cluster # 9452

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Schistosoma mansoni
cluster # 9452 cluster # 9452 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9452#0 length = 667 sequences # 6
consensus_9452#1 length = 549 sequences # 1

consensus_9452#2 length = 371 sequences # 1
consensus_9452#3 length = 236 sequences # 1

consensusID : consensus_9452#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 667
fasta sequence

                              [TGACAAGGAATTGGTCTTTGTTGTGCGTTTAGTAGCTGGATTAGAGACATCACCAGAATGAATTGATGAACCATCGCTCAAACATTCATCCGTATCAGAATCAACTAGAGACTTGTCTCGTGCCGAATTCGGCACCATCATATGCTGCAACACTTGCAGTATTGATTATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGC-TTTTTTCGCATCAGATTCTGAGCCAACGTCTGTTTCACAAAAAACACAATTACTGCCTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCAACCCAAGTCCTGATGATCCTCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGATCACCCAGATTCTATTGAGTCGATTTGTGTGAACGTACAGTTGTTTTTTTCAACTTGTTATGATACC]

[-] EMBL AW017194             [TGACAAGGAATTGGTCTTTGTTGTGCGTTTAGTAGCTGGATTAGAGACATCACCAGAATGAATTGATGAACCATCGCTCAAACATTCATCCGTATCAGAATCAACTAGAGACTTGTCTCGTGCCGAATTCGGCACGAGCATATGCTGCAACACTTGCAGTATTGATTATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAG                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD139468             [                                                                                                                                      CCTTCATATGCTGCAACACTTGCAGTATTGATTATTACACCACGTTGA TATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGCTTTTTTTCGCATCAGATTCTGAGCCAACGTCTGTTTCACAAAAAACACAATTACTGCCTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTG                                                                                                                                        ]
[+] EMBL CD064228             [                                                                                                                                   acgaCATCATATGCTGCAACACTTGCAGTATTGATTA TACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGNCAAATCTACAGC TTTTTTCGCATCAGATTCTGAGCCAACGTCTGTTTCACAAAAAACACAATTA                                                                                                                                                                                                                          ]
[-] EMBL CD137299             [                                                                                                                                                        CTTGCAGTATTGATTATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGCTTTTTTTCGCATCAGATTCTGAGCCAACGTCTGTTTCACAAAAAACACAATTACTGCCTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCAACCCAAGTCCTGATGATCCTCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGATCACCCAGATTCTATTGA                                                 ]
[-] EMBL CD137005             [                                                                                                                                                        CTTGCAGTATTGATTATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATGAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGC TTTTTTCGCATCAGATTCTGAGCCAACGTCTGTTTCACAAAAAACACAATTACTGCCTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCGACCCAAGTCCTGATGATCCTCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGATCACCCAGATTCTATTGA                                                 ]
[-] EMBL CD186772             [                                                                                                                                                                                                                                                                                                                                                       ACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTGGGCCAAATCTACAGC TTTTTTCGCATCAGATTCTGAGCCAACGTCTGTTTCACAAAAAACACAATTACTGCCTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCAACCCAAGTCCTGTTGATCCTCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGATCACCCAGATTCTATTGAGTCGATTTGTGTGAACGTACAGTTGTTTTTTTCAACTTGTTATGATACC]




>consensus_9452#0
TGACAAGGAATTGGTCTTTGTTGTGCGTTTAGTAGCTGGATTAGAGACATCACCAGAATG
AATTGATGAACCATCGCTCAAACATTCATCCGTATCAGAATCAACTAGAGACTTGTCTCG
TGCCGAATTCGGCACCATCATATGCTGCAACACTTGCAGTATTGATTATTACACCACGTT
GATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGT
AAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTT
GCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATAT
GAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGCTTTTTTCGCATCAGATTCTGAGC
CAACGTCTGTTTCACAAAAAACACAATTACTGCCTAGTTCTGATAGCACAGGAGACTTTT
GTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCAACC
CAAGTCCTGATGATCCTCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGA
TCACCCAGATTCTATTGAGTCGATTTGTGTGAACGTACAGTTGTTTTTTTCAACTTGTTA
TGATACC

consensusID : consensus_9452#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [CAAAGATTATATATTTTGCTTGTAAATTGTCTACACACGATTATATACACAAAAAGAAAGTAAAATATGACATTGTCTTATACAAATATAAGTCTCCCTCCGCCATCTAGTCTTAAGGTAACACCGTTGATCATTGGATTTTGAAGAATGTTCATTACACAGGAACTAAATTCATCCGGTTTACCCATACGCTGTATTGCCAATTGAACATCATTTAAATAATCGAGATTAAATTGATTATATCCACGCTCTCCCATTATTGTCTTCGTATTAAGTAGACCTGGAGCAATGGAGACACACCGAATTCCTTCTCGTGCAAGATCACGAGCAACTGGCAACGTAAGACCAGCAATACCACCTTTACTTGCTGAATAAGCAGCTTGTCCAACTTGACCTTCATATGCTGCAACACTTGCAGTATTGATTATTACACCACGTTGATTACCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTGTTTAAAGATAATAGAAGTAATGAATTTT]

[+] EMBL AW017307             [CAAAGATTATATATTTTGCTTGTAAATTGTCTACACACGATTATATACACAAAAAGAAAGTAAAATATGACATTGTCTTATACAAATATAAGTCTCCCTCCGCCATCTAGTCTTAAGGTAACACCGTTGATCATTGGATTTTGAAGAATGTTCATTACACAGGAACTAAATTCATCCGGTTTACCCATACGCTGTATTGCCAATTGAACATCATTTAAATAATCGAGATTAAATTGATTATATCCACGCTCTCCCATTATTGTCTTCGTATTAAGTAGACCTGGAGCAATGGAGACACACCGAATTCCTTCTCGTGCAAGATCACGAGCAACTGGCAACGTAAGACCAGCAATACCACCTTTACTTGCTGAATAAGCAGCTTGTCCAACTTGACCTTCATATGCTGCAACACTTGCAGTATTGATTATTACACCACGTTGATTACCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTGTTTAAAGATAATAGAAGTAATGAATTTT]




>consensus_9452#1
CAAAGATTATATATTTTGCTTGTAAATTGTCTACACACGATTATATACACAAAAAGAAAG
TAAAATATGACATTGTCTTATACAAATATAAGTCTCCCTCCGCCATCTAGTCTTAAGGTA
ACACCGTTGATCATTGGATTTTGAAGAATGTTCATTACACAGGAACTAAATTCATCCGGT
TTACCCATACGCTGTATTGCCAATTGAACATCATTTAAATAATCGAGATTAAATTGATTA
TATCCACGCTCTCCCATTATTGTCTTCGTATTAAGTAGACCTGGAGCAATGGAGACACAC
CGAATTCCTTCTCGTGCAAGATCACGAGCAACTGGCAACGTAAGACCAGCAATACCACCT
TTACTTGCTGAATAAGCAGCTTGTCCAACTTGACCTTCATATGCTGCAACACTTGCAGTA
TTGATTATTACACCACGTTGATTACCAGCGTCTGGTTCATTCGCTATCATTAAACCAGAT
GCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTGTTTAAAGATAATAGAAGTA
ATGAATTTT

consensusID : consensus_9452#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [GATCACGAGCAACTGGCAACGTAAGACCAGCAATACCACCTTTACTTGCTGAATAAGCAGCTTGTCCAACTTGACCTTCATATGCCGCAACACTTGCAGTATTGATTATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGCTTTTTTCGCATCAGATTCTGAGCCAACGTTATGA]

[-] EMBL BG931743             [GATCACGAGCAACTGGCAACGTAAGACCAGCAATACCACCTTTACTTGCTGAATAAGCAGCTTGTCCAACTTGACCTTCATATGCCGCAACACTTGCAGTATTGATTATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTTGCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGCTTTTTTCGCATCAGATTCTGAGCCAACGTTATGA]




>consensus_9452#2
GATCACGAGCAACTGGCAACGTAAGACCAGCAATACCACCTTTACTTGCTGAATAAGCAG
CTTGTCCAACTTGACCTTCATATGCCGCAACACTTGCAGTATTGATTATTACACCACGTT
GATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGT
AAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTT
GCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATAT
GAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGCTTTTTTCGCATCAGATTCTGAGC
CAACGTTATGA

consensusID : consensus_9452#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [AAAAACACAAATACTGCNTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCAACCCAAGTCCTGATGATCCTCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGATCACCCAGATTCTATTGAGTCGATTTGTGTAACGTACAGTTGTTTTTTTCAACGTTGTTCCTTCGGTGCCGA]

[-] EMBL CD077522             [AAAAACACAAATACTGCNTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCAACCCAAGTCCTGATGATCCTCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGATCACCCAGATTCTATTGAGTCGATTTGTGTAACGTACAGTTGTTTTTTTCAACGTTGTTCCTTCGGTGCCGA]




>consensus_9452#3
AAAAACACAAATACTGCNTAGTTCTGATAGCACAGGAGACTTTTGTAAGTCACACACTAA
CACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCCAACCCAAGTCCTGATGATCC
TCCAGTTACGATTGCAGATAATCCTTTTAATGAGGCAAACATGATCACCCAGATTCTATT
GAGTCGATTTGTGTAACGTACAGTTGTTTTTTTCAACGTTGTTCCTTCGGTGCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9452#0      TGACAAGGAATTGGTCTTTGTTGTGCGTTTAGTAGCTGGATTAGAGACATCACCAGAATG 60
consensus_9452#3      ------------------------------------------------------------
consensus_9452#2      ------------------------------------------------------------
consensus_9452#1      ------------------------------------------------------------
                                                                                  

consensus_9452#0      AATTGATGAACCATCGCTCAAACATTCATCCGTATCAGAATCAACTAGAGACTTGTCTCG 120
consensus_9452#3      ------------------------------------------------------------
consensus_9452#2      ------------------------------------------------------------
consensus_9452#1      ------------------------------------------------------------
                                                                                  

consensus_9452#0      TGCCGAATTCGGCACCATCATATGCTGCAACACTTGCAGTATTGATTATTACACCACGTT 180
consensus_9452#3      ------------------------------------------------------------
consensus_9452#2      ------------------------------------------------------------
consensus_9452#1      ------------------------CAAAGATTATATATTTTGCTTGTAAATTGTCTACAC 36
                                                                                  

consensus_9452#0      GATTATCAGCGTCTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGT 240
consensus_9452#3      ------------------------------------------------------------
consensus_9452#2      ------------------------------------------------------------
consensus_9452#1      ACGATTATATACACAAAAAGAAAGTAAAATATGACATTGTCTTATACAAATATAAGTCTC 96
                                                                                  

consensus_9452#0      AAGTACCGATAAGGTTAGTCTTTATTACTTTCTCAAATAAATCCAGTGGATGAGGTGTTT 300
consensus_9452#3      ------------------------------------------------------------
consensus_9452#2      ------------------------------------------------------------
consensus_9452#1      CCTCCGCCATCTAGTCTTAAGGTAACACCGTTGATCATTGGATTTTGAAGAATGTTCATT 156
                                                                                  

consensus_9452#0      GCCGTGTGGTATTGAATGTTTTACAGGCCACTGCCAATCCAGCACAATTAACCAAAATAT 360
consensus_9452#3      ------------------------------------------------------------
consensus_9452#2      ------------------------------------------------------------
consensus_9452#1      ACACAGGAACTAAATTCATCCGGTTTACCCATACGCTGTATTGCCAATTGAACATCATTT 216
                                                                                  

consensus_9452#0      GAAGTTTTGAGAAATTTTTCTTGGCCAAATCTACAGCTTTTTTCGCATCAGATTCTGAGC 420
consensus_9452#3      ------------------------------------------------------------
consensus_9452#2      ------------------------GATCACGAGCAACTGGCAACGTAAGACCAGCAATAC 36
consensus_9452#1      AAATAATCGAGATTAAATTGATTATATCCACGCTCTCCCATTATTGTCTTCGTATTAAGT 276
                                                                                  

consensus_9452#0      CAACGTCTGTTTCACAAAAAACA-CAATTACTGCCTAGTTCTGATAGCACAGGAGACTTT 479
consensus_9452#3      ----------------AAAAACA-CAAATACTGCNTAGTTCTGATAGCACAGGAGACTTT 43
consensus_9452#2      CACCTTTACTTGCTGAATAAGCAGCTTGTCCAACTTGACCTTCATATGCCGCAACACTTG 96
consensus_9452#1      AGACCTGGAGCAATGGAGACACACCGAATTCCTTCTCGTGC-AAGATCACGAGCAACTGG 335
                                      * *  ** *   * *    *       * *   *     ***  

consensus_9452#0      T---GTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCC 536
consensus_9452#3      T---GTAAGTCACACACTAACACATTGCATCCTTCAGCAATTAGTTTTTTAGTTGTAGCC 100
consensus_9452#2      C---AGTATTGAT-TATTACACCACGTTGATTATCAGCGTCTGGTTCATTCGCTATCATT 152
consensus_9452#1      CAACGTAAGACCAGCAATACCACCTTTACTTGCTGAATAAGCAGCTTGTCCAACTTGACC 395
                             *       * **   *          * *       * *  *      *    

consensus_9452#0      AACCCAAGT-----CCTGATGATCCTCCAGTTACGATTGCAG-ATAATCCTTTTAA---- 586
consensus_9452#3      AACCCAAGT-----CCTGATGATCCTCCAGTTACGATTGCAG-ATAATCCTTTTAA---- 150
consensus_9452#2      AAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAAGG-TTAGTCTTTATTACTTT 211
consensus_9452#1      TTCATATGCT----GCAACACTTGCAGTATTGATTATTACACCACGTTGATTACCAGCGT 451
                           *         *      *     *   *    *         *  **   *    

consensus_9452#0      -TGAGGCAAACATGATCAC----CCAGAT-TCTATTGAGTCGATTTGTGTGAACGTACAG 640
consensus_9452#3      -TGAGGCAAACATGATCAC----CCAGAT-TCTATTGAGTCGATTTGTGT-AACGTACAG 203
consensus_9452#2      CTCAAATAAATCCAGTGGA----TGAGGTGTTTGCCGTGTGGTATTGAAT-GTTTTACAG 266
consensus_9452#1      CTGGTTCATTCGCTATCATTAAACCAGATGCAAGTCGAATCATATTGTAAGTACCGATAA 511
                       *     *       *         ** *       *  *    ***         * * 

consensus_9452#0      TTGTTTTT---TTCAAC----TTGTTATGATACC-------------------------- 667
consensus_9452#3      TTGTTTTT---TTCAACGTTGTTCCTTCGGTGCCGA------------------------ 236
consensus_9452#2      GCCACTGCCAATCCAGCACAATTAACCAAAATATGAAGTTTTGAGAAATTTTTCTTGGCC 326
consensus_9452#1      G-GTTAGTCTGTTTAAAG--ATAATAGAAGTAATGAATTTT------------------- 549
                                 *  *      *                                      

consensus_9452#0      ---------------------------------------------
consensus_9452#3      ---------------------------------------------
consensus_9452#2      AAATCTACAGCTTTTTTCGCATCAGATTCTGAGCCAACGTTATGA 371
consensus_9452#1      ---------------------------------------------