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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 577 fasta sequence
[ATACGTGAACCTATTAATTGGGATGAAGTGAGCAAAATAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAAATAAGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATCACACAATACTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTGATTATTCAACTGTGAAGGACTGTTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCTAAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACATTAAGGCTTTGGATCAATTAATTTCTAAGAAATACGATATTTTGTGGAGATGGAATAAAGCATTATTTAACTACGAATTTGCTTCGAGAAATATCAAGAGCACAGTATATTTCTTACAAAAGATGTATAACTTGGGATAGAATGCTGTTTGGAAATATTTATCACGAATATTAATCAACCTAGTTTAGTTGTATTTGTTCGAGGATGATT]
[+] EMBL CD155987 [ATACGTGAACCTATTAATTGGGATGAAGTGAGCAAAATAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAAATAAGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATCACACAATACTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTGATTATTCAACTGTGAAGGACTGTTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCTAAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACGTTAAGGCTTTGGATCAATTAATTTCTAAGAAAT ]
[+] EMBL CD119876 [ AGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAAATAAGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATCACACAATACTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTGATTATTCAACTGTGAAGGACTGGTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCTAAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACATTAAGGCTTTGGATCAATTAATTTCTAAGAAAT ]
[+] EMBL CD147068 [ ATCACACAATACTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTGATTATTCAACTGTGAAGGACTGTTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCTAAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACATTAAGGCTTTGGATCAATTAATTTCTAAGAAATACGATATTTTGTGGAGATGGAATAAAGCATTATTTAACTACGAATTTGCTTCGAGAAATATCAAGAGCACAGTATATTTCTTACAAAAG ]
[+] EMBL CD110853 [ ACAACAAGAAGAAACCTTCAATTTATTTATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTGATTATTCAACTGTGAAGGACTGTTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCTAAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACATTAAGGCTTTGGATCAATTAATTTCTAAGAAATACGATATTTTGTGGAGATGGAATAAAGCATTATTTAACTACGAATTTGCTTCGAGAAATATCAAGAGCACAGTATATTTCTTACAAAAGATGTATAACTTGGGATAGAATGCTGTTTGGAAATATTTATCACGAA ]
[-] EMBL CD111499 [ CAACAAGAAGAAACCTTCAATTTATTTATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTAATTATTCAACTGTGAAGGACTGTTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCTAAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACATTAAGGCTTTGGATCAATTAATTTCTAAGAAATACGATATTTTGTGGAGATGGAATAAAGCATTATTTAACTACGAATTTGCTTCGAGAAATATCAAGAGCACAGTATATTTCTTACAAAAGATGTATAACTTGGGATAGAATGCTGTTTGGAAATATTTATCACGAAT ]
[+] EMBL AI478026 [ CTACGAATTTGCTTCGAGAAATATCAAGAGCACAGTATATTTCTTACAAAAGATGTATAACTTGGGATAGAATGCTGTTTGGAAATATTTATCACGAATATTAATCAACCTAGTTTAGTTGTATTTGTTCGAGGATGATT]
consensusID : consensus_9437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence
[CGTGAACCTATTAATTGGGATGAAGTGAACAAAATAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAGATAAGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATCACACAATGTATGTTTAAAATAAAGATAATTGTTTGCACTAAACTCATGGTTGATTTTAGACTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAGGTATAATCAGATAATACAAATAAATGCAAATCTTATCGTCTCATCATTCACACTCATGAATCATTACACTGATTTGTTTCAGCTATTTCGATTTTTCACAAATCAATTGGGATCATAAGTCATTCTACTTCTTTATTGTACTTACTTTCTAAAAGTTACACAAAACAATCAAATGAGAGTTACAGTGATAACATTCCTAATCTGTATCAAAAAACCACGAACATTTCAGATCAT]
[+] EMBL CD154171 [CGTGAACCTATTAATTGGGATGAAGTGAACAAAATAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAGATAAGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATCACACAATGTATGTTTAAAATAAAGATAATTGTTTGCACTAAACTCATGGTTGATTTTAGACTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAGGTATAATCAGATAATACAAATAAATGCAAATCTTATCGTCTCATCATTCACACTCATGAATCATTACACTGATTTGTTTCAGCTATTTCGATTTTTCACAAATCAATTGGGATCATAAGTCATTCTACTTCTTTATTGTACTTACTTTCTAAAAGTTACACAAAACAATCAAATGAGAGTTACAGTGATAACATTCCTAATCTGTATCAAAAAACCACGAACATTTCAGATCAT]
consensusID : consensus_9437#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[TATTTCATCTTTATTGTTAGTACATTACCAAGCTGAGATGCCAAAATACTCTGCTATAAATGCGCTATTCGATAAGGCATTGGGAGATGAACCTATACGTGAACCTATTAATTGGGATGAAGTGAGCAAAAGTAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAAATAAGTAACATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATACACAATACTTGAAATGTAAAGTTAACACAACAGGAGAATCCTTCAATTTATTTATCAAGAAATGAATAACGTTTAAAGTACATCTACACATTTACGGATATCACTGTGAAGACTGTTCATAAAGAAGAAAGTTTTGAAGAAGAGTCTCTAAATATGAGTTGCCCTATCGAACTCCTGAGAGACTTAGGCTGGATCATTATTGCAAGAATCGATTTTGTGAGTG]
[+] EMBL AW497760 [TATTTCATCTTTATTGTTAGTACATTACCAAGCTGAGATGCCAAAATACTCTGCTATAAATGCGCTATTCGATAAGGCATTGGGAGATGAACCTATACGTGAACCTATTAATTGGGATGAAGTGAGCAAAAGTAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGTTATTAAAGAGTCAAATAAGTAACATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATACACAATACTTGAAATGTAAAGTTAACACAACAGGAGAATCCTTCAATTTATTTATCAAGAAATGAATAACGTTTAAAGTACATCTACACATTTACGGATATCACTGTGAAGACTGTTCATAAAGAAGAAAGTTTTGAAGAAGAGTCTCTAAATATGAGTTGCCCTATCGAACTCCTGAGAGACTTAGGCTGGATCATTATTGCAAGAATCGATTTTGTGAGTG]
consensusID : consensus_9437#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence
[TTGTTCACTTCATCCCAATTAACTAAGTTTATAGGTTCACGTATAGGTTCATCTCCCAATGTTATTTGACTCTTTAATAACATTTCATTTTCTCTGAACATAGTTATTCCTCTCTCTACATCATTTATTTTGTTCACTTCATCCCAATTAACTAAGTTTATAGGTTCACGTATAGGTTCATCTCCCAATGTTATTTGACTCTTTAATAACATTTCATTTTCTCTGAACATAGTTATTCCTCTCTCTACATCATTTATTTTGTTCACTTCATCCCAATTAACTAAGTTT]
[+] EMBL CD119884 [TTGTTCACTTCATCCCAATTAACTAAGTTTATAGGTTCACGTATAGGTTCATCTCCCAATGTTATTTGACTCTTTAATAACATTTCATTTTCTCTGAACATAGTTATTCCTCTCTCTACATCATTTATTTTGTTCACTTCATCCCAATTAACTAAGTTTATAGGTTCACGTATAGGTTCATCTCCCAATGTTATTTGACTCTTTAATAACATTTCATTTTCTCTGAACATAGTTATTCCTCTCTCTACATCATTTATTTTGTTCACTTCATCCCAATTAACTAAGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9437#0 ------------------------------------------------------------
consensus_9437#2 TATTTCATCTTTATTGTTAGTACATTACCAAGCTGAGATGCCAAAATACTCTGCTATAAA 60
consensus_9437#1 ------------------------------------------------------------
consensus_9437#3 ------------------------------------------------------------
consensus_9437#0 ----------------------------------ATACGTGAACCTATTAATTGGGATGA 26
consensus_9437#2 TGCGCTATTCGATAAGGCATTGGGAGATGAACCTATACGTGAACCTATTAATTGGGATGA 120
consensus_9437#1 -------------------------------------CGTGAACCTATTAATTGGGATGA 23
consensus_9437#3 ------------------------------------------------------------
consensus_9437#0 AGTGAGCAAAA-TAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGT 85
consensus_9437#2 AGTGAGCAAAAGTAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGT 180
consensus_9437#1 AGTGAACAAAA-TAAATGATGTAGAGAGAGGAATAACTATGTTCAGAGAAAATGAAATGT 82
consensus_9437#3 ---------------------------------TTGTTCACTTCATCCCAA-TTAACTAA 26
* * **** ** * ** *
consensus_9437#0 TATTAAAGAGTCAAATA-AGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATC 144
consensus_9437#2 TATTAAAGAGTCAAATA-AGTAACATGGGTCAAAATCTGGTTAAAAAACATAGAGCGAT- 238
consensus_9437#1 TATTAAAGAGTCAGATA-AGTACCATGGGTCAAAATCTGGTTAAAAAACATAGAGCGATC 141
consensus_9437#3 GTTTATAGGTTCACGTATAGGTTCATC--TCCCAATGTTATTTGACTCTTTAATAACATT 84
*** ** *** ** ** *** ** *** * ** * ** **
consensus_9437#0 ACACAATACTTGA--AATGTAAAAGTAAACAACAACAAGAAGA--AACCTTCAATTTATT 200
consensus_9437#2 ACACAATACTTGA--AATGTAAAGTTAAC--ACAACA-GGAGA--ATCCTTCAATTTATT 291
consensus_9437#1 ACACAATGTATGTTTAAAATAAAGATAATTGTTTGCACTAAACTCATGGTTGATTTTAGA 201
consensus_9437#3 TCATTTTCTCTGAACATAGTTATTCCTCTC-TCTACATCATTTATTTTGTTCACTTCATC 143
** * ** * * * ** ** * ** *
consensus_9437#0 TATCAAAGAAATGAATAAACAGTTTAAAAATAACAATCTAACATCATTTACTGATT--AT 258
consensus_9437#2 TATCAA-GAAATGAATAA--CGTTTAAAG--TACA-TCTA-CA-CATTTACGGAT---AT 340
consensus_9437#1 CTTGAAATGTAAAAGTAAACAACAACAAGAAGAAACCTTCAATTTATTTATCAAAG--GT 259
consensus_9437#3 C--CAATTAACTAAGTTTATAGGTTCACG-------TATAGGTTCATCTCCCAATGTTAT 194
** * * * * ** * * *
consensus_9437#0 TCAACTGTGAAGGACTGTTTCATAAAAGAAGAAAAGATTTTTGAAAGAAAGAAGTCTTCT 318
consensus_9437#2 C--ACTGTGAAG-ACTGTT-CATAAA----GAAGAAAGTTTTGAAGAAGAG----TCTCT 388
consensus_9437#1 ATAATCAGATAATACAAATAAATGCAAATCTTATCGTCTCATCATTCACAC----TCATG 315
consensus_9437#3 TTGACTCTTTAATAACATTTCATTTTCTCTGAACATAGTTATTCCTCTCTC---TACATC 251
* * * * ** * * *
consensus_9437#0 AAAAATAATGAAGATTGCACACTATCTGAGACATTCCCTGAAGAAGACATTAAGGCTTTG 378
consensus_9437#2 AAATATGA-----GTTGCCC--TATCGAA-----CTCCTGA----GAGACTTAGGCT--G 430
consensus_9437#1 AATCATTACACTGATTTGTT-TCAGCTATTTCGATTTTTCACAAATCAATTGGGATCATA 374
consensus_9437#3 ATTTATTTTGTTCACTTCATCCCAATTAACTAAGTTT----------------------- 288
* ** * *
consensus_9437#0 GATCAATTAATTTCTAAGAAATACGATATTTTGTGGAGATGGAATAAAGCATTATTTAAC 438
consensus_9437#2 GATCA-TTA--TTGCAAGAATCG----ATTTTGTGAGTG--------------------- 462
consensus_9437#1 AGTCATTCTACTTCTTTATTGTACT-TACTTTCTAAAAGTTACACAAAACAAT---CAAA 430
consensus_9437#3 ------------------------------------------------------------
consensus_9437#0 TACGAATTTGCTTCGAGAAATATCAAGAGCACAGTATATTTCTTACAAAAGATGTATAAC 498
consensus_9437#2 ------------------------------------------------------------
consensus_9437#1 TGAGAGTTACAGTGATAACATTCCTAATCTGTATCAAAAAACC-ACGAACATTTCAGATC 489
consensus_9437#3 ------------------------------------------------------------
consensus_9437#0 TTGGGATAGAATGCTGTTTGGAAATATTTATCACGAATATTAATCAACCTAGTTTAGTTG 558
consensus_9437#2 ------------------------------------------------------------
consensus_9437#1 AT---------------------------------------------------------- 491
consensus_9437#3 ------------------------------------------------------------
consensus_9437#0 TATTTGTTCGAGGATGATT 577
consensus_9437#2 -------------------
consensus_9437#1 -------------------
consensus_9437#3 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||