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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 898 fasta sequence [TTGGTAGTATGGATATCCCGTTGGATAATTCA-GGCGGACCCCCAACTATTTTCAGTTCTGACCAGCCTATCAACATCTTGTCCCAAAACCAACTTCATATTTCGGAACCAGTAAATGATGTAAAAAATTCAAACCTAATCACTAATGAAACAAAATCAGAAAGTCATACCCTTACAGAACGCCTTATTCAGGCGGTTCAATTGCCCTCTGAACCCACTGGTCATTGTTCAATGGTACTTCAAGAAAGAGTAGAGCGAGCAGTGCGTCGTATGCGCTTGGATATAAGCTATGATCCTAACAGAGCAATTCAAGATAACAAAGCGTTCCGTAACCCCAGTATTTATGAAAAGCTGATCGATTTTTTGAAAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGACTGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGTACATAGAACCGAAGAAACCAAGTAAATGGGACACAGGTATTCCTTCCAACGTTCAACCCCATGACACATCCTCAGAATCTGTTAAGTTATCTGTTCCTCCCATTGGAAATTTGATCAAACGAAATTAAAACTAATTCAAATTACCAGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAAAATATTTTTCAATATGTTAATACAACAATAAAAGTGAAATACTCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCT] [-] EMBL CD140919 [TTGGTAGTATGGATATCCCGTTGGATAATTCA GGCGGACCCCCAACTATTTTCAGTTCTGACCAGCCTATCAACATCTTGTCCCAAAACCAACTTCATATTTCGGAACCAGTAAATGATGTAAAAAATTCAAACCTAATCACTAATGAAACAAAATCAGAAAGTCATACCCTTACAGAACGCCTTATTCAGGCGGTTCAATTGCCCTCTGAACCCACTGGCCATTGTTCAATGGTACTTCAAGAAAGAGTAGAGCGAGCAGTGCGTCGTATGCGCTTGG ] [+] EMBL CD082937 [ ATCCCGTTGGATAATTCAGGGCGGACCCCCAACTATTTTCAGTTCTGACCAGCCTATCAACATCTTGTCCCAAAACCAACTTCATATTTCGGAACCAGTAAATGATGTAAAAAATTCAAACCTAATCACTAATGAAACAAAATCAGAAAGTCCTACCCTTACAGAACGCCTTATTCAGGTGGTTCAATTGCCCTCTGAACCCACTGGTCATTGTTCAATGGTACTTCAAGAAAGAGTAGAGCGAGCAGTGCGTCGTATGCGCTTGGATATAAGCTATGATCCTAACAGAGCAATTCAAGATAACAAAGCGTTCCGTAACCCCAGTATTTATGAAAAGCTGATCGATTTTTTGAAAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGACTGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAANAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTC ] [+] EMBL CD083322 [ gcacgaggCGCCTTATTCAGGCGGTTCAATTGCCCTCTGAACCCACTGGTCATTGTTCAATGGTACTTCAAGAAAGAGTAGAGCGAGCAGTGCGTCGTATGCGCTTGGATATCAGCTATGATCCTAACAGAGCAATTCAAGATAACAAAGCGTTCCGTAACCCCAGTATTTATGAAAAGCTGATCGATTTTTTGAAAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGATAGACTGATGAAAATGCAAAAAGAACTTAAGAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGTACATAGAACCGAAGAAACC AGTTAATGGGACACAGGTA TCCTTCCA ] [-] EMBL CD076521 [ GCTTGGATATAAGCTATGATCCTAACAGAGCAATTCAAGATAACANAGCGTTCCGTAACCCCAGTATTTATGAAAAGCTGATCGATTTTTTGAAAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGACTGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGTACATAGAACCGAAGAAACCAAGTAAATGGGACACAGGTATTCCTTCCAACGTTCAACCCCATGACACATCCTCAGAATCTGTTAAGTTATCTGTTCCTCCCATTGGAAATTTGATCAAACGAAATTAAAACTAATTCAAATTACCAGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAAAATATTTTTCAATATGTTAATACAACAATAAAAGTGAA ] [-] EMBL AI067980 [ TTATGAAAAGCTGATCGATTTTTTGAAAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGACTGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGTACATAGAACCGAAGAAACCAAGTAAATGGGACACAGGTATTCCTTCCAACGTTCAACCCCATGACACATCCTCAGAATCTGTTAAGTTATCTGTTCCTCCCATTGGAAATTTGATCAAACGAAATTAAAACTAATTCAAATTACCAGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAAAATATTTTTCAATATGTTAATACAACAATAAAAGTGAAATACTCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCT] [-] EMBL AI067323 [ AAGGAACTAAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTGTACGGGGTACATAGAACCGAAGAAACCAAGTAAATGGGACACAGGTATTCCTTCCAACGTTCAACCCCATGACACATCCTCAGAATCTGTTAAGTTATCTGTTCCTCCCATTGGAAATTTGATCAAACGAAATTAAAACTAATTCAAATTACCAGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAAAATATTTTT ] consensusID : consensus_9470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [AAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGACTGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGTACATAGAGACTGTTACGCAATCTGATGTCTGGAAGGCCTTCGGAATAACATTACAGTCTTCTTTATCATCAGAATCTCGACTACAGAAATGTTGATCAAGTCTCTTCATATCCTCTGGAAAATTTGAATACAATAGTTTTTTTATGGATCGAATACGTTTGAAGACATCATCCANTTTCCTTTTTTAGTGATATTATTGTCTTTGTATGAGCAGTTAGTTCTGTAAACAGTATTTTACATCTTCCGTCAGAGAGCTCAGAACAGGTTCNGAAGCATCTC] [+] EMBL AA999214 [AAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGACTGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGTACATAGAGACTGTTACGCAATCTGATGTCTGGAAGGCCTTCGGAATAACATTACAGTCTTCTTTATCATCAGAATCTCGACTACAGAAATGTTGATCAAGTCTCTTCATATCCTCTGGAAAATTTGAATACAATAGTTTTTTTATGGATCGAATACGTTTGAAGACATCATCCANTTTCCTTTTTTAGTGATATTATTGTCTTTGTATGAGCAGTTAGTTCTGTAAACAGTATTTTACATCTTCCGTCAGAGAGCTCAGAACAGGTTCNGAAGCATCTC] consensusID : consensus_9470#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence [CTTGATTCAAATTATAAGCCTATCATACTTTTAATTTACAGAACCGAAGAAACCAAGTAAATGGGACACAGGTATTCCTTCCAACGTTCAACCCCATGACACATCCTCAGAATCTGTTAAGTTATCTGTTCCTCCCATTGGAAATTTGATCAAACGAATTAAAACTATTTCAATTACCAGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAAAATATTTTTCAATATGTTAATACAACAATAAAGGGAAATACTCACCATGTTAGCTTGTGTAAAAGAGATCTTTTGCTCCAATCAACAAACTGTCAGAGATAAACGTTTATGCGTAGATATATGAGTAGGATTAACTGAGGTCCATGAAGAACTGTCTCCTGCGTGTTGTGAGGCGACGCTGCTGCGATA] [+] EMBL AW146497 [CTTGATTCAAATTATAAGCCTATCATACTTTTAATTTACAGAACCGAAGAAACCAAGTAAATGGGACACAGGTATTCCTTCCAACGTTCAACCCCATGACACATCCTCAGAATCTGTTAAGTTATCTGTTCCTCCCATTGGAAATTTGATCAAACGAATTAAAACTATTTCAATTACCAGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAAAATATTTTTCAATATGTTAATACAACAATAAAGGGAAATACTCACCATGTTAGCTTGTGTAAAAGAGATCTTTTGCTCCAATCAACAAACTGTCAGAGATAAACGTTTATGCGTAGATATATGAGTAGGATTAACTGAGGTCCATGAAGAACTGTCTCCTGCGTGTTGTGAGGCGACGCTGCTGCGATA] consensusID : consensus_9470#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [GGTGCTGATCATATATCTATGCATAAACGTTTATCTCTTGACAGTTGTTGATTGGAGCAAATGATCTCTTGTAACAAGCTAACATGGTTGAGTATTTCATTTTATAGTTGTATTAACATATAGAAAAATATTTTCGAAAAATTATAGAGAGAGCAGCTTATTTCAAAGTTATTATCTGGTAA] [+] EMBL CD134436 [GGTGCTGATCATATATCTATGCATAAACGTTTATCTCTTGACAGTTGTTGATTGGAGCAAATGATCTCTTGTAACAAGCTAACATGGTTGAGTATTTCATTTTATAGTTGTATTAACATATAGAAAAATATTTTCGAAAAATTATAGAGAGAGCAGCTTATTTCAAAGTTATTATCTGGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9470#2 ------------------------------------------------------------
consensus_9470#0 TTGGTAGTATGGATATCCCGTTGGATAATTCAGGCGGACCCCCAACTATTTTCAGTTCTG 60
consensus_9470#1 ------------------------------------------------------------
consensus_9470#3 ------------------------------------------------------------
consensus_9470#2 ------------------------------------------------------------
consensus_9470#0 ACCAGCCTATCAACATCTTGTCCCAAAACCAACTTCATATTTCGGAACCAGTAAATGATG 120
consensus_9470#1 ------------------------------------------------------------
consensus_9470#3 ------------------------------------------------------------
consensus_9470#2 ------------------------------------------------------------
consensus_9470#0 TAAAAAATTCAAACCTAATCACTAATGAAACAAAATCAGAAAGTCATACCCTTACAGAAC 180
consensus_9470#1 ------------------------------------------------------------
consensus_9470#3 ------------------------------------------------------------
consensus_9470#2 ------------------------------------------------------------
consensus_9470#0 GCCTTATTCAGGCGGTTCAATTGCCCTCTGAACCCACTGGTCATTGTTCAATGGTACTTC 240
consensus_9470#1 ------------------------------------------------------------
consensus_9470#3 ------------------------------------------------------------
consensus_9470#2 ------------------------------------------------------------
consensus_9470#0 AAGAAAGAGTAGAGCGAGCAGTGCGTCGTATGCGCTTGGATATAAGCTATGATCCTAACA 300
consensus_9470#1 ------------------------------------------------------------
consensus_9470#3 ------------------------------------------------------------
consensus_9470#2 ------------------------------------------------------------
consensus_9470#0 GAGCAATTCAAGATAACAAAGCGTTCCGTAACCCCAGTATTTATGAAAAGCTGATCGATT 360
consensus_9470#1 ------------------------------------------------------------
consensus_9470#3 ------------------------------------------------------------
consensus_9470#2 ------------------------------------------------------------
consensus_9470#0 TTTTGAAAATCGACGAGAAAGGGACTAACTTCTCTACGGATATTTATGATCCCTATCGTT 420
consensus_9470#1 ------------------------------------------------------------
consensus_9470#3 ------------------------------------------------------------
consensus_9470#2 ------------------------------------------------------------
consensus_9470#0 GGACTCCGCAGTCATACTATGAAGAACTTGCAAAGGTGCAAAATCGTGAAATCGACAGAC 480
consensus_9470#1 ------------------------------------------------------------
consensus_9470#3 ------------------------------------------------------------
consensus_9470#2 ------------------------------------------------------------
consensus_9470#0 TGATGAAAATGCAAAAAGAACTTAAAAAATCTGACCCAAATACAACGAATGCAAACAACA 540
consensus_9470#1 -------------------------------------AAATCGACGAGAAAGGGACTAAC 23
consensus_9470#3 ------------------------------------------------------------
consensus_9470#2 -----------------------------------------------CTTGATTCAAATT 13
consensus_9470#0 GCACAAGTGCAAATGCACCTAAAAATCCAATTACTAGCACAGACAAACCCAGTGCAACAT 600
consensus_9470#1 TTCTCTACGGATATTTATGATCCCTATCGTTGGACTCCGCAGTCATACTATGAAGAACTT 83
consensus_9470#3 ------------------------------------------------------------
consensus_9470#2 ATAAGCCTATCATACTTTTA--ATTTACAGAACCGAAGAAACCAAGTAAATGGGACACAG 71
consensus_9470#0 CTGGAGGGTCCGTTTCTACGGGGTACATAGAACCGAAGAAACCAAGTAAATGGGACACAG 660
consensus_9470#1 GCAAAGGTGCAAAATCGTGAA-ATCGACAGA-CTGATGAAA--ATGCAAAAAGAACTTAA 139
consensus_9470#3 ----------------------------------------------GGTGCTGATCATAT 14
* * *
consensus_9470#2 GTATTCCTTCCAACGTTCAACC--------CCATGACACATCCTCAGAATCTGTTAAGTT 123
consensus_9470#0 GTATTCCTTCCAACGTTCAACC--------CCATGACACATCCTCAGAATCTGTTAAGTT 712
consensus_9470#1 AAAATCTGACCCAAATACAACGAATGCAAACAACAGCACAAGTGCAAATGCACCTAAAAA 199
consensus_9470#3 ATCTATGCATAAACGTTTATCT---------CTTGACAGTTGTT--GATTGGAGCAAATG 63
* * * * ** * **
consensus_9470#2 ATCTGTTCCTCCCA-TTGG-AAATTTGATCAAACGAA-TTAAAA-CTATTTCAA-TTACC 178
consensus_9470#0 ATCTGTTCCTCCCA-TTGG-AAATTTGATCAAACGAAATTAAAA-CTAATTCAAATTACC 769
consensus_9470#1 TCCAATTACTAGCA-CAGACAAACCCAGTGCAACATCTGGAGGGTCCGTTTCTACGGGGT 258
consensus_9470#3 ATCTCTTGTAACAAGCTAACATGGTTGAGTATTTCATTTTATAG-TTGTATTAACATATA 122
* ** * * * * *
consensus_9470#2 AGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAA---------AATATT 229
consensus_9470#0 AGATAATAACTTTGAAATAAGCTGCTCTTTTTATAATTTTTCGAA---------AATATT 820
consensus_9470#1 ACATAGAGACTGTTACGCAATCTGATGTCTGGAAGGCCTTCGGAATAACATTACAGTCTT 318
consensus_9470#3 GAAAAATATTTTCGAAAAATTATAGAGAGAGCAGCTTATTTCAAA---------GTTATT 173
* * * * * * * ** ** * **
consensus_9470#2 TTTCAATATGTTAAT----ACAACAATAAAGG-GA--AATACTCACCATGTT-------- 274
consensus_9470#0 TTTCAATATGTTAAT----ACAACAATAAAAGTGA--AATACTCAAAAAAAA-------- 866
consensus_9470#1 CTTTATCATCAGAATCTCGACTACAGAAATGTTGATCAAGTCTCTTCATATCCTCTGGAA 378
consensus_9470#3 ATCTGGTAA--------------------------------------------------- 182
* *
consensus_9470#2 AGCTTGTGTAAAAGAGATCTTTT---GCTCCAATCAACAAACTGTCAGAGATAAACGTTT 331
consensus_9470#0 AAAAAAAAAAAAAAAAAACATGC---CATGCAGCT------------------------- 898
consensus_9470#1 AATTTGAATACAATAGTTTTTTTATGGATCGAATACGTTTGAAGACATCATCCANTTTCC 438
consensus_9470#3 ------------------------------------------------------------
consensus_9470#2 ATGCGTAGATATATGAGTAGGATTAACTGAG------GTCCATGAAGAACTGTCTCCTGC 385
consensus_9470#0 ------------------------------------------------------------
consensus_9470#1 TTTTTTAGTGATATTATTGTCTTTGTATGAGCAGTTAGTTCTGTAAACAGTATTTTACAT 498
consensus_9470#3 ------------------------------------------------------------
consensus_9470#2 GTGTTGTGAGGCGACGCTGCTGCGATA------------ 412
consensus_9470#0 ---------------------------------------
consensus_9470#1 CTTCCGTCAGAGAGCTCAGAACAGGTTCNGAAGCATCTC 537
consensus_9470#3 ---------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||