cluster # 9459

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Schistosoma mansoni
cluster # 9459 cluster # 9459 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9459#0 length = 567 sequences # 8

consensus_9459#1 length = 228 sequences # 1

consensusID : consensus_9459#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 567
fasta sequence

                              [AACAACTACAAAATACTAATAGGCACTACAGTTTTTAAGATCGTCTAACATATTTAGTTGCAACGAATGGCATTTTTGTAACTGTATATGGATAGAATTTTTGACGAATTTGAACAAAAA-GTTGTCGGTCATTTTCACAATATTCAGATTTCACATACGCCATTGCAATATTCTTACTCAATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATGGTCAAAGATTTTTGCACCATTTCTTGCTGGTGGACCTGATTCACAAATCAAACCGATTCGTTTATTTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCGGGTCTTTACACAAACGCCTTCGTTTTGAAATAAGCCATGATAGAGAAGCTTCGACTGGAGTTGTTTCCTCCGATATGTCGCTTCCATATAAACACAAGCCAGCTTCT-ATCTCAAGGTATCACGAGCAGCAGAGCCTCAGCAATCGGGATAGCTATTTCTGATGGGACACTGATTTCGTAACCATCTTCACCTGTGTATCCGCAACGT]

[+] EMBL CD181048             [AACAACTACAAAATACTAATAGGCACTACAGTTTTTAAGATCGTCTAACATATTTAGTTGCAACGAATGGCATTTTTGTAACTGTATATGGATAGAATTTTTGACGAATTTGAACAAAAA GTTGTCGGTCATTTTCACAATATTCAGATTTCACATACGCCATTGCAATATTCTTACTCAATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATGGTCAAAGATTTTTGCACCATTTCTTGCTGGTGGACCTGATTCACAAATCAAACCGATTCGTTTATTTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCGGGTCTTTACACAAACGCCTTCGTTTTGGAATAAGCCATGATAGAGAAGCTTCGACTGGAGTTGTTTCCTCCGATATGTCGCTTCCATATAAACACAAGCCAGCTT                                                                                                       ]
[+] EMBL CD162724             [AACAACTACAAAATACTAATAGGCACTACAGTTTTTAAGATCGTCTAACATATTTAGTTGCAACGAATGGCATTTTTGTAACTGTATATGGATAGAATTTTTGACGAATTTGAACAAAAA GTTGTCGGTCATTTTCACAATATTCGGATTTCACATACGCCATTGCAATATTCTTACTCAATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATGGTCAAAGATTTTTGCA                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD162788             [ ACAACTACAAAATACTAATAGGCACTACAGTTTTTAAGATCGTCTAACATATTTAGTTGCAACGAATGGCATTTTTGTAACTGTATATGGATAGAATTTTTGACGAATTTGAACAAAAA GTTGTCGGTCATTTTCACAATATTCAGATTTCACATACGCCATTGCAATATTCTTACTCAATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATGGTCAAAGATTTTTGCAC                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD180840             [ ACAACTACAAAATACTAATAGGCACTACAGTTTTTAAGATCGTCTAACATATTTAGTTGCAACGAATGGCATTTTTGTAACTGTATATGGATAGAATTTTTGACGAATTTGAGCAAAAA GTTGTCGGTCATTTTCACAATATTCAGATTTCACATACGCCATTGCAATATTCTTACTCAATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATGGTCAAAGATTTTTGCAC                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL AF155779             [                                                                      CATTTTTGTAACTGTATATGGATAG ATTTTTGACGAATTTGACCAAAAANGTGGTCGGTCATTTTCACAATATNCAGATTTCACATACGCCATTGCAACATTCTTACTCAATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATAGTCAAAGATTTTTGCACCGTTTCTTGCTGGTGGACCTGATTCACAAATCAAACCGATTCGTTTATTTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCGGGTCTTTACACAAACGCCTTCGTTTTGAAATAAGCCATGATAGAGA                                                                                                                                                                  ]
[-] EMBL CD135588             [                                                                                                                                                                                                                                                                                          ATCAAACCGATTCGTTTATTTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCGGGTCTTTACACAAACGCCTTCGTTTTGAAATAAGCCATGATAGAGAAGCTTCGACTGGAGTTGTTTCCTCCGATATGTCGCTTCCATATAAACACAAGCCAGCTTCTAATCTCAAGGTATCACGAGCAGCAGAGCCTCAGCAATCGGGATAGCTATTTCTGATGGGACACTGATTTCGTAACCATCTTCACCTGTGTATCCGCAACGT]
[-] EMBL CD154387             [                                                                                                                                                                                                                                                                                           TCAAACCGATTCGTTTATTTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCGGGTCTTTACACAAACGCCTTCGTTTTGGAATAAGCCATGATAGAGAAGCTTCGACTGGAGTTGTTTCCTCCGATATGTCGCTTCCATATAAACACAAGCCAGCTTCT ATCTCAAGGTATCACGAGCAGCAGAGCCTCAGCAATCGGGATAGCTATTTCTGATGGGACACTGATTTCGTAACCATCTTCACCTGTGTATCCGCAACGT]
[-] EMBL CD135647             [                                                                                                                                                                                                                                                                                           TCAAACCGATTCGTTTATTTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCGGGTCTTNACACAAACGCCTTCGTTTTGAAATAAGCCATGATAGAGAAGCTTCGACTGGAGTTGTTTCCTCCGATATGTCGCTTCCATATAAACACAAGCCAGCTTCTAATCTCAAGGTATCACGAGCAGCAGAGCCTCAGCAATCGGGATAGCTATTTCTGATGGGACACTGATTTCGTAACCATCTTCACCTGTGTATCCGCAACGT]




>consensus_9459#0
AACAACTACAAAATACTAATAGGCACTACAGTTTTTAAGATCGTCTAACATATTTAGTTG
CAACGAATGGCATTTTTGTAACTGTATATGGATAGAATTTTTGACGAATTTGAACAAAAA
GTTGTCGGTCATTTTCACAATATTCAGATTTCACATACGCCATTGCAATATTCTTACTCA
ATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATGGTCAA
AGATTTTTGCACCATTTCTTGCTGGTGGACCTGATTCACAAATCAAACCGATTCGTTTAT
TTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCG
GGTCTTTACACAAACGCCTTCGTTTTGAAATAAGCCATGATAGAGAAGCTTCGACTGGAG
TTGTTTCCTCCGATATGTCGCTTCCATATAAACACAAGCCAGCTTCTATCTCAAGGTATC
ACGAGCAGCAGAGCCTCAGCAATCGGGATAGCTATTTCTGATGGGACACTGATTTCGTAA
CCATCTTCACCTGTGTATCCGCAACGT

consensusID : consensus_9459#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 228
fasta sequence

                              [GTCTGGTAAGGAACTCTTCTGTCCAACCTATTGGATTAGCTGCTCGTGATACCTTGAGATTAGAAGCTGGCTTGTGTTTATATGGAAGCGACATATCGGAGGAAACAACTCCAGTCGAAGCTTCTCTATCATGGCTTATTCGTAAGTTTTAAATCATTGATATTCCAAGCATTTTACTTCATTTAGGGCTTCCGGGCAGTATCTCGGGCGACACAAACTAAAAGATGA]

[+] EMBL BG931469             [GTCTGGTAAGGAACTCTTCTGTCCAACCTATTGGATTAGCTGCTCGTGATACCTTGAGATTAGAAGCTGGCTTGTGTTTATATGGAAGCGACATATCGGAGGAAACAACTCCAGTCGAAGCTTCTCTATCATGGCTTATTCGTAAGTTTTAAATCATTGATATTCCAAGCATTTTACTTCATTTAGGGCTTCCGGGCAGTATCTCGGGCGACACAAACTAAAAGATGA]




>consensus_9459#1
GTCTGGTAAGGAACTCTTCTGTCCAACCTATTGGATTAGCTGCTCGTGATACCTTGAGAT
TAGAAGCTGGCTTGTGTTTATATGGAAGCGACATATCGGAGGAAACAACTCCAGTCGAAG
CTTCTCTATCATGGCTTATTCGTAAGTTTTAAATCATTGATATTCCAAGCATTTTACTTC
ATTTAGGGCTTCCGGGCAGTATCTCGGGCGACACAAACTAAAAGATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9459#0      AACAACTACAAAATACTAATAGGCACTACAGTTTTTAAGATCGTCTAACATATTTAGTTG 60
consensus_9459#1      ------------------------------------------------------------
                                                                                  

consensus_9459#0      CAACGAATGGCATTTTTGTAACTGTATATGGATAGAATTTTTGACGAATTTGAACAAAAA 120
consensus_9459#1      ------------------------------------------------------------
                                                                                  

consensus_9459#0      GTTGTCGGTCATTTTCACAATATTCAGATTTCACATACGCCATTGCAATATTCTTACTCA 180
consensus_9459#1      ------------------------------------------------------------
                                                                                  

consensus_9459#0      ATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATGGTCAA 240
consensus_9459#1      ------------------------------------------------------------
                                                                                  

consensus_9459#0      AGATTTTTGCACCATTTCTTGCTGGTGGACCTGATTCACAAATCAAACCGATTCGTTTAT 300
consensus_9459#1      ----------------------------------------------------------GT 2
                                                                                 *

consensus_9459#0      TTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCG 360
consensus_9459#1      CTGGTAAGGAACTCTTCTGTCCAACCTATTG------GATTAGCTGCTCGTGATACCTTG 56
                       *  *** * * *  * * *   *  *  *       ****       *  ** *  * *

consensus_9459#0      GGTCTTTACACAAACGCCTTCGTTTTGAAATAAGCCATGATAGAGAAGCTTCGACTGGAG 420
consensus_9459#1      AG--ATTAGAAGCTGGCTTGTGTTTATATGGAAGCGACATATCGGAGGAAACAACTCCAG 114
                       *   *** *     ** *  ****  *   **** *       ** *   * ***  **

consensus_9459#0      TTGTTTCCTCCGATATGTCGCTTCCATATAAACACAAGCCAGCTTCTATCTCAAG-GTAT 479
consensus_9459#1      TCGAAGCTTCTCTATCATGGCTTATTCGTAAGTTTTAAATCATTGATATTCCAAGCATTT 174
                      * *   * **       * ****     ***     *      *  ***  ****  * *

consensus_9459#0      CACGAGCAGCAGAGCCTCAGCAATCGGGATAGCTATTTCTGATGGGACACTGATTTCGTA 539
consensus_9459#1      TACTTCATTTAGGGCTTCCG----------GGCAGTATCTCGGGCGACACAAACTAAAAG 224
                       **       ** ** ** *           **  * ***   * *****  * *     

consensus_9459#0      ACCATCTTCACCTGTGTATCCGCAACGT 567
consensus_9459#1      ATGA------------------------ 228
                      *  *