These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9459#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 567 fasta sequence [AACAACTACAAAATACTAATAGGCACTACAGTTTTTAAGATCGTCTAACATATTTAGTTGCAACGAATGGCATTTTTGTAACTGTATATGGATAGAATTTTTGACGAATTTGAACAAAAA-GTTGTCGGTCATTTTCACAATATTCAGATTTCACATACGCCATTGCAATATTCTTACTCAATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATGGTCAAAGATTTTTGCACCATTTCTTGCTGGTGGACCTGATTCACAAATCAAACCGATTCGTTTATTTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCGGGTCTTTACACAAACGCCTTCGTTTTGAAATAAGCCATGATAGAGAAGCTTCGACTGGAGTTGTTTCCTCCGATATGTCGCTTCCATATAAACACAAGCCAGCTTCT-ATCTCAAGGTATCACGAGCAGCAGAGCCTCAGCAATCGGGATAGCTATTTCTGATGGGACACTGATTTCGTAACCATCTTCACCTGTGTATCCGCAACGT] [+] EMBL CD181048 [AACAACTACAAAATACTAATAGGCACTACAGTTTTTAAGATCGTCTAACATATTTAGTTGCAACGAATGGCATTTTTGTAACTGTATATGGATAGAATTTTTGACGAATTTGAACAAAAA GTTGTCGGTCATTTTCACAATATTCAGATTTCACATACGCCATTGCAATATTCTTACTCAATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATGGTCAAAGATTTTTGCACCATTTCTTGCTGGTGGACCTGATTCACAAATCAAACCGATTCGTTTATTTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCGGGTCTTTACACAAACGCCTTCGTTTTGGAATAAGCCATGATAGAGAAGCTTCGACTGGAGTTGTTTCCTCCGATATGTCGCTTCCATATAAACACAAGCCAGCTT ] [+] EMBL CD162724 [AACAACTACAAAATACTAATAGGCACTACAGTTTTTAAGATCGTCTAACATATTTAGTTGCAACGAATGGCATTTTTGTAACTGTATATGGATAGAATTTTTGACGAATTTGAACAAAAA GTTGTCGGTCATTTTCACAATATTCGGATTTCACATACGCCATTGCAATATTCTTACTCAATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATGGTCAAAGATTTTTGCA ] [-] EMBL CD162788 [ ACAACTACAAAATACTAATAGGCACTACAGTTTTTAAGATCGTCTAACATATTTAGTTGCAACGAATGGCATTTTTGTAACTGTATATGGATAGAATTTTTGACGAATTTGAACAAAAA GTTGTCGGTCATTTTCACAATATTCAGATTTCACATACGCCATTGCAATATTCTTACTCAATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATGGTCAAAGATTTTTGCAC ] [-] EMBL CD180840 [ ACAACTACAAAATACTAATAGGCACTACAGTTTTTAAGATCGTCTAACATATTTAGTTGCAACGAATGGCATTTTTGTAACTGTATATGGATAGAATTTTTGACGAATTTGAGCAAAAA GTTGTCGGTCATTTTCACAATATTCAGATTTCACATACGCCATTGCAATATTCTTACTCAATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATGGTCAAAGATTTTTGCAC ] [-] EMBL AF155779 [ CATTTTTGTAACTGTATATGGATAG ATTTTTGACGAATTTGACCAAAAANGTGGTCGGTCATTTTCACAATATNCAGATTTCACATACGCCATTGCAACATTCTTACTCAATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATAGTCAAAGATTTTTGCACCGTTTCTTGCTGGTGGACCTGATTCACAAATCAAACCGATTCGTTTATTTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCGGGTCTTTACACAAACGCCTTCGTTTTGAAATAAGCCATGATAGAGA ] [-] EMBL CD135588 [ ATCAAACCGATTCGTTTATTTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCGGGTCTTTACACAAACGCCTTCGTTTTGAAATAAGCCATGATAGAGAAGCTTCGACTGGAGTTGTTTCCTCCGATATGTCGCTTCCATATAAACACAAGCCAGCTTCTAATCTCAAGGTATCACGAGCAGCAGAGCCTCAGCAATCGGGATAGCTATTTCTGATGGGACACTGATTTCGTAACCATCTTCACCTGTGTATCCGCAACGT] [-] EMBL CD154387 [ TCAAACCGATTCGTTTATTTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCGGGTCTTTACACAAACGCCTTCGTTTTGGAATAAGCCATGATAGAGAAGCTTCGACTGGAGTTGTTTCCTCCGATATGTCGCTTCCATATAAACACAAGCCAGCTTCT ATCTCAAGGTATCACGAGCAGCAGAGCCTCAGCAATCGGGATAGCTATTTCTGATGGGACACTGATTTCGTAACCATCTTCACCTGTGTATCCGCAACGT] [-] EMBL CD135647 [ TCAAACCGATTCGTTTATTTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCGGGTCTTNACACAAACGCCTTCGTTTTGAAATAAGCCATGATAGAGAAGCTTCGACTGGAGTTGTTTCCTCCGATATGTCGCTTCCATATAAACACAAGCCAGCTTCTAATCTCAAGGTATCACGAGCAGCAGAGCCTCAGCAATCGGGATAGCTATTTCTGATGGGACACTGATTTCGTAACCATCTTCACCTGTGTATCCGCAACGT] consensusID : consensus_9459#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [GTCTGGTAAGGAACTCTTCTGTCCAACCTATTGGATTAGCTGCTCGTGATACCTTGAGATTAGAAGCTGGCTTGTGTTTATATGGAAGCGACATATCGGAGGAAACAACTCCAGTCGAAGCTTCTCTATCATGGCTTATTCGTAAGTTTTAAATCATTGATATTCCAAGCATTTTACTTCATTTAGGGCTTCCGGGCAGTATCTCGGGCGACACAAACTAAAAGATGA] [+] EMBL BG931469 [GTCTGGTAAGGAACTCTTCTGTCCAACCTATTGGATTAGCTGCTCGTGATACCTTGAGATTAGAAGCTGGCTTGTGTTTATATGGAAGCGACATATCGGAGGAAACAACTCCAGTCGAAGCTTCTCTATCATGGCTTATTCGTAAGTTTTAAATCATTGATATTCCAAGCATTTTACTTCATTTAGGGCTTCCGGGCAGTATCTCGGGCGACACAAACTAAAAGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9459#0 AACAACTACAAAATACTAATAGGCACTACAGTTTTTAAGATCGTCTAACATATTTAGTTG 60 consensus_9459#1 ------------------------------------------------------------ consensus_9459#0 CAACGAATGGCATTTTTGTAACTGTATATGGATAGAATTTTTGACGAATTTGAACAAAAA 120 consensus_9459#1 ------------------------------------------------------------ consensus_9459#0 GTTGTCGGTCATTTTCACAATATTCAGATTTCACATACGCCATTGCAATATTCTTACTCA 180 consensus_9459#1 ------------------------------------------------------------ consensus_9459#0 ATGTAGGTGAAAAACAACCACTTGTAATGACACCTATTTCCAGTTGCAAAGAATGGTCAA 240 consensus_9459#1 ------------------------------------------------------------ consensus_9459#0 AGATTTTTGCACCATTTCTTGCTGGTGGACCTGATTCACAAATCAAACCGATTCGTTTAT 300 consensus_9459#1 ----------------------------------------------------------GT 2 * consensus_9459#0 TTTTTAATGCATTTCTATTTTTCAGTTGATAAGTTATGATTGAGCAACCAGGAAATTTCG 360 consensus_9459#1 CTGGTAAGGAACTCTTCTGTCCAACCTATTG------GATTAGCTGCTCGTGATACCTTG 56 * *** * * * * * * * * * **** * ** * * * consensus_9459#0 GGTCTTTACACAAACGCCTTCGTTTTGAAATAAGCCATGATAGAGAAGCTTCGACTGGAG 420 consensus_9459#1 AG--ATTAGAAGCTGGCTTGTGTTTATATGGAAGCGACATATCGGAGGAAACAACTCCAG 114 * *** * ** * **** * **** * ** * * *** ** consensus_9459#0 TTGTTTCCTCCGATATGTCGCTTCCATATAAACACAAGCCAGCTTCTATCTCAAG-GTAT 479 consensus_9459#1 TCGAAGCTTCTCTATCATGGCTTATTCGTAAGTTTTAAATCATTGATATTCCAAGCATTT 174 * * * ** * **** *** * * *** **** * * consensus_9459#0 CACGAGCAGCAGAGCCTCAGCAATCGGGATAGCTATTTCTGATGGGACACTGATTTCGTA 539 consensus_9459#1 TACTTCATTTAGGGCTTCCG----------GGCAGTATCTCGGGCGACACAAACTAAAAG 224 ** ** ** ** * ** * *** * ***** * * consensus_9459#0 ACCATCTTCACCTGTGTATCCGCAACGT 567 consensus_9459#1 ATGA------------------------ 228 * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||