These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 881 fasta sequence [AGTTGTATTAACTATATTACAACAAAAAGAAGGTTCTTTGAATCTACATGTGTCTCTATAACATTTTTATACACTCTGTATTGGTCGTATTTGAGATTTAGTGTTGGGAATCCTCGTTATTCTAATCGACAGACAAAGCTCAGGCAGATACTTCTTGTATTGCACACGTTTGTATTCGGTATTGAAATAGGCTTCAAGCTAGCCACTAGCACGCTTATTTGGATATTAAATCCGTGTCACGTTATAACCATGCTACAGATATTACTTTTGGCTTCATCGTCATCTTGGCTTACAACTTTTATTTTTCGAATCCACTTACATATGATGAATGGTCCTTTGTTAGCGTTAACTTTCCCAATATTGAACACTCGTTCTCTACCATTCGAACATATGACCTACTTCGTGCAACATATTCTGATTATTTTAATTCCTGCTAGCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTTAAATACACGAAAGGTGCCTTGGTTATGTCTGAATTCCAATAAACATGATCAGAAATCTGTTATAGAAAGAGTACTTGAATCTAGTTCATCAAATATATCAGGTGGAAAAATCACCTCGTCTTGGTATTGGCCTGATCTATTTCGATATCACACATATCTTGAAGCTGACACCAAAAACAA] [+] EMBL CD097336 [AGTTGTATTAACTATATTACAACAAAAAGAAGGTTCTTTGAATCTACATGTGTCTCTATAACATTTTTATACACTCTGTATTGGTCGTATTTGAGATTTAGTGTTGGGAATCCTCGTTATTCTAATCGACAGACAAAGCTCAGGCAGATACTTCTTGTATTGCACACGTTTGTATTCGGTATTGAAATAGGCTTCAAGCTAGCCACTAGCACGCTTATTTGGATATTAAATCCGTGTCACGTTATAACCATGCTACAGATATTACTTTTGGCTTCATCGTCATCTTGGCTTACAACTTTTATTTTTCGAATCCACTTACATATGATGAATGGTCCTTTGTTAGCGTTAACTTTCCCAATATTGAACACTCGTTCTCTACCATTCGAACATATGACCTACTTCGTGCAACATATTCTGATTATTTTAATTCCTGCTAGCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGA ] [-] EMBL CD111564 [ GTGTT GGAATCCTCGTTATTCTAATCGACAGACAAAGCTCAGGCAGATACTTCTTGTATTGCACACGTTTGTATTCGGTATTGAAATAGGCTTCAAGCTAGCCACTAGCACGCTTATTTGGATATTAAATCCGTGTCACGTTATAACCATGCTACAGATATTACTTTTGGCTTCATCGTCATCCTGGCTTACAACTTTTATTTTTCGAATCCACTGACATATGATGAATGGTCCTTTGTTAGCGTTAACTTTCCCAATATTGAACACTCGTTCTCTACCATTCGAACATATGACCTACTTCGTGCAACATATTCTGATTATTTTAATTCCTGCTAGCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTA ] [-] EMBL CD165164 [ TCTTGTATTGCACACGTTTGTATTCGGTATTGAAATAGGCTTCAAGCTAGCCACTAGCACGCTTATTTGGATATTAAATCCGTGTCACGTTATAACCATGCTACAGATATTACTTTTGGCTTCA ] [-] EMBL CD097366 [ ACTTACATATGATGAATGGTCCTTTGTTAGCGTTAACTTTCCCAATATTGAACACTCGTTCTCTACCATTCGAACATATGACCTACTTCGTGCGACATATTCTGATTATTTTAATTCCTGCTAGCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTTAAATACACGAAAGGTGCCTTGGTTATGTCTGAATTCCAATAAACATGATCAGAAATCTGTTATAGAAAGAGTACTTGAATCTAGTTCATCAAATATATCAGGTGGAAAAATCACCTCG ] [+] EMBL AI975115 [ TTACATATGATGAATGGTCCTTTGTTAGCGTTAACTTTCCCAATATTGAACACTCGTTCTCTACCATTCGAACATATGACCTACTTCGTGCAACATATTCTGATTATTTTAATTCCTGCTAGCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGAT ] [+] EMBL CD121886 [ AATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTTAAATACACGAAAGGTGCCTTGGTTATGTCTGAATTCCAATAAACATGATCAGAAATCTGTTATAGAAAGAGTACTTGAATCTAGTTCATCAAATATATCAGGTGGAAAAATCACCTCGTCTTGGTATTGGCCTGATCTATTTCGATATCACACATATCTTGAAGCTGACACCAAAAACAA] consensusID : consensus_9436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 370 fasta sequence [GGCTTCATCGTCATCTTGGCTTACAACTTTTATTTTTCGAATCCACTTACATATGATGATTGGTCCTTTGTTAGCGTTAACTTTCCCAATATCGAACACTCGTTCTCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTT] [+] EMBL CD191716 [GGCTTCATCGTCATCTTGGCTTACAACTTTTATTTTTCGAATCCACTTACATATGATGATTGGTCCTTTGTTAGCGTTAACTTTCCCAATATCGAACACTCGTTCTCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTT] [+] EMBL CD191843 [GGCTTCATCGTCATCTTGGCTTACAACTTTTATTTTTCGAATCCACTTACATATGATGATTGGTCCTTTGTTAGCGTTAACTTTCCCAATATCGAACACTCGTTCTCTTCTTGAATCAGAGTAGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAATATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTT] consensusID : consensus_9436#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [CAAAATACAAGAAATTGATAATGAACTGAGCTTTTTTTGGCTATTGTATAAACTTCCGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCC] [-] EMBL CD170242 [CAAAATACAAGAAATTGATAATGAACTGAGCTTTTTTTGGCTATTGTATAAACTTCCGTGAATTTTCAGTTGAACCAATTGATGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCTGCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAGCGACCCATTCCCTGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9436#0 AGTTGTATTAACTATATTACAACAAAAAGAAGGTTCTTTGAATCTACATGTGTCTCTATA 60 consensus_9436#1 ------------------------------------------------------------ consensus_9436#2 ------------------------------------------------------------ consensus_9436#0 ACATTTTTATACACTCTGTATTGGTCGTATTTGAGATTTAGTGTTGGGAATCCTCGTTAT 120 consensus_9436#1 ------------------------------------------------------------ consensus_9436#2 ------------------------------------------------------------ consensus_9436#0 TCTAATCGACAGACAAAGCTCAGGCAGATACTTCTTGTATTGCACACGTTTGTATTCGGT 180 consensus_9436#1 ------------------------------------------------------------ consensus_9436#2 ------------------------------------------------------------ consensus_9436#0 ATTGAAATAGGCTTCAAGCTAGCCACTAGCACGCTTATTTGGATATTAAATCCGTGTCAC 240 consensus_9436#1 ------------------------------------------------------------ consensus_9436#2 ------------------------------------------------------------ consensus_9436#0 GTTATAACCATGCTACAGATATTACTTTTGGCTTCATCGTCATCTTGGCTTACAACTTTT 300 consensus_9436#1 -----------------------------GGCTTCATCGTCATCTTGGCTTACAACTTTT 31 consensus_9436#2 ------------------------------------------------------------ consensus_9436#0 ATTTTTCGAATCCACTTACATATGATGAATGGTCCTTTGTTAGCGTTAACTTTCCCAATA 360 consensus_9436#1 ATTTTTCGAATCCACTTACATATGATGATTGGTCCTTTGTTAGCGTTAACTTTCCCAATA 91 consensus_9436#2 ----------------------------------------CAAAATACAAGAAATTGATA 20 * * * *** consensus_9436#0 TTGAACACTCGTTCTCTACCATTCGAACATATGACCTACTTCGTGCAACATATTCTGATT 420 consensus_9436#1 TCGAACACTCGTTCTCT------------------------------------------- 108 consensus_9436#2 ATGAACTGAGCTTTTTTT------------------------------------------ 38 **** ** * * consensus_9436#0 ATTTTAATTCCTGCTAGCTTCTTGAATCAGAGTA-GTGAATTTTCAGTTGAACCAATTGA 479 consensus_9436#1 -------------------TCTTGAATCAGAGTA-GTGAATTTTCAGTTGAACCAATTGA 148 consensus_9436#2 ----------------GGCTATTGTATAAACTTCCGTGAATTTTCAGTTGAACCAATTGA 82 * *** ** * * ************************* consensus_9436#0 TGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCT 539 consensus_9436#1 TGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCT 208 consensus_9436#2 TGATTTTTCGTGGGTGATATTTTCTTTAAGTATACAGGTTCTGTATCATTTCTTAGTCCT 142 ************************************************************ consensus_9436#0 GCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAG 599 consensus_9436#1 GCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAG 268 consensus_9436#2 GCAACCTATTGCTTTGATGACAGGAATAAATCTAAACAATATTCTGTGCCCAGCTATAAG 202 ************************************************************ consensus_9436#0 CGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAAT 659 consensus_9436#1 CGACCCATTCCCTGGCCCAAATTATCGTTTATGGGCAGTCTTTCACCAGTCTGTTATAAT 328 consensus_9436#2 CGACCCATTCCCTGGCC------------------------------------------- 219 ***************** consensus_9436#0 ATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTTAAATACACGAAAGGTGCC 719 consensus_9436#1 ATTAGTTCTGGGAAAGATTTTTACTTTGTTTTTGCTTCGGTT------------------ 370 consensus_9436#2 ------------------------------------------------------------ consensus_9436#0 TTGGTTATGTCTGAATTCCAATAAACATGATCAGAAATCTGTTATAGAAAGAGTACTTGA 779 consensus_9436#1 ------------------------------------------------------------ consensus_9436#2 ------------------------------------------------------------ consensus_9436#0 ATCTAGTTCATCAAATATATCAGGTGGAAAAATCACCTCGTCTTGGTATTGGCCTGATCT 839 consensus_9436#1 ------------------------------------------------------------ consensus_9436#2 ------------------------------------------------------------ consensus_9436#0 ATTTCGATATCACACATATCTTGAAGCTGACACCAAAAACAA 881 consensus_9436#1 ------------------------------------------ consensus_9436#2 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||