cluster # 9453

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Schistosoma mansoni
cluster # 9453 cluster # 9453 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9453#0 length = 364 sequences # 7

consensus_9453#1 length = 280 sequences # 2

consensusID : consensus_9453#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 364
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTACTGCTGGGAGTTATTTATTTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA-CAGCGAGATGATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTTACACACGCCGACTGACAGGA-ACCACGAGCTGGGCATGCGTATATATACGACTGG]

[+] EMBL AI395201             [TTTTTTTTTTTTTTTTTTTTTTTTTACTGCTGGGAGTTATTTATTTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA CAGCGAGATGATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTcctcgtg                                                 ]
[+] EMBL AI395440             [         TTTTTTTTTTTTTTTTACTGCTGGGAGTTATTTATTTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA CAGCGAGATGATTTAGAGCCAACAACAGACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGTAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTTACACACGCCGACTGACAGGA ACCACGAGCTGGGCAT                  ]
[+] EMBL AI395563             [         TTTTTTTTTTTTTTTTACTGCTGGGAGTTATTTATTTTACATTATGTAGAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA CAGCGAGATGATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACGGAGa                                                                   ]
[-] EMBL CD083545             [                           TGCTGGGAGTTATTTATTTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA CAGCGAGATGATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGC                                                          ]
[+] EMBL CD200812             [                         cggcCTGGAATTTATTTATTTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCTTTATGCATGAAACATCCACCGTGGGAGCGGGGAGATGATTTAAAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTTACACACGCCGACTGACAGGA ACCACGAGCTGGGCGTGCGTATATATACG     ]
[-] EMBL BG932412             [                                  AGTTATTTATTTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA CAGCGAGATGATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTA                                                                         ]
[-] EMBL CD150569             [                                            TTTACATTATGTATAGCTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGTTCCTTAAGCATGAGACATCCACCGTGGTA CAGCGAGATGATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTTACACACGCCGACTGGCAGGATACCACGAGCTGGGCATGCGTATATTGACGACTGG]




>consensus_9453#0
TTTTTTTTTTTTTTTTTTTTTTTTTACTGCTGGGAGTTATTTATTTTACATTATGTATAG
CTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGT
TCCTTAAGCATGAGACATCCACCGTGGTACAGCGAGATGATTTAGAGCCAACAACAAACA
CGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAG
GCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCAT
CGATCGCGTTACACACGCCGACTGACAGGAACCACGAGCTGGGCATGCGTATATATACGA
CTGG

consensusID : consensus_9453#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 280
fasta sequence

                              [GATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTTACACTGGAAATGAAAACAAAAATCGTTAGCTGCATCATAGATCAAGTAATATCAGAGGGAATTTTGACAGTCACATTGGGATATGAGACTCTAGTCCACAGTATCATCACAACACAAGAGCACATCAC]

[+] EMBL CD114475             [GATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGTTACACTGGAAATGAAAACAAAAATCGTTAGCTGCATCATAGATCAAGTAATATCAGAGGGAATTTTGACAGTCACATTGGGATATGAGACTCTAGTCCACAGTATCATCACAACACAAGAGCACATCAC]
[+] EMBL CD114379             [GATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACTAAATGGATAGCCATCACCGAACCGCTACTGAGCATCGATCGCGATACACTGGAAATGAAAACAAAAATCGTTAGCTGCATCATAGATCAAGTAATATCAGAGGGAATTTTGACAGTCACATTGGGATATGAGACTCCAGTCCACAGTATCATCACAACACAAGAGCACATCAC]




>consensus_9453#1
GATTTAGAGCCAACAACAAACACGTTGACTGTTTCATTGGTAATACACATGTCAGACGTC
ACTGTACTCCATTTCAGGACAGGCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCA
TCACCGAACCGCTACTGAGCATCGATCGCGTTACACTGGAAATGAAAACAAAAATCGTTA
GCTGCATCATAGATCAAGTAATATCAGAGGGAATTTTGACAGTCACATTGGGATATGAGA
CTCTAGTCCACAGTATCATCACAACACAAGAGCACATCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9453#0      TTTTTTTTTTTTTTTTTTTTTTTTTACTGCTGGGAGTTATTTATTTTACATTATGTATAG 60
consensus_9453#1      ------------------------------------------------------------
                                                                                  

consensus_9453#0      CTACATTCTGACAGTAGTCGGAATACCTGCATCTTGACGTACAATTGTCCTTCACAATGT 120
consensus_9453#1      ------------------------------------------------------------
                                                                                  

consensus_9453#0      TCCTTAAGCATGAGACATCCACCGTGGTACAGCGAGATGATTTAGAGCCAACAACAAACA 180
consensus_9453#1      --------------------------------------GATTTAGAGCCAACAACAAACA 22
                                                            **********************

consensus_9453#0      CGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAG 240
consensus_9453#1      CGTTGACTGTTTCATTGGTAATACACATGTCAGACGTCACTGTACTCCATTTCAGGACAG 82
                      ************************************************************

consensus_9453#0      GCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCAT 300
consensus_9453#1      GCAGAAGGCGTCGTGTGGCAAGACGAAATGGATAGCCATCACCGAACCGCTACTGAGCAT 142
                      ************************************************************

consensus_9453#0      CGATCGCGTTACACACGCCG-ACTGACAGGAACCACGAGCTGGGCATGCGTATATATACG 359
consensus_9453#1      CGATCGCGTTACACTGGAAATGAAAACAAAAATCGTTAGCTGCATCATAGATCAAGTAAT 202
                      **************  *        ***  ** *   *****       *   *  **  

consensus_9453#0      ACTGG------------------------------------------------------- 364
consensus_9453#1      ATCAGAGGGAATTTTGACAGTCACATTGGGATATGAGACTCTAGTCCACAGTATCATCAC 262
                      *   *                                                       

consensus_9453#0      ------------------
consensus_9453#1      AACACAAGAGCACATCAC 280