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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9464#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1896 fasta sequence
[TCGGCCAACTCCTTGGGATTTATATATTCAAGTGATTGTCCGCACCTTGAAGTAACTGTTTGCACGGAGATGACGCTTCGAGCTGGTGCGTCTAATATTTCTGTCTCGAGCATGGCGCCGCTACTTCACTCTATCATCTGTTGATGCAGTCATCGAATTGATGCGAGAAGTGTTTGTCAGCTGTGCAGGAGTCTTTTCTGATGAACAGACAGGCATGATGCATCTGACAGCTAATACCATCGATAACTCTGATATATGTGACATTGGAGTTGACTACTCCATCAGAGAACCTAATTTAGCTTTCATATCTATTGTATTAGGTTACATAGAAAATCATCTTACTTCTAGCACATCAGAAGACTTTGATTCCATAAAAATAAAAAATACTCTTCATCGCAAACTTGTATCCAAAAGAAAGGAAAATTTACTTCAAAATTATCCCCGTTCACGTTCATCTTCTCTTACAAAATCACAATCACCTTTATCTGTTCATCTTGAAACACCAGAAGAACATTCAGAAGGTTCTAATGATCACCTGGAATTGAGCAATAAGTTAAGTTCCATCCCCAGATCTTTGTCATCAAATGCATTCTTACAAGAAACTATTCACGAATCTCCTGTATGTCGCCGTCGTGCTAGACGATTTGGTTCTGCTCGTCGTGTTCGTCAACGAAACGAGTCTGAAGTATCTGCTTCTGCAGCAACCGCAATCGAATCTCCACTCACCATTGCTGCTAAAAATGAACCACTANCAATATTCACAGACATACCAGTCAGGAAGCGACGTCGATTTTCTGATAGCACTATACCAAATTCAGCTTTTCCATGTTTAACATTTGATGAACTTGAACGCTTGTACTTAGATTTCTACAATCTCATCACTAATTCCCCTAAATTGAAACCTCTTGTAGCAGACACAAGCAGTTTTACTAATGGATCAGAATCGAAAACACAGAAGTNTCACTGTACTTCAACAATAACGCCAGCAAAGAAATACGCATGTCGTGCACTTATTTGTGTCATATGTGAAGTTTTATGGAGCCAAATGACAGCTAGTCGTGTCAAAG-ACGATTGACGCACACACAAAGCGTATATTCTTTTCTAACAACGGGCATTCTAGATAGTTTCGGATTGGCGTATACAGTTGTAGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAAGACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGTTGGGTACAAGAGTCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCTCATGATGACTCAGTGCAACAAACAGAACACTCTAGGACCAGGAAAGCATCATCGTCTACTGAAGATGAACATAATCCACCTTCCATTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTAAGTGGATATCCGGTAGTTTGTCGTCCACGCATCATGGCTGTGGCTGCTGCGATTGCGGCGATACAACCAGGGGCTTCATTATCTGCTGTCACTCAAGCTCCAACTTCAGAACCTTTTGCTTATGGCACACTTTCACCGAATCCTTCAGTATCCTCCGGTGGTGACCTTATTACACCTACCGGCTTAGTTAAGCATTTATCATCAGCATCAGTGATCTCGATGCAGCTGGTTACATTAAAACATCAACTTTTATGGTTATGCTTCGATGCTGGTTGTCTATCACGTTATCCTTTAGGATTAACTAATTTAGGTGATTTAGAAGACGCATTTCCTACCATGGGACGACTTGCTACATATTTAAATTCATTACATTCGTCAGTTAAAACAAATTTAAAATGTACTAATGATTTAACGAATGAATTAAATGTTTTGGTGGATCAGTCCAACTATTCGTCA]
[+] EMBL CD138859 [TCGGCCAACTCCTTGGGATTTATATATTCAAGTGATTGTCCGCACCTTGAAGTAACTGTTTGCACGGAGATGACGCTTCGAGCTGGTGCGTCTAATATTTCTGTCTCGAGCATGGCGCCGCTACTTCACTCTATCATCTGTTGATGCAGTCATCGAATTGATGCGAGAAGTGTTTGTCAGCTGTGCAGGAGTCTTTTCTGATGAACAGACAGGCATGATGCATCTGACAGCTAATACCATCGATAACTCTGATATATGTGACATTGGAGTTGACTACTCCATCAGAGAACCTAATTTAGCTTTCATATCTATTGTATTAGGTTACATAGAAAATCATCTTACTTCTAGCACATCAGAAGACTTTGATTCCATAAAAATAAAAAATACTCTTCATCGCAGACTTGTATCCAAAAGAAAGGAAAATTTACTTCAGAATTATCCCCGTTCACGTTCATCTTCTCTTACAAAATCACAATCACCTTTATCTGTTCATCTTGAAACACCAGATGAACATTCAGAAGGTTCTAATGATCACCTGGAATTGAGCAAT ]
[+] EMBL CD154798 [ TATATGTGACATCGGAGTTGACTCCTCCATCAAAGAACCTAATTTAGCTTTCATATCTATTGTATTAGGTTACATAGAAAATCATCTTACTTCTAGCACATCAGAAGACTTTGATTCCATAAAAATAAAAAATACTCTTCATCGCAAACTTGTATCCAAAAGAAAGGAAAATTTACTTCAAAATTATCCCCGTTCACGTTCATCTTCTCTTACAAAATCACAATCACCTTTATCTGTTCATCTTGAAACACCAGAAGAACATTCAGAAGGTTCTAATGATCACCTGGAATTGAGCAATAAGTTAAGTTCCATCCCCAGATCTTTGTCATCAAATGCATTCTTACAAGAAACTATTCACGAATCTCCTGTATGTCGCCGTCGTGCTAGACGATTTGGTTCTGCTCGTCGTGTTCGTCAACGAAACGAGTCTGAAGTATCTGCTTCTGCAGCAACCGCAATCGAATCTCCACTCACCATTGCTGCTAAAAATGAACCACTANCAATATTCACAGACATACCAGTCAGGAAGCGACGTCGA ]
[-] EMBL CD117233 [ ATCATCTTACTTCTAGCACATCAGAAGACTTTGATTCCATAAAAATAAAAAATACTCTTCATCGCAAACTTGTATCCAAAAGAAAGGAAAATTTACTTCAAAATTATCCCCGTTCACGTTCATCTTCTCTTACAAAATCACAATCACCTTTATCTGTTCATCTTGAAACACCAGAAGAACATTCAGAAGGTTCTAATGATCACCTGGAATTGAGCAATAAGTTAAGTTCCATCCCCAG ]
[+] EMBL CD115820 [ CACCTTTATCTGTTCATCTTGAAACACCAGAAGAACATTCAGAAGGTTCTAATGATCACCTGGAATTGAGTAATAAGTTAAGTTCCATCCCCAGATCTTTGTCATCAAATGCATTCTTACAAGAAACTATTCACGAATCTCCTGTATGTCGCCGTCGTGCTAGACGATTTGGTTCTGCTCGTCGTGTTCGTCAACGGAACGAGTCTGAAGTATCTGCTTCTGCAGCAACCGCAATCGAATCTCCACTCACCATTGCTGCTAAAAATGAACCACTACAAATATTCACAGACATACCAGTCAGGAAGCGACGTCGATTTTCTGATAGCACTATACCAAATTCAGCTTTTCCATGTTTAACATTTGATGAACTTGAACGCTTGTACTTAGATTTCTACAATCTCATCACTAATTCCCCTAAATTGAAACCTCTTGTAGCAGACACAAGCAGTTTTACTAATGGATCAGAATCGAAAACACAGAAGTNTCACTGTACTTCAACAATAACGCCAGCAAAGAAATACGCATGTCGTGCACTTATTTGTGTCATATGTGAAGTTTTATGGAGCCAAATGACAGCTAGTCGCGTCTAAG ACGATTGACGCCCACACAAAGCGTATATT ]
[+] EMBL CD151841 [ AAAACACAGAAATTTCACTGTACTTCAACAATAACGCCAGCAAAGAAATACGCATGTCGTGCACTTATTTGTGTCATATGTGAAGTTTTATGGAGCCAAATGACAGCTAGTCGTGTCAAAGAACGATTGACGCACACACAAAGCGTATATTCTTTTCTAACAACGGGCATTCTAGATAGTTTCGGATTGGCGTATACAGTTGTAGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAAGACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGTTGGGTACAAGAGTCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCT ]
[-] EMBL CD117089 [ AGCCAAATGACAGCTAGTCGTGTCAAAGAACGATTGACGCACACACANAGCGTATATTCTTTTCTAACAACGGGCATTCTAGATAGTTTCGGATTGGCGTATACAGTTGTAGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAAGACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGTTGGGTACAAGAATCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCTCATGATGACTCAGTGCAACAAACAGAACACTCTAGGACCAGGAAAGCATCATCGTCTACTGAAGATGAACATAATCCACCTTCCATTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTAAGTGGATATCCGGTAGTTTGTCGTCCACGCATCATGGCTGTGGCTGCTGCGATTGCGGCGATACAACCAGGGGCTTCATTATCTGCTGTCACTCAAGCTCC ]
[+] EMBL CD146788 [ ACTCTAGGACCAGGAAAGCATCATCGTCTACTGAAGATGAACATAATCCACCTTCCATTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTAAGTGGATATCCGGTAGTTTGTCGTCCACGCATAATGGCTGTGGCTGCTGCGATTGCGGCGATACAACCAGGGGCTTCATTATCTGCTGTCACTCAAGCTCCAACTTCAGAACCTTTTGCTTATGGCACACTTTCACCGAATCCTTCAGTATCCTCCGGTGGTGACCTTATTACACCTACCGGCTTAGTTAAGCATTTATCATCAGCATCAGTGA ]
[-] EMBL CD179131 [ TACAACCAGGGGCTTCATTATCTGCTGTCACTCAAGCTCCAACTTCAGAACCTTTTGCTTATGGCACACTTTCACCGAATCCTTCAGTATCCTCCGGTGGTGACCTTATTACACCTACCGGCTTAGTTAAGCATTTATCATCAGCATCAGTGATCTCGATGCAGCTGGTTACATTAAAACATCAACTTTTATGGTTATGCTTCGATGCTGGTTGTCTATCACGTTATCCTTTAGGATTAACTAATTTAGGTGATTTAGAAGACGCATTTCCTACCATGGGACGACTTGCTACATATTTAAATTCATTACATTCGTCAGTTAAAACAAATTTAAAATGTACTAATGATTTAACGAATGAATTAAATGTTTTGGTGGATCAGTCCAACTATTCGTCA]
consensusID : consensus_9464#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence
[CCAGTAGAGCCACCCACCCTATGCTCGGATTGGCGTATACAGTTGTCGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAAGACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGTGGGGTACAAGAATCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCTCATGATGACTCAGTGCAACAAACAGAACACTCTAGGACCAGGAAAGCATCATCGTCTACTGAAGATGAACATAATCCACCTTCCACTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTAAGTGGATATCCGGTAGTT]
[+] EMBL CD162626 [CCAGTAGAGCCACCCACCCTATGCTCGGATTGGCGTATACAGTTGTCGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAAGACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGTGGGGTACAAGAATCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCTCATGATGACTCAGTGCAACAAACAGAACACTCTAGGACCAGGAAAGCATCATCGTCTACTGAAGATGAACATAATCCACCTTCCACTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTAAGTGGATATCCGGTAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9464#0 TCGGCCAACTCCTTGGGATTTATATATTCAAGTGATTGTCCGCACCTTGAAGTAACTGTT 60
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 TGCACGGAGATGACGCTTCGAGCTGGTGCGTCTAATATTTCTGTCTCGAGCATGGCGCCG 120
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 CTACTTCACTCTATCATCTGTTGATGCAGTCATCGAATTGATGCGAGAAGTGTTTGTCAG 180
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 CTGTGCAGGAGTCTTTTCTGATGAACAGACAGGCATGATGCATCTGACAGCTAATACCAT 240
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 CGATAACTCTGATATATGTGACATTGGAGTTGACTACTCCATCAGAGAACCTAATTTAGC 300
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 TTTCATATCTATTGTATTAGGTTACATAGAAAATCATCTTACTTCTAGCACATCAGAAGA 360
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 CTTTGATTCCATAAAAATAAAAAATACTCTTCATCGCAAACTTGTATCCAAAAGAAAGGA 420
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 AAATTTACTTCAAAATTATCCCCGTTCACGTTCATCTTCTCTTACAAAATCACAATCACC 480
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 TTTATCTGTTCATCTTGAAACACCAGAAGAACATTCAGAAGGTTCTAATGATCACCTGGA 540
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 ATTGAGCAATAAGTTAAGTTCCATCCCCAGATCTTTGTCATCAAATGCATTCTTACAAGA 600
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 AACTATTCACGAATCTCCTGTATGTCGCCGTCGTGCTAGACGATTTGGTTCTGCTCGTCG 660
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 TGTTCGTCAACGAAACGAGTCTGAAGTATCTGCTTCTGCAGCAACCGCAATCGAATCTCC 720
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 ACTCACCATTGCTGCTAAAAATGAACCACTANCAATATTCACAGACATACCAGTCAGGAA 780
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 GCGACGTCGATTTTCTGATAGCACTATACCAAATTCAGCTTTTCCATGTTTAACATTTGA 840
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 TGAACTTGAACGCTTGTACTTAGATTTCTACAATCTCATCACTAATTCCCCTAAATTGAA 900
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 ACCTCTTGTAGCAGACACAAGCAGTTTTACTAATGGATCAGAATCGAAAACACAGAAGTN 960
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 TCACTGTACTTCAACAATAACGCCAGCAAAGAAATACGCATGTCGTGCACTTATTTGTGT 1020
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 CATATGTGAAGTTTTATGGAGCCAAATGACAGCTAGTCGTGTCAAAGACGATTGACGCAC 1080
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 ACACAAAGCGTATATTCTTTTCTAACAACGGGCATTCTAGATAGTTTCGGATTGGCGTAT 1140
consensus_9464#1 ---------------------CCAGTAG-AGCCACCCACCCTATGCTCGGATTGGCGTAT 38
* * * * ** * ** **************
consensus_9464#0 ACAGTTGTAGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAA 1200
consensus_9464#1 ACAGTTGTCGCGGCCTGCCAACTCCTTGGTTATTCTGATGTAGACCTAGCATTATCTGAA 98
******** ***************************************************
consensus_9464#0 GACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGT 1260
consensus_9464#1 GACCACGGTTGGGTTGAATTCGGTCCTCCGGAATCTCGTCAGACAGCCGATGTAGCTAGT 158
************************************************************
consensus_9464#0 TGGGTACAAGAGTCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCTCAT 1320
consensus_9464#1 GGGGTACAAGAATCTCATACATCTGCCAGTTCGCATAATTCAGAATTCTCGAATTCTCAT 218
********** ************************************************
consensus_9464#0 GATGACTCAGTGCAACAAACAGAACACTCTAGGACCAGGAAAGCATCATCGTCTACTGAA 1380
consensus_9464#1 GATGACTCAGTGCAACAAACAGAACACTCTAGGACCAGGAAAGCATCATCGTCTACTGAA 278
************************************************************
consensus_9464#0 GATGAACATAATCCACCTTCCATTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTA 1440
consensus_9464#1 GATGAACATAATCCACCTTCCACTCGCATTCCACCACTCGAACATTCTTGGCTTTATGTA 338
********************** *************************************
consensus_9464#0 AGTGGATATCCGGTAGTTTGTCGTCCACGCATCATGGCTGTGGCTGCTGCGATTGCGGCG 1500
consensus_9464#1 AGTGGATATCCGGTAGTT------------------------------------------ 356
******************
consensus_9464#0 ATACAACCAGGGGCTTCATTATCTGCTGTCACTCAAGCTCCAACTTCAGAACCTTTTGCT 1560
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 TATGGCACACTTTCACCGAATCCTTCAGTATCCTCCGGTGGTGACCTTATTACACCTACC 1620
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 GGCTTAGTTAAGCATTTATCATCAGCATCAGTGATCTCGATGCAGCTGGTTACATTAAAA 1680
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 CATCAACTTTTATGGTTATGCTTCGATGCTGGTTGTCTATCACGTTATCCTTTAGGATTA 1740
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 ACTAATTTAGGTGATTTAGAAGACGCATTTCCTACCATGGGACGACTTGCTACATATTTA 1800
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 AATTCATTACATTCGTCAGTTAAAACAAATTTAAAATGTACTAATGATTTAACGAATGAA 1860
consensus_9464#1 ------------------------------------------------------------
consensus_9464#0 TTAAATGTTTTGGTGGATCAGTCCAACTATTCGTCA 1896
consensus_9464#1 ------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||