These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1302 fasta sequence [GAACAATCTGTCCTTGCATATTCATGATAGCAACTGTATTAGAACGACTAGCTACAACAAATTGATCTGTATTACGAGGCATTAAATGAACTGAATGAATTGATACTTCATGACCAACTAGACCAGATATTGCCTTAAATGTATTTGTACACTCTCCTGAACGAATTGACCATATGCGTACAGAACCATCAGCGCTTCCACTTATTATATTGTGTCCATCAGGTAAAAATGCTACAGAATTTACAACACCTGTATGACCAGTAAATTCTTTAATAATTTTACACGATTTCATTCCATGTATTCGAATGCTATGATCTAGACTAGCTGATAATATATGTGTATTATCTTTAGAGAATTGTATTGCTGTAACACCTTTAAGATGTGCTTTTTCTAAACGTTTTAAACATTGACCATTTTGTATACGCCAAATTTTAATTGTTCCCTCTTTAGCACCAGATGCTAACATTTCAGAATCACGACTAAATGTTAAACATAATACACTATCTTCCATCATCATAAATGTATCCTGAGCTTGATATTTTAGATCTTTTCTTAGCTTCCCAGTTGTAAAATTCCATACTTCAATGAAGCCATCAACTGAACCAGTCACTAAGAATTGACCATCTGGACTGAACCT-GGCACATTCGACATGACACTTTTGAACTACTCGTATAACAGTAGACAATTTAGTAGGTGGTTTTTCTTCTTCTTGTTCACGTACTGCAGCTTTACCACGAAATACATCAATTGCTGTACCAGGTGGTAACAATCCTTGATGTTGTTGCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTA-CTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATCTTTCGATTGACCATCTGAATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAACGATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCG--GTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTTTAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATC-GGATACAAAACTTTCTATAGATTCAACAGTATTCAATGATACTC-TTGTTTCTTCCTGTACTGTACGTAATGTTCGTAATAAATTACTTTCTTTTAAATACTGTTCTATTAAGCGGACTACATCAGCTGATTCGATTTCCGATATTCCATTAA] [+] EMBL CD098437 [GAACAATCTGTCCTTGCATATTCATGATAGCAACTGTATTAGAACGACTAGCTACAACAAATTGATCTGTATTACGAGGCATTAAATGAACTGAATGAATTGATACTTCATGACCAACTAGACCAGATATTGCCTTAAATGTATTTGTACACTCTCCTGAACGAATTGACCATATGCGTACAGAACCATCAGCGCTTCCACTTATTATATTGTGTCCATCAGGTAAAAATGCTACAGAATTTACAACACCTGTATGACCAGTAAATTCTTTAATAATTTTACACGATTTCATTCCATGTATTCGAATGCTATGATCTAGACTAGCTGATAATATATGTGTATTATCTTTAGAGAATTGTATTGCTGTAACACCTTTAAGATGTGCTTTTTCTAAACGTTTTAAACATTGACCATTTTGTATACGCCAAATTTTAATTGTTCCCTCTTTAGC ] [-] EMBL CD135364 [ TCTCCTGAACGAATTGACCATATGCGTACAGAACCATCAGCGCTTCCACTTATTATATTGTGTCCATCAGGTAAAAATGCTACAGAATTTACAACACCTGTATGACCAGTAAATTCTTTAATAATTTTACACGATTTCATTCCATGTATTCGAATGCTATGtagaggt ] [-] EMBL CD132876 [ AATTTTACACGATTTCATTCCATGTATTCGAGTGCTATGATCTAGACTAGCTGATAATATATGTGTATTATCTTTAGAGAATTGTATTGCTGTAACACCTNTATGATGTGCTTTTTCTAAACGTTTTAAACATTGACCATTTTGTATACGCCAAATTTTAATTGTTCCATCTTTAGCACCAGATGCTAACATTTCAGAATCACGACTAAATGTTAAACATAATACACTATCTTCCATCATCATAAATGTATCCTGAGCTTGATATTTTAGATCTTTTCTTAGCTTCCCAGTTGTAAAATTCCATACTTCAATGAAGCCATCAACTGAACCAGTCACTAAGAATTGACCATCTGGACTGAACCT GGCACATTCGACATGACACTTTTGAACTACTCGTATAACAGTAGACAATTTAGTAGGTGGTTTTTCTTCTTCTTGTTCACGTACTGCAGCTTTACCACGAAATACATCAATTGCTGTACCAGGTGGTAACAATCCTTGATGTTGTTGCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTA CTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATC ] [+] EMBL CD115937 [ attttaataAACCTAGGCACGTTCGACATGACACTTTTGAACTACTCGTATAACAGTAGACAATTTAGTAGGTGGTTTTTCTTCTTCTTGTTCACGTACTGCAGCTTTACCACGAAATACATCAATTGCTGTACCAGGTGGTAACAATCCTTGATGTTGTTGCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTA CTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATCTTTCGATTGACCATCTGAATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAACGATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCG GTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTCTAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATC GGATACAAAACTTTCTATAGATTCAACAGTATTCAATGATACTC TTGTTTCTTCCTGTACTGTACGTAATGTTCGTAATAAATCACTCTCTTTT AATACTGTTCTATTAAGCG ] [+] EMBL CD115675 [ ACTTTTGAACTACTCGTATAACAGTAGACAATTTAGTAGGTGGTTTTTCTTCTTCTTGTTCACGTACTGCAGCTTTACCACGAAATACATCAATTGCTGTACCAGGTGGTAACAATCCTTGATGTTGTTGCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTA CTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATCTTTCGATTGACCATCTGAATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAACGATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCG GTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTCTTGTTCTGGGAA TTTAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAAATATATCGGGATACAAAACTTTCTATAGATTCAACAGTATTCAATGATACTCTTTGTTTCTTCCTGTACTGGACGTAATGTTCGGAATAAATTACTTTCTTTTAAATACTGGTCTATTAAGCGG ] [-] EMBL CD115941 [ CTTNTGAACTACTCGTATACCAGTAGACAATTTAGTAGGTGG TNTTCTTCTTCTTGTTCACGAACTGCAGCTTTACCACGAAATACATCAATTGCTGTACCAGGTGGTAACAATCCTTGATGTTGTTGCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTA CTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATCTTTCGATTGACCATCTGAATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAACGATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCG GTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTTTAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATC GGATACAAAACTTTCTATAGATTCAACAGTATTCAATGATACTC TTGTTTCTTCCTGTACTGTACGTAATGTTCGTAATAAATTACTTTCTTTTAAATACTGTTCTATTAAGCG ] [-] EMBL CD130641 [ TGCAGCTTTACCACGAAATACATCAATGNCTGTACCAGGTGGTACAAATCCTTGATGTTGTGCCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTANCTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATCTTTCGATTGACCATCTGAATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAACGATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCGGNGTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTTTAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATC GGATACAAAACTTTCTATAGATTCAACAGTATTCAATGATACTC TTGTTTCTTCCTGTACTGTACGTAATGTTCGTAATAAATTACTTTCTTTTAAATACTGTTCTATTAAGCGTACTACATCAGCTGATTCGATTTCCGATATTCCATTAA] [-] EMBL CD146075 [ TTATCTTTCGATTGACCATCTGAATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAACGATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCG GTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTTAAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATC GGATACAAAAC ] consensusID : consensus_9468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence [TGTATCGGTAGATCTCCCATATGATTAACCTTCTGGCGGATGAGAATACGACATAGTCAAAATATGATGTAGACAGGGAGAAGGCTTAGGGGGTGGGCGTTTCATAGTAATCATTGGTTCGGTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTTAAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATCGGATACAAAAC] [-] EMBL CD146073 [TGTATCGGTAGATCTCCCATATGATTAACCTTCTGGCGGATGAGAATACGACATAGTCAAAATATGATGTAGACAGGGAGAAGGCTTAGGGGGTGGGCGTTTCATAGTAATCATTGGTTCGGTTTGTCTAAGGATTGATCTAGCTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCAATTTTTGTTCTGGTAATTTAAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCATTAATAATATCGGATACAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9468#0 GAACAATCTGTCCTTGCATATTCATGATAGCAACTGTATTAGAACGACTAGCTACAACAA 60 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 ATTGATCTGTATTACGAGGCATTAAATGAACTGAATGAATTGATACTTCATGACCAACTA 120 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 GACCAGATATTGCCTTAAATGTATTTGTACACTCTCCTGAACGAATTGACCATATGCGTA 180 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 CAGAACCATCAGCGCTTCCACTTATTATATTGTGTCCATCAGGTAAAAATGCTACAGAAT 240 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 TTACAACACCTGTATGACCAGTAAATTCTTTAATAATTTTACACGATTTCATTCCATGTA 300 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 TTCGAATGCTATGATCTAGACTAGCTGATAATATATGTGTATTATCTTTAGAGAATTGTA 360 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 TTGCTGTAACACCTTTAAGATGTGCTTTTTCTAAACGTTTTAAACATTGACCATTTTGTA 420 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 TACGCCAAATTTTAATTGTTCCCTCTTTAGCACCAGATGCTAACATTTCAGAATCACGAC 480 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 TAAATGTTAAACATAATACACTATCTTCCATCATCATAAATGTATCCTGAGCTTGATATT 540 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 TTAGATCTTTTCTTAGCTTCCCAGTTGTAAAATTCCATACTTCAATGAAGCCATCAACTG 600 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 AACCAGTCACTAAGAATTGACCATCTGGACTGAACCTGGCACATTCGACATGACACTTTT 660 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 GAACTACTCGTATAACAGTAGACAATTTAGTAGGTGGTTTTTCTTCTTCTTGTTCACGTA 720 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 CTGCAGCTTTACCACGAAATACATCAATTGCTGTACCAGGTGGTAACAATCCTTGATGTT 780 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 GTTGCCATTTAAGCGCCTGGCTAAGTAATGCCAGCAAACGTGACGGAGCTACAACGCTTA 840 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 CTTCTTCAGACAATGAAGTAGCCAGTGCTTGACGACGTTTATCTTTCGATTGACCATCTG 900 consensus_9468#1 -------------------------------------TGTATCGGTAGATCTCCCATATG 23 * **** * *** **** ** consensus_9468#0 AATAAGCCTCTCTTGGATCAAAATATGACCTATTCAAAAGATTATCTAAATGTGTATAAC 960 consensus_9468#1 ATTAACCTTCTGGCGGATGAGAATACGACATAGTCAAAATATGATGTAGACAGGGAGAAG 83 * *** * *** **** * **** *** ** ****** ** ** ** * * * ** consensus_9468#0 GATCAGGTTGTGTACGTTTCATAGTAATCATTGGTTCGGTTTGTCTAAGGATTGATCTAG 1020 consensus_9468#1 GCTTAGGGGGTGGGCGTTTCATAGTAATCATTGGTTCGGTTTGTCTAAGGATTGATCTAG 143 * * *** *** ********************************************** consensus_9468#0 CTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCA 1080 consensus_9468#1 CTGCACCAATATCACGTAGTTCTATCAATTCAATGATAATTTGTTCATATAAATCCATCA 203 ************************************************************ consensus_9468#0 ATTTTTGTTCTGGTAATTTTAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCAT 1140 consensus_9468#1 ATTTTTGTTCTGGTAATTTAAAATATTGTACAGTTTGTAAAACAATATCCCAATGACCAT 263 ******************* **************************************** consensus_9468#0 TAATAATATCGGATACAAAACTTTCTATAGATTCAACAGTATTCAATGATACTCTTGTTT 1200 consensus_9468#1 TAATAATATCGGATACAAAAC--------------------------------------- 284 ********************* consensus_9468#0 CTTCCTGTACTGTACGTAATGTTCGTAATAAATTACTTTCTTTTAAATACTGTTCTATTA 1260 consensus_9468#1 ------------------------------------------------------------ consensus_9468#0 AGCGGACTACATCAGCTGATTCGATTTCCGATATTCCATTAA 1302 consensus_9468#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||