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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[TGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATTTCAGATGTGACTGTGGCAACTCAAAATTTGCTGGTGTTTGTAATTGCCTATTGTGGGAGGAGAAGGACGATGAAAATGATTTAAACCAGTACAATGACAATTTTTCTAACCAATACTGCACGTGCCAACGTCCGTATCCAGACCCCGACTATGACGGTGTTGAAGAGATGATTCAATGTGGCATATGTGAAAACTGGTTTCATTTGGAGCATCTCAACATGGATAAAGGATTTCAGCCACCCGAGGATTATAACGAAATGACCTGTTTTATGTGCATTAAAAAGTACGCGTTTCTATTTATGCATGCATATGACACTGAGGAGACGTTTCGGCAATCTTGTCATTCAGCTACTTGTACAAAGAATAACAGCTTGGCTGAGGTTATAT]
[+] EMBL CD201306 [TGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATTTCAGATGTGACTGTGGCAACTCAAAATTTGCTGGTGTTTGTAATTGCCTATTGTGGGAGGAGAAGGACGATGAAAATGATTTAAACCAGTACAATGACAATTTTTCTAACCAATACTGCACGTGCCAACGTCCGTATCCAGACCCCGACTATGACGGTGTTGAAGAGATGATTCAATGTGGCATATGTGAAAACTGGTTTCATTTGGAGCATCTCAACATGGATAAAGGATTTCAGCCACCCGAGGATTATAACGAAATGACCTGTTTTATGTGCATTAAAAAGTACGCGTTTCTATTTATGCATGCATATGACACTGAGGAGACGTTTCGGCAATCTTGTCATTCAGCTACTTGTACAAAGAATAACAGCTTGGCTGAGGTTATAT]
consensusID : consensus_9446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence
[TACTACAGGAAATTGATGAGGAGGACTGGATTACCATGGGTGGGATCGATGATAGATCTACCTGTACATTTACAAGGGTAACAAACAACTCATTCATTACGTAATGAATATACCGTACGGTATATAGGGATATGTAAAACGACAGGCGCTTTACACTTGTCATACATGCCTCAACATTGACCAGATAAAAGCTGCAATTTGCTTTCCTTGTGCAATTGTGTGTCATTCTGACCATGACATAGTTGAATTGTACACCAAACGCTATTTCAGATGTGACTGTGGCAACTCAAAATTTGCTGGTGTTTGTAATTGCCTATTGTGGGAGGAGAAGGACGATGAAAATGATTTAAACCAGTACAATGACAATTTTTCTAACCAATACTGCACGTGCCAACGTCCGTATCCAGACCCCGACTATGACGGTGTTGAAGAGATGATTCAATGTGGCATATGTGAAAACTGGTTTCATTTGGAGCATCTCAACATGGATAAAGGATTTC]
[-] EMBL CD096905 [TACTACAGGAAATTGATGAGGAGGACTGGATTACCATGGGTGGGATCGATGATAGATCTACCTGTACATTTACAAGGGTAACAAACAACTCATTCATTACGTAATGAATATACCGTACGGTATATAGGGATATGTAAAACGACAGGCGCTTTACACTTGTCATACATGCCTCAACATTGACCAGATAAAAGCTGCAATTTGCTTTCCTTGTGCAATTGTGTGTCATTCTGACCATGACATAGTTGAATTGTACACCAAACGCTATTTCAGATGTGACTGTGGCAACTCAAAATTTGCTGGTGTTTGTAATTGCCTATTGTGGGAGGAGAAGGACGATGAAAATGATTTAAACCAGTACAATGACAATTTTTCTAACCAATACTGCACGTGCCAACGTCCGTATCCAGACCCCGACTATGACGGTGTTGAAGAGATGATTCAATGTGGCATATGTGAAAACTGGTTTCATTTGGAGCATCTCAACATGGATAAAGGATTTC]
consensusID : consensus_9446#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 451 fasta sequence
[GGACGTGNGCACGTGCAGTATTGGTTAGAAAAATTGTCATTGTACTGGTTAAATCATTNTCATCGTCCTTCTCCTCCCACAATAGGCAATTACAAACACCAGCAAATTTTGAGTTGCCACAGTCACATCTGAAATAGCGTTTGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC-CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGTTTCCGCTACAAAGATTCAGTC]
[-] EMBL CD197966 [GGACGTGNGCACGTGCAGTATTGGTTAGAAAAATTGTCATTGTACTGGTTAAATCATTNTCATCGTCCTTCTCCTCCCACAATAGGCAATTACAAACACCAGCAAATTTTGAGTTGCCACAGTCACATCTGAAATAGCGTTTGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGTT ]
[+] EMBL CD190226 [ gcccTTACAAACACCAGAAAATTTTGAGTTGCCACAGACACATCTGAAATAGCGTTTGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGT ]
[-] EMBL CD111039 [ CACCAGCAAATTTTGAGTTGCCACAGTCACATCTGAAATAGCGTTTGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGTTTCCGCTACAAAGATTCAGTC]
[-] EMBL CD180705 [ GTTGCCACAGTCACATCTGAAATAGCGTTTGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGTT ]
[-] EMBL CD078180 [ TATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCTTCAATTTCCTGTAGTACATTCTCAATCTTCACACGCTGTATCT ]
[+] EMBL CD189237 [ CACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATA ]
[-] EMBL CD183293 [ ACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9446#0 ------------------------------------------------------------
consensus_9446#1 -------------------------------------TACTACAGGAAATTGATGAGGAG 23
consensus_9446#2 GGACGTGNGCACGTGCAGTATTGGTTAGAAAAATTGTCATTGTACTGGTTAAATCATTNT 60
consensus_9446#0 ------------------------------------------------------------
consensus_9446#1 GACTGGATTACCATGGGTGGGATCGATGAT-AGATCTACCTGTACATTTACAAGGGTAAC 82
consensus_9446#2 CATCGTCCTTCTCCTCCCACAATAGGCAATTACAAACACCAGCAAATTTTGAGTTGCCAC 120
consensus_9446#0 -----------------------TGGTGTACAATTCAAC-TAT-GTCATGGTCAGAATGA 35
consensus_9446#1 AAACAACTCATTCATTACGTAATGAATATACCGTACGGTATATAGGGATATGTAAAACGA 142
consensus_9446#2 AGTCACATCTGAAATAGCGT--TTGGTGTACAATTCAAC-TAT-GTCATGGTCAGAATGA 176
* *** * * *** * ** * ** **
consensus_9446#0 CACACAATT-GCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGT 94
consensus_9446#1 CAGGCGCTTTACACTTGTCATACATGCCTCAACATTGACCAGATAAAAGCTGCAATTTGC 202
consensus_9446#2 CACACAATT-GCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGT 235
** * ** *** * * ** ** * ** * * * ** * ** **
consensus_9446#0 ATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGT--AAATGTACAGGTAGAT 152
consensus_9446#1 TTTCCTTGTGCAAT-TGTGTGTCATTCTGACCATGACATAGTTGAATTGTACACCAAACG 261
consensus_9446#2 ATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGT--AAATGTACAGGTAGAT 293
* * *** ** * **** ** * ** * * ** ** ****** *
consensus_9446#0 CTATTTCAGATGTGACT-GTGGCAACTCAAAATTTGCTGGTGTTTGTAATTGCCTATTGT 211
consensus_9446#1 CTATTTCAGATGTGACT-GTGGCAACTCAAAATTTGCTGGTGTTTGTAATTGCCTATTGT 320
consensus_9446#2 CTATCATCGATCCCACCCATGGTAATCCAGT-CCTCCTCAT-----CAATTTCCTGTAGT 347
**** *** ** *** ** ** * ** * **** *** * **
consensus_9446#0 GGGAGGAGAAGGACGATGAAAATGATTTAAACCAGTACAATGACAATTTTTCTAACCAAT 271
consensus_9446#1 GGGAGGAGAAGGACGATGAAAATGATTTAAACCAGTACAATGACAATTTTTCTAACCAAT 380
consensus_9446#2 ---------------ACATTCTCAATCTTCACCACTGTATCT----TCTTCCTCACTATC 388
* ** * **** * * * ** ** ** *
consensus_9446#0 ACTGCACGTGC-CAACGTCCGTATCCAGACCCCGACTATGACGGTGTTGAAGAGATGATT 330
consensus_9446#1 ACTGCACGTGC-CAACGTCCGTATCCAGACCCCGACTATGACGGTGTTGAAGAGATGATT 439
consensus_9446#2 ACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGT--TTCCGCTACAAAGATT 446
*** * ** **** ** ** * * * ** * * * ****
consensus_9446#0 CAATGTGGCATATGTGAAAACTGGTTTCATTTGGAGCATCTCAACATGGATAAAGGATTT 390
consensus_9446#1 CAATGTGGCATATGTGAAAACTGGTTTCATTTGGAGCATCTCAACATGGATAAAGGATTT 499
consensus_9446#2 CAGTC------------------------------------------------------- 451
** *
consensus_9446#0 CAGCCACCCGAGGATTATAACGAAATGACCTGTTTTATGTGCATTAAAAAGTACGCGTTT 450
consensus_9446#1 C----------------------------------------------------------- 500
consensus_9446#2 ------------------------------------------------------------
consensus_9446#0 CTATTTATGCATGCATATGACACTGAGGAGACGTTTCGGCAATCTTGTCATTCAGCTACT 510
consensus_9446#1 ------------------------------------------------------------
consensus_9446#2 ------------------------------------------------------------
consensus_9446#0 TGTACAAAGAATAACAGCTTGGCTGAGGTTATAT 544
consensus_9446#1 ----------------------------------
consensus_9446#2 ----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||