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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1073 fasta sequence
[GGGGTGTCGCCATATTCTTTCCGTTTCAGAAAGTAATCAGAAAAAAAATGCCGACAAAGGAATGTAAATAAGAAAACAAACTAAACGAATGTTGGTAGCTACGCTGGAGTCGCTTAAGTAACAGTTAACAAAGTGCACATGATCTTTTAGAAAAGATTCACAAAGCAAGCTATAGATTAAATTAAAACAATGAGTCATAAGGAGACGAAAGAACCAGGTAAATAAACAAGATTAAGGGATTTCAAATATTAAGCTGGAGTGAATGAATGGGCAATATTTGTTTCTGCAGAAGGTACGGGAGTGTCGTCTTCGAGAACTTCATCTACACTTTCTCCTCCATCACTTCTAGCACCAATGCTTGTACAGGCACTTGCACTACTGCTTTCTGTACATGGTACTTCAGCTAGAATTTCGTCTTTGTTTGATGACGCGAAGCCTGAATGTCCGGAATCTGATGATCTTGGGGTGGGGGATAGTGTCATACGTGATTCTCTCCTAGAAGACTCGGAATCCACATTCATACCATGTGAATGCCCAGTAGAGGGATAAGTAGCAGAGTTTGCATATTTTTGTGTCCACAGTCGTGCAATGCGATCATGTTCTGATCTGTTATGCATGTATTGGCTAGCAATAGATCCAAACAGCGGGTCGGCAGGATTGCAATCAGTAAGTAACGAGCAAATGGACAGTAAAACTTTACTAATAGTAAGAGCAGGAGACCAATTATTCTTGAGTATATCTAGGCAAATCACACCTTGACTGTTAATATTGCAGTGATAGATACGAGTTTTAAAAATTACTTTTGGGGGCTTAAACGGATACTCCATAGAAAAGTGAATGTCCAGGAAGAATATTCCACCTTCATAAACAGATCCTTGAGGACCTAATAAAGTTGATACCCATTCATAGAGATTATCTCCTCGCGGAAATGCACTGCAATTGGGCGGAGGATCTGACATGATATCCGTTAATTCCTTTTGTATTCTTTTCAAACTTGTAGACATGGACTTAGACTTGAAATGTACACTCGAAGGAGGTTTTTGACCATTACAGCCTCGTGCCGAATTCTGGCC]
[+] EMBL CD074086 [GGGGTGTCGCCATATTCTTTCCGTTTCAGAAAGTAATCAGAAAAAAAATGCCGACAAAGGAATGTAAATAAGAAAACAAACTAAACGAATGTTGGTAGCTACGCTGGAGTCGCTTAAGTAACAGTTAACAAAGTGCACATGATCTTTTAGAAAAGATTCACAAAGCAAGCTATAGATTAAATTAAAACAATGAGTCATAAGGAGACGAAAGAACCAGGTAAATAAACAAGATTAAGGGATTTCAAATATTAAGCTGGAGTGAATGAATGGGCAATATTTGTTTCTGCAGAAGGTACGGGAGTGTCGTCTTCGAGAACTTCATCTACACTTTCTCCTCCATCACTTCTAGCACCAATGCTTGTACAGGCACTTGCACTACTGCTTTCTGTACATGGTACTTCAGCTAGAATTTCGTCTTTGTTTGATGACGCGAAGCCTGAATGTCCGGAATCTGATGATCTTGGGGTGGGGGATAGTGTCATACGTGATTCTCTCCTAGAAGACTCGGAATCCACATTCATACCATGTGAATGCCCAGTAGAGGGATAAGTAGCAGAGTTTGCATATTTTTGTGTCCACAGTCGTGCAATGCGATCATGTTCTGATCTGTTATGCATGTATTGGCTAGCAATAGATCCAAACAGCGGGTCGGCAGG ]
[-] EMBL CD155740 [ CAGGTAAATAAACAAGATTAAGGGATTTCAAATATTAAGCTGGAGTGAATGAATGGGCAATATTTGTTTCTGCAGAAGGTACGGGAGTGTCGTCTTCGAGAACTTCATCTACACTTTCTCCTCCATCACTTCTAGCACCAATGCTTGTACAGGCACTTGCACTACTGCTTTCTGTACATGGTACTTCAGCTAGAATTTCGTCTTTGTTTGATGACGCGAAGCCTGAATGTCCGGAATCTGATGATCTTGAGGTGGGGGATAGTGTCATA ]
[+] EMBL CD092867 [ CAAGATTAAGGGATTTCAAATATTAAGCTGGAGTGAATGAATGGGCAATATTTGCTTCTGCAGAAGGTACGGGAGTGTCGCCTTCGAGAACTTCATCTACACTTTCTCCTCCATCACTTCTAGCACCAATGCTTGTACAGGCACTTGCACTACTGCTTTCTGTACATGGTACTTCAGCTAGAATTTCGTCTTTGTTTGATGACGCGAAGCCTGAATGTCCGGAATCTGATGATCTTGGGGTGGGGGATAGTGTCATACGTGATTCTCTCCTAGAAGACTCGGAATCCACATTCATACCATGTGAATGCCCAGTAGAGGGATAAGTAGCAGAGTTTGCATATTTTTGTGTCCACAGTCGTGCAATGCGATCATG ]
[-] EMBL CD079888 [ TCCATCACTTCTAGCACCAATGCTTGTACAGGCACTTGCACTACTGCTTTCTGTACATGGTACTTCAGCTAGAATTTCGTCTTTGTTTGATGACGCGAAGCCTGAATGTCCGGAATCTGATGATCTTGGGGTGGGGGATAGTGTCATACGTGATTCTCTCCTAGAAGACTCGGAATCCACATTCATACCATGTGAATGCCCAGTAGAGGGATAAGTAGCAGAGTTTGCATATTTTTGTGTCCACAGTCGTGCAATGCGATCATGTTCTGATCTGTTATGCATGTATTGGCTAGCAATAGATCCAACAAGCGGGTCGGCAGGATTGCAATCAGTAAGTAACGAGCAAATGGACAGTAAAACTTTACTAATAGTAAGAGCAGGAGACCAATTATTCTTGAGTATATCTAGGCAAATCACACCTTGACTGTTAATATTGCAGTGATAGATACGAGTTTTAAAAATTACTTTTGGGGGCTTAAACGGATACTCCATAGAAAAGTGAATGTCCAGGAAGAATATTCCACCTTCATAAACAGATCCTTGAGGACCTAATAAAGTTGATACCCATTCATAGAGATTATCTCCTCGCGGAAATGCACTGCAATTGGGCGGAGGATCTGACATGATATCCGTTAATTCCTTTTGTATTCTTTTCAAACTTGTAGACATGGACTTAGACTTGAAATGTACACTCGAAGGAGGTTTTTGACCATTACAGCCTCGTGCCGAATTCTGGCC]
consensusID : consensus_9442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 796 fasta sequence
[NAATGTACTTTATTTAATGAACATCA-AGAACCTAATAAACAATAATGGACTGAGAAATGCTGATATGTTCACATGCACAAAGATTAAGAAACATAAGCATATAATACATGTTAGCATACGATTATTAATCAGCTTGAACAGTGCTAACTTTGTACAGCCGTTATATCATAGAATAATTATGAAAACGATCAGCGATGGTTGCAGTTTCACTTTGAAACAATTAGAAATAAAATATGCGTAAACTGATCCGCAACTTTAGTTAGACCTAAAGTAAACACCTGAGATTTTGAAAAAGTCGGAGATACTTTTAGTGGGGTGTCGCCATATTCTTTCCGTTTCAGAAAGTAATCAGAAAAAAAATGCCGACAAAGGAATGTAAATAAGAAAACAAACTAAACGAATGTTGGTAGCTACGCTGGAGTCGCTTAAGTAACAGTTAACAAAGTGCACATGATCTTTTAGAAAAGATTCACAAAGCAAGCTATAGATTAAATTAAAACAATGAGTCATAAGGAGACGAAAGAACCAGGTAAATAAACAAGATTAAGGGATTTCAAATATTAAGCTGGAGTGAATGAATGGGCAATATTTGTTTCTGCAGAAGGTAC-GGGAGTGTCGTCTTCGAGAACTTCATCTACACTTTCTCCTCCATCACTTCTAGCACCAATGCTTGTACAGGCACTTGCACTACTGCTTTCTGTACATGGTACTTCAGCTAGAATTTCGTCTTTGTTTGATGACGCGAAGCCTGAATGTCCGGAATCTGATGATCTTGGGGTGGGGCCCTCGTGCCGAA]
[-] EMBL CD080413 [NAATGTAC TTATTAAATG ACATCAGNNNACNTAATANNCAATAATGGACTGAGAAATGCTGATATGTTCACATGCCCAAAGATTAAGAAACATAAGCATATAATACATGTTAGCATACGATTATTAATCAGCTTGAACAGTGCTAACTTTGTACAGCCGTTATATCATAGAATAATTATGANAACGATCAGCGATGGTTGCAGTTTCACTTTGAAACAATTAGAAATAAAATATGCGTAAACTGATCCGCAACTTTAGTTAGACCTAAAGTAAACACCTGAGATTTTGAAAAAGTCGGAGATACTTTTAGTGGGGTGTCGCCATATTCTTTCCGTTTCAGAAAGTAATCAGAAAAAAAATGCCGACAAAGGAATGTAAATAAGAAAACAAACTAAACGAATGTTGGTAGCTACGCTGGAGTCGCTTAAGTAACAGTTAACAAAGTGCACATGATCTTTTAGAAAAGATTCACAAAGCAAGCTATAGATTAAATTAAAACAATGAGTCATAAGGAGACGAAAGAACCAGGTAAATAAACAAGATTAAGGGATTTCAAATATTAAGCTGGAGTGAATGAATGGGCAATATTTGTTTCTGCAGAAGGTAC GGGAGTGTCGTCTTCGAGAACTTCATCTACACTTTCTCCTCCATCACTTCTAGCACCAATGCTTGTACAGGCACTTGCACTACTGCTTTCTGTACATGGTACTTCAGCTAGAATTTCGTCTTTGTTTGATGACGCGAAGCCTGAATGTCCGGAATCTGATGATCTTGGGGTGGGGCCCTCGTGCCGAA]
[+] EMBL CD074504 [ TGTACTTTATTTAATGAACATCA AGAACCTAATAAACAATAATGGACTGAGAAATGCTGATATGTTCACATGCACAAAGATTAAGAAACATAAGCATATAATACATGTTAGCATACGATTATTAATCAGCTTGAACAGTGCTAACTTTGTACAGCCGTTATATCATAGAATAATTATGAAAACGATCAGCGATGGTTGCAGTTTCACTTTGAAACAATTAGAAATAAAATATGCGTAAACTGATCCGCAACTTTAGTTAGACCTAAAGTAAACACCTGAGATTTTGAAAAAGTCGGAGATACTTTTAGTGGGGTGTCGCCATATTCTTTCCGTTTCAGAAAGTAATCAGAAAAAAAATGCCGACAAAGGAATGTAAATAAGAAAACAAACTAAACGAATGTTGGTAGCTACGCTGGAGTCGCTTAAGTAACAGTTAACAAAGTGCACATGATCTTTTAGAAAAGATTCACAAAGCAAGCTATAGATTAAATTAAAACAATGAGTCATAAGGAGACGAAAGAACCAGGTAAATAAACAAGATTAAGGGATTTCAAATATTAAGCTGGAGTGAATGAATGGGCAATATTTGTTTCTGCAGAAGGTACGGGGAGTGTCGTCTTCGAGAACTTCATC ]
[+] EMBL AA999458 [ TGTACTTTATTTAATGAACATCA AGAACCTAATAAACAATAATGGACTGAGAAATGCTGATATGTTCACATGCACAAAGATTAAGAAACATAAGCATATAATACATGTTAGCATACGATTATTAATCAGCTTGAACAGTGCTAACTTTGTACAGCCGTTATATCATAGAATAATTATGAAAACGATCAGCGATGGTTGCAGTTTCACTTTGAAACAATTAGAAATAAAATATGCGTAAACTGATCCGCAACTTTAGTTAGACCTAAAGTAAACACCTGAGt ]
[+] EMBL AA999536 [ TGTACTTTATTTAATGAACATCA AGAACCTAATAAACAATAATGGACTGAGAAATGCTGATATGTTCACATGCACAAAGATTAAGAAACATAAGCATATAATACATGTTAGCATACGATTATTAATCAGCTTGAACAGTGCTAACTTTGTACAGCCGTTATATCATAGAATAATTATGAAAACGATCAGCGATGGTTGCAGTTTCACTTTGAAACAATTAGAAATAAAATATGCGTAAACTGATCCGCAACTTTAGTTAGACCTAAAGTAA ]
consensusID : consensus_9442#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[CGAGCAAATGGACAGTAAAACTTTACTAATAGTAAGAGCAGGAGACCAATTATTCTTGAGTATATCTAGGCAAATCACACCTTGACTGTTAATATTGCAGTGATAGATACGAGTTTTAAAAATTACTTTTGGGGGCTTAAACGGATACTCCATAGAAAAGTGAATGTCCAGGAAGAATATTCCACCTTCATAAACAGATCCTTGAGGACCTAATAAAGTTGATACCCATTCATAGAGATTATCTCCTCGCGGAAATGCACTGCAATTGGGCGGAGGATCTGACATGATATCCGTTAATTCCTTTTGTATTCTTTTCAAACTTGTAGACATGGACTTAGACTTGAAATGTACACTCGAAGGAGGTTTTTGACCATTACAGGATGAAGGCAACGAGTCTACAGTAGTTGAACGACTACAAAGGCTCTGTCATGTGTACGTTTACGCACTCCACGTCTTGAATCAGAGGAAGACATAGGACTATGTTACAACGACGAAATCGTTGAAATGGCGGGTAACCCTCGT]
[-] EMBL CD083553 [CGAGCAAATGGACAGTAAAACTTTACTAATAGTAAGAGCAGGAGACCAATTATTCTTGAGTATATCTAGGCAAATCACACCTTGACTGTTAATATTGCAGTGATAGATACGAGTTTTAAAAATTACTTTTGGGGGCTTAAACGGATACTCCATAGAAAAGTGAATGTCCAGGAAGAATATTCCACCTTCATAAACAGATCCTTGAGGACCTAATAAAGTTGATACCCATTCATAGAGATTATCTCCTCGCGGAAATGCACTGCAATTGGGCGGAGGATCTGACATGATATCCGTTAATTCCTTTTGTATTCTTTTCAAACTTGTAGACATGGACTTAGACTTGAAATGTACACTCGAAGGAGGTTTTTGACCATTACAGGATGAAGGCAACGAGTCTACAGTAGTTGAACGACTACAAAGGCTCTGTCATGTGTACGTTTACGCACTCCACGTCTTGAATCAGAGGAAGACATAGGACTATGTTACAACGACGAAATCGTTGAAATGGCGGGTAACCCTCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9442#0 GGGGTGTCGCCATATTCTTTCCGTTTCAGAAAGTAATCAGAAAAAAAATGCCGACAAAGG 60
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 ------------------------------------------------------------
consensus_9442#0 AATGTAAATAAGAAAACAAACTAAACGAATGTTGGTAGCTACGCTGGAGTCGCTTAAGTA 120
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 ------------------------------------------------------------
consensus_9442#0 ACAGTTAACAAAGTGCACATGATCTTTTAGAAAAGATTCACAAAGCAAGCTATAGATTAA 180
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 ------------------------------------------------------------
consensus_9442#0 ATTAAAACAATGAGTCATAAGGAGACGAAAGAACCAGGTAAATAAACAAGATTAAGGGAT 240
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 ------------------------------------------------------------
consensus_9442#0 TTCAAATATTAAGCTGGAGTGAATGAATGGGCAATATTTGTTTCTGCAGAAGGTACGGGA 300
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 ------------------------------------------------------------
consensus_9442#0 GTGTCGTCTTCGAGAACTTCATCTACACTTTCTCCTCCATCACTTCTAGCACCAATGCTT 360
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 ------------------------------------------------------------
consensus_9442#0 GTACAGGCACTTGCACTACTGCTTTCTGTACATGGTACTTCAGCTAGAATTTCGTCTTTG 420
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 ------------------------------------------------------------
consensus_9442#0 TTTGATGACGCGAAGCCTGAATGTCCGGAATCTGATGATCTTGGGGTGGGGGATAGTGTC 480
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 ------------------------------------------------------------
consensus_9442#0 ATACGTGATTCTCTCCTAGAAGACTCGGAATCCACATTCATACCATGTGAATGCCCAGTA 540
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 ------------------------------------------------------------
consensus_9442#0 GAGGGATAAGTAGCAGAGTTTGCATATTTTTGTGTCCACAGTCGTGCAATGCGATCATGT 600
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 ------------------------------------------------------------
consensus_9442#0 TCTGATCTGTTATGCATGTATTGGCTAGCAATAGATCCAAACAGCGGGTCGGCAGGATTG 660
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 ------------------------------------------------------------
consensus_9442#0 CAATCAGTAAGTAACGAGCAAATGGACAGTAA-AACTTTACTAATAGTAAGAGCAGGAGA 719
consensus_9442#2 --------------CGAGCAAATGGACAGTAA-AACTTTACTAATAGTAAGAGCAGGAGA 45
consensus_9442#1 -----NAATGTACTTTATTTAATGAACATCAAGAACCTAATAAACAATAATGGACTGAGA 55
* **** *** ** *** * * ** * *** * ****
consensus_9442#0 CCAATTATTCTTGAGTATATCTAGGCAAATCACACCTTGACTGTTAATATTGCAGTGATA 779
consensus_9442#2 CCAATTATTCTTGAGTATATCTAGGCAAATCACACCTTGACTGTTAATATTGCAGTGATA 105
consensus_9442#1 AATGCTGATAT-GTTCACATGCACAAAGATTAAGAAACATAAGCATATAATACA-TGTTA 113
* * * * * ** * * ** * * *** * ** ** **
consensus_9442#0 G-ATACGAGTTTTAAAAA---TTACTTTTGGGGGCTTA----AACGGATACTCCATAGAA 831
consensus_9442#2 G-ATACGAGTTTTAAAAA---TTACTTTTGGGGGCTTA----AACGGATACTCCATAGAA 157
consensus_9442#1 GCATACGATTATTAATCAGCTTGAACAGTGCTAACTTTGTACAGCCGTTATATCATAGAA 173
* ****** * **** * * * ** *** * * * ** *******
consensus_9442#0 AAGT---GAATGTCCAGGAAGAATATTCCACCTTCATAAACAGATCCTTGAGGACCTAAT 888
consensus_9442#2 AAGT---GAATGTCCAGGAAGAATATTCCACCTTCATAAACAGATCCTTGAGGACCTAAT 214
consensus_9442#1 TAATTATGAAAACGATCAGCGATGGTTGCAGTTTCACTTTGAAACAATTAGAAATAAAAT 233
* * *** ** ** ** **** * * ** * ***
consensus_9442#0 A-----AAGTTGATACCCA--TTCA--TAGAGATTATCTCCTCGCG-GAAATGCACTGCA 938
consensus_9442#2 A-----AAGTTGATACCCA--TTCA--TAGAGATTATCTCCTCGCG-GAAATGCACTGCA 264
consensus_9442#1 ATGCGTAAACTGATCCGCAACTTTAGTTAGACCTAAAGTAAACACCTGAGATTTTGAAAA 293
* ** **** * ** ** * **** * * * * * ** ** *
consensus_9442#0 ATTGGGCGGAGGATCTGACATGATATC----CGTTAATTCCTTTT------GTATTCTTT 988
consensus_9442#2 ATTGGGCGGAGGATCTGACATGATATC----CGTTAATTCCTTTT------GTATTCTTT 314
consensus_9442#1 AGTCGGAGATACTTTTAGTGGGGTGTCGCCATATTCTTTCCGTTTCAGAAAGTAATCAGA 353
* * ** * * * * * ** ** **** *** *** **
consensus_9442#0 TCAAACTTGTAGACAT-GGACTTAGACTTGAAATGTACACTCGAAGGAGGTTTTTGACCA 1047
consensus_9442#2 TCAAACTTGTAGACAT-GGACTTAGACTTGAAATGTACACTCGAAGGAGGTTTTTGACCA 373
consensus_9442#1 AAAAAAATGCCGACAAAGGAATGTAAATAAGAAAACAAACTAAACGAATGTTGGTAGCTA 413
*** ** **** *** * * * ** * *** * * * *** * * *
consensus_9442#0 TTACAGCCTCG---TGCCGA--ATTCTGGC----C------------------------- 1073
consensus_9442#2 TTACAGGATGA---AGGCAACGAGTCTACA----GTAGTTGAACGACTACAAAGGCTCTG 426
consensus_9442#1 CGCTGGAGTCGCTTAAGTAAC-AGTTAACAAAGTGCACATGATCTTTTAGAAAAGATTCA 472
* * * * *
consensus_9442#0 ------------------------------------------------------------
consensus_9442#2 TCATGTGTAC-GTTTACGCACTCCACGTCTTGAATCAGAGGAAGACATAGGACTATGTTA 485
consensus_9442#1 CAAAGCAAGCTATAGATTAAATTAAAACAATGAGTCATAAGGAGACGAAAGAACCAGGTA 532
consensus_9442#0 ------------------------------------------------------------
consensus_9442#2 CAACGACGAAATCGTTGAAATGGCGGGTA--ACCCTCGT--------------------- 522
consensus_9442#1 AATAAACAAGATTAA-GGGATTTCAAATATTAAGCTGGAGTGAATGAATGGGCAATATTT 591
consensus_9442#0 ------------------------------------------------------------
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 GTTTCTGCAGAAGGTACGGGAGTGTCGTCTTCGAGAACTTCATCTACACTTTCTCCTCCA 651
consensus_9442#0 ------------------------------------------------------------
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 TCACTTCTAGCACCAATGCTTGTACAGGCACTTGCACTACTGCTTTCTGTACATGGTACT 711
consensus_9442#0 ------------------------------------------------------------
consensus_9442#2 ------------------------------------------------------------
consensus_9442#1 TCAGCTAGAATTTCGTCTTTGTTTGATGACGCGAAGCCTGAATGTCCGGAATCTGATGAT 771
consensus_9442#0 -------------------------
consensus_9442#2 -------------------------
consensus_9442#1 CTTGGGGTGGGGCCCTCGTGCCGAA 796
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||