATTGGTCCTTTGTTAGCGTTAACTTTCCCAATA 91
consensus_9436#2      ----------------------------------------CAAAATACAAGAAATTGATA 20
                                                               *   *  *        ***

consensus_9436#0      TTGAACACTCGTTCTCTACCATTCGAACATATGACCTACTTCGTGCAACATATTCTGATT 420
consensus_9436#1      TCGAACACTCGTTCTCT------------------------------------------- 108
consensus_9436#2      ATGAACTGAGCTTTTTTT------------------------------------------ 38
                        ****     ** * *                                           

consensus_9436#0      ATTTTAATTCCTGCTAGCTTCTTGAATCAGAGTA-GTGAATTTTCAGTTGAACCAATTGA 479
consensus_9436#1      -------------------TCTTGAATCAGAGTA-GTGAATTTTCAGTTGAACCAATTGA 148
consensus_9436#2      ----------------GGCTATTGTATAAACTTCCGTGAATTTTCAGTTGAACCAATTGA 82
                                         * *** ** *   *  *************************

consensus_9436#0      TGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCT 539
consensus_9436#1      TGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCT 208
consensus_9436#2      TGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCT 142
                      ************************************************************

consensus_9436#0      GCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAG 599
consensus_9436#1      GCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAG 268
consensus_9436#2      GCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAG 202
                      ************************************************************

consensus_9436#0      CGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAAT 659
consensus_9436#1      CGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAAT 328
consensus_9436#2      CGACCCATTCCCTGGCC------------------------------------------- 219
                      *****************                                           

consensus_9436#0      ATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTTAAATACACGAAAGGTGCC 719
consensus_9436#1      ATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTT------------------ 370
consensus_9436#2      ------------------------------------------------------------
                                                                                  

consensus_9436#0      TTGGTTATGTCTGAATTCCAATAAACATGATCAGAAATCTGTTATAGAAAGAGTACTTGA 779
consensus_9436#1      ------------------------------------------------------------
consensus_9436#2      ------------------------------------------------------------
                                                                                  

consensus_9436#0      ATCTAGTTCATCAAATATATCAGGTGGAAAAATCACCTCGTCTTGGTATTGGCCTGATCT 839
consensus_9436#1      ------------------------------------------------------------
consensus_9436#2      ------------------------------------------------------------
                                                                                  

consensus_9436#0      ATTTCGATATCACACATATCTTGAAGCTGACACCAAAAACAA 881
consensus_9436#1      ------------------------------------------
consensus_9436#2      ------------------------------------------