These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [TGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATTTCAGATGTGACTGTGGCAACTCAAAATTTGCTGGTGTTTGTAATTGCCTATTGTGGGAGGAGAAGGACGATGAAAATGATTTAAACCAGTACAATGACAATTTTTCTAACCAATACTGCACGTGCCAACGTCCGTATCCAGACCCCGACTATGACGGTGTTGAAGAGATGATTCAATGTGGCATATGTGAAAACTGGTTTCATTTGGAGCATCTCAACATGGATAAAGGATTTCAGCCACCCGAGGATTATAACGAAATGACCTGTTTTATGTGCATTAAAAAGTACGCGTTTCTATTTATGCATGCATATGACACTGAGGAGACGTTTCGGCAATCTTGTCATTCAGCTACTTGTACAAAGAATAACAGCTTGGCTGAGGTTATAT] [+] EMBL CD201306 [TGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATTTCAGATGTGACTGTGGCAACTCAAAATTTGCTGGTGTTTGTAATTGCCTATTGTGGGAGGAGAAGGACGATGAAAATGATTTAAACCAGTACAATGACAATTTTTCTAACCAATACTGCACGTGCCAACGTCCGTATCCAGACCCCGACTATGACGGTGTTGAAGAGATGATTCAATGTGGCATATGTGAAAACTGGTTTCATTTGGAGCATCTCAACATGGATAAAGGATTTCAGCCACCCGAGGATTATAACGAAATGACCTGTTTTATGTGCATTAAAAAGTACGCGTTTCTATTTATGCATGCATATGACACTGAGGAGACGTTTCGGCAATCTTGTCATTCAGCTACTTGTACAAAGAATAACAGCTTGGCTGAGGTTATAT] consensusID : consensus_9446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [TACTACAGGAAATTGATGAGGAGGACTGGATTACCATGGGTGGGATCGATGATAGATCTACCTGTACATTTACAAGGGTAACAAACAACTCATTCATTACGTAATGAATATACCGTACGGTATATAGGGATATGTAAAACGACAGGCGCTTTACACTTGTCATACATGCCTCAACATTGACCAGATAAAAGCTGCAATTTGCTTTCCTTGTGCAATTGTGTGTCATTCTGACCATGACATAGTTGAATTGTACACCAAACGCTATTTCAGATGTGACTGTGGCAACTCAAAATTTGCTGGTGTTTGTAATTGCCTATTGTGGGAGGAGAAGGACGATGAAAATGATTTAAACCAGTACAATGACAATTTTTCTAACCAATACTGCACGTGCCAACGTCCGTATCCAGACCCCGACTATGACGGTGTTGAAGAGATGATTCAATGTGGCATATGTGAAAACTGGTTTCATTTGGAGCATCTCAACATGGATAAAGGATTTC] [-] EMBL CD096905 [TACTACAGGAAATTGATGAGGAGGACTGGATTACCATGGGTGGGATCGATGATAGATCTACCTGTACATTTACAAGGGTAACAAACAACTCATTCATTACGTAATGAATATACCGTACGGTATATAGGGATATGTAAAACGACAGGCGCTTTACACTTGTCATACATGCCTCAACATTGACCAGATAAAAGCTGCAATTTGCTTTCCTTGTGCAATTGTGTGTCATTCTGACCATGACATAGTTGAATTGTACACCAAACGCTATTTCAGATGTGACTGTGGCAACTCAAAATTTGCTGGTGTTTGTAATTGCCTATTGTGGGAGGAGAAGGACGATGAAAATGATTTAAACCAGTACAATGACAATTTTTCTAACCAATACTGCACGTGCCAACGTCCGTATCCAGACCCCGACTATGACGGTGTTGAAGAGATGATTCAATGTGGCATATGTGAAAACTGGTTTCATTTGGAGCATCTCAACATGGATAAAGGATTTC] consensusID : consensus_9446#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 451 fasta sequence [GGACGTGNGCACGTGCAGTATTGGTTAGAAAAATTGTCATTGTACTGGTTAAATCATTNTCATCGTCCTTCTCCTCCCACAATAGGCAATTACAAACACCAGCAAATTTTGAGTTGCCACAGTCACATCTGAAATAGCGTTTGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC-CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGTTTCCGCTACAAAGATTCAGTC] [-] EMBL CD197966 [GGACGTGNGCACGTGCAGTATTGGTTAGAAAAATTGTCATTGTACTGGTTAAATCATTNTCATCGTCCTTCTCCTCCCACAATAGGCAATTACAAACACCAGCAAATTTTGAGTTGCCACAGTCACATCTGAAATAGCGTTTGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGTT ] [+] EMBL CD190226 [ gcccTTACAAACACCAGAAAATTTTGAGTTGCCACAGACACATCTGAAATAGCGTTTGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGT ] [-] EMBL CD111039 [ CACCAGCAAATTTTGAGTTGCCACAGTCACATCTGAAATAGCGTTTGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGTTTCCGCTACAAAGATTCAGTC] [-] EMBL CD180705 [ GTTGCCACAGTCACATCTGAAATAGCGTTTGGTGTACAATTCAACTATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGTT ] [-] EMBL CD078180 [ TATGTCATGGTCAGAATGACACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCTTCAATTTCCTGTAGTACATTCTCAATCTTCACACGCTGTATCT ] [+] EMBL CD189237 [ CACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATA ] [-] EMBL CD183293 [ ACACAATTGCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGTATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGTAAATGTACAGGTAGATCTATCATCGATCCCACCCATGGTAATCCAGTCCTCCTCATCAATTTCCTGTAGTACATTCTCAATCTTCAC CACTGTATCTTCTTCCTCACTATCACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9446#0 ------------------------------------------------------------ consensus_9446#1 -------------------------------------TACTACAGGAAATTGATGAGGAG 23 consensus_9446#2 GGACGTGNGCACGTGCAGTATTGGTTAGAAAAATTGTCATTGTACTGGTTAAATCATTNT 60 consensus_9446#0 ------------------------------------------------------------ consensus_9446#1 GACTGGATTACCATGGGTGGGATCGATGAT-AGATCTACCTGTACATTTACAAGGGTAAC 82 consensus_9446#2 CATCGTCCTTCTCCTCCCACAATAGGCAATTACAAACACCAGCAAATTTTGAGTTGCCAC 120 consensus_9446#0 -----------------------TGGTGTACAATTCAAC-TAT-GTCATGGTCAGAATGA 35 consensus_9446#1 AAACAACTCATTCATTACGTAATGAATATACCGTACGGTATATAGGGATATGTAAAACGA 142 consensus_9446#2 AGTCACATCTGAAATAGCGT--TTGGTGTACAATTCAAC-TAT-GTCATGGTCAGAATGA 176 * *** * * *** * ** * ** ** consensus_9446#0 CACACAATT-GCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGT 94 consensus_9446#1 CAGGCGCTTTACACTTGTCATACATGCCTCAACATTGACCAGATAAAAGCTGCAATTTGC 202 consensus_9446#2 CACACAATT-GCACAAGGAAAGCAAATTGCAGCTTTTATTTGGTCAATGTTGAGGCATGT 235 ** * ** *** * * ** ** * ** * * * ** * ** ** consensus_9446#0 ATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGT--AAATGTACAGGTAGAT 152 consensus_9446#1 TTTCCTTGTGCAAT-TGTGTGTCATTCTGACCATGACATAGTTGAATTGTACACCAAACG 261 consensus_9446#2 ATGACAAGTGTAAAGCGCCTGTCGTTTTACATATCCCCTTGT--AAATGTACAGGTAGAT 293 * * *** ** * **** ** * ** * * ** ** ****** * consensus_9446#0 CTATTTCAGATGTGACT-GTGGCAACTCAAAATTTGCTGGTGTTTGTAATTGCCTATTGT 211 consensus_9446#1 CTATTTCAGATGTGACT-GTGGCAACTCAAAATTTGCTGGTGTTTGTAATTGCCTATTGT 320 consensus_9446#2 CTATCATCGATCCCACCCATGGTAATCCAGT-CCTCCTCAT-----CAATTTCCTGTAGT 347 **** *** ** *** ** ** * ** * **** *** * ** consensus_9446#0 GGGAGGAGAAGGACGATGAAAATGATTTAAACCAGTACAATGACAATTTTTCTAACCAAT 271 consensus_9446#1 GGGAGGAGAAGGACGATGAAAATGATTTAAACCAGTACAATGACAATTTTTCTAACCAAT 380 consensus_9446#2 ---------------ACATTCTCAATCTTCACCACTGTATCT----TCTTCCTCACTATC 388 * ** * **** * * * ** ** ** * consensus_9446#0 ACTGCACGTGC-CAACGTCCGTATCCAGACCCCGACTATGACGGTGTTGAAGAGATGATT 330 consensus_9446#1 ACTGCACGTGC-CAACGTCCGTATCCAGACCCCGACTATGACGGTGTTGAAGAGATGATT 439 consensus_9446#2 ACTAGGCATGTTCAACCGAGATAAGCAAAATCATATCATAGT--TTCCGCTACAAAGATT 446 *** * ** **** ** ** * * * ** * * * **** consensus_9446#0 CAATGTGGCATATGTGAAAACTGGTTTCATTTGGAGCATCTCAACATGGATAAAGGATTT 390 consensus_9446#1 CAATGTGGCATATGTGAAAACTGGTTTCATTTGGAGCATCTCAACATGGATAAAGGATTT 499 consensus_9446#2 CAGTC------------------------------------------------------- 451 ** * consensus_9446#0 CAGCCACCCGAGGATTATAACGAAATGACCTGTTTTATGTGCATTAAAAAGTACGCGTTT 450 consensus_9446#1 C----------------------------------------------------------- 500 consensus_9446#2 ------------------------------------------------------------ consensus_9446#0 CTATTTATGCATGCATATGACACTGAGGAGACGTTTCGGCAATCTTGTCATTCAGCTACT 510 consensus_9446#1 ------------------------------------------------------------ consensus_9446#2 ------------------------------------------------------------ consensus_9446#0 TGTACAAAGAATAACAGCTTGGCTGAGGTTATAT 544 consensus_9446#1 ---------------------------------- consensus_9446#2 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||