cluster # 9472

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Schistosoma mansoni
cluster # 9472 cluster # 9472 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9472#0 length = 591 sequences # 8

consensus_9472#1 length = 241 sequences # 1

consensusID : consensus_9472#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 591
fasta sequence

                              [AAGAGAGAAGGTGGAAAAATCCCTAAGAAGACAATCGAAATAGAAACTGTAGAAGAAACTACGAAGAAAGGAGCTCCTCGTATTCCAAGAAAAACAATTGGAATAGAAACTGTAGTGGAAACAATTGATAAGGGAGTTCCACGTATTCCAAAACGTAGAATTGAAATAGAAACTGTAGTGGATGCAACAAAGAGAAAGAAGAAAATAGATAAAGTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTGGTTTTAAGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTTGCTGGAGTGGCCGCTTATAAGGACTGTTATTTTCTACACATTATTTA]

[+] EMBL CD145107             [AAGAGAGAAGGTGGAAAAATCCCTAAGAAGACAATCGAAATAGAAACTGTAGAAGAAACTACGAAGAAAGGAGCTCCTCGTATTCCAAGAAAAACAATTGGAATAGAAACTGTAGTGGAAACAATTGATAAGGGAGTTCCACGTATTCCAAAACGTAGAATTGAAATAGAAACTGTAGTGGATGCAACAAAGAGAAAGAAGAAAATAGATAAAGTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTGGTTTTAAGGTAGGTGGTAAACGAACTGGTAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGCTGGTGGCATTAAAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTTGCTGGAGTGGCCGCTTATAAGGACTGTTATTTTCTACACATTA    ]
[-] EMBL CD135249             [                                                                                                                                       GTTCCACGTATTCCAAAACGTAGAATTGAAATAGAAACTGTAGTGGATGCCCCAAAGAGAAAGAAGAAAATAGATAAAGTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTGGTTTTAAGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTAGAG                                                                 ]
[-] EMBL CD146508             [                                                                                                                                                       AACGTAGAATTGAAATAGAAACTGTAGTGGATGCAACAAAGAGAAAGAAGAAAATAGATAAAGTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTGGTTTTAAGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTA                                                                               ]
[+] EMBL CD135147             [                                                                                                                                                                                                                     GTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTGGTTTTAAGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGT                                                                                 ]
[+] EMBL CD145147             [                                                                                                                                                                                                                                                                                           AGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTTGCTGGAGTGGCCGCTTATAAGGACTGTTATTTTCTACACATTA    ]
[+] EMBL CD145083             [                                                                                                                                                                                                                                                                                           AGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCGCATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTTGCTGGAGTGGTCGCTTATAAGGACTGTTATTTTCTACACATTA    ]
[+] EMBL CD145042             [                                                                                                                                                                                                                                                                                           AGGTAGGTGGTAAACGAACTGGGAATCGGCACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTTGCTGGAGTGGCCGCTTATAAGGACTGTTATTTTCTACACATTA    ]
[+] EMBL CD145069             [                                                                                                                                                                                                                                                                                           AGGTAGGTGGTAAACGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCTGGGTTCGTGGATGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCTCGTTGCTGGAGTGGCCGTTTATAAGGACTGTTATTTTCTACACATTATTTA]




>consensus_9472#0
AAGAGAGAAGGTGGAAAAATCCCTAAGAAGACAATCGAAATAGAAACTGTAGAAGAAACT
ACGAAGAAAGGAGCTCCTCGTATTCCAAGAAAAACAATTGGAATAGAAACTGTAGTGGAA
ACAATTGATAAGGGAGTTCCACGTATTCCAAAACGTAGAATTGAAATAGAAACTGTAGTG
GATGCAACAAAGAGAAAGAAGAAAATAGATAAAGTCATTGATACAGTCAAAGTTTTATTC
CGACCACCAAAACGAAGACCAATAACCATAAGAGGTGGTTTTAAGGTAGGTGGTAAACGA
ACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGCATT
AGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGTTGC
CGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGA
GCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGAGCT
CGTTGCTGGAGTGGCCGCTTATAAGGACTGTTATTTTCTACACATTATTTA

consensusID : consensus_9472#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [AATATCACTGAATTCCTGCTATTTTCCAACTTTGTCTTGTTTAGTGATTATGTAACACAGATATATTTCTCTTTCATATTTCTAGATAAAGTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTAGTATTTTTCAATATCTATAATTTTATTTTAAATTAATCACATGAATACTTATGATTTAGTTTTCGAACTTAACAAAAGCACTGATAT]

[+] EMBL CD135318             [AATATCACTGAATTCCTGCTATTTTCCAACTTTGTCTTGTTTAGTGATTATGTAACACAGATATATTTCTCTTTCATATTTCTAGATAAAGTCATTGATACAGTCAAAGTTTTATTCCGACCACCAAAACGAAGACCAATAACCATAAGAGGTAGTATTTTTCAATATCTATAATTTTATTTTAAATTAATCACATGAATACTTATGATTTAGTTTTCGAACTTAACAAAAGCACTGATAT]




>consensus_9472#1
AATATCACTGAATTCCTGCTATTTTCCAACTTTGTCTTGTTTAGTGATTATGTAACACAG
ATATATTTCTCTTTCATATTTCTAGATAAAGTCATTGATACAGTCAAAGTTTTATTCCGA
CCACCAAAACGAAGACCAATAACCATAAGAGGTAGTATTTTTCAATATCTATAATTTTAT
TTTAAATTAATCACATGAATACTTATGATTTAGTTTTCGAACTTAACAAAAGCACTGATA
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9472#0      AAGAGAGAAGGTGGAAAAATCCCTAAGAAGACAATCGAAATAGAAACTGTAGAAGAAACT 60
consensus_9472#1      ------------------------------------------------------------
                                                                                  

consensus_9472#0      ACGAAGAAAGGAGCTCCTCGTATTCCAAGAAAAACAATTGGAATAGAAACTGTAGTGGAA 120
consensus_9472#1      ------------------------------------------------------------
                                                                                  

consensus_9472#0      ACAATTGATAAGGGAGTTCCACGTATTCCAAAACGTAGAATTGAA-ATAGAAACTGTAGT 179
consensus_9472#1      --AAT--ATCACTGAATTCCTGCTATTTTCCAACTTTGTCTTGTTTAGTGATTATGTAAC 56
                        ***  ** *  ** ****   ****    *** * *  ***   *  **   ****  

consensus_9472#0      GGATGCAACAAAGAGAAAGAAGAAAATAGATAAAGTCATTGATACAGTCAAAGTTTTATT 239
consensus_9472#1      ACAGATATATTTCTCTTTCATATTTCTAGATAAAGTCATTGATACAGTCAAAGTTTTATT 116
                        *   *            *      **********************************

consensus_9472#0      CCGACCACCAAAACGAAGACCAATAACCATAAGAGGTGGT--TTTAAGGTAGGTGGTAAA 297
consensus_9472#1      CCGACCACCAAAACGAAGACCAATAACCATAAGAGGTAGTATTTTTCAATATCTA-TAAT 175
                      ************************************* **  ***    **  *  *** 

consensus_9472#0      CGAACTGGGAATCGATACATACGCGTACATGCTGGAGGGAGAAGGAGATGTGGTGGTGGC 357
consensus_9472#1      TTTATTTTAAATTAAT-CACATGAATACTTA-TGATTTAGTTTTCGAACTTAACAAAAGC 233
                         * *   ***  ** ** * *  *** *  **             *  *       **

consensus_9472#0      ATTAGAATACGTGCAGGAGGATGTTGTAGAGTTAGAGGAGGCTGCAGGGTTCGTGGATGT 417
consensus_9472#1      ACTGATAT---------------------------------------------------- 241
                      * *   **                                                    

consensus_9472#0      TGCCGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGC 477
consensus_9472#1      ------------------------------------------------------------
                                                                                  

consensus_9472#0      CGAGCTCGTGGGTGCTGCAGGGCTCGCACATGTTACCGTCGTGGTGGAGGTTGTTGCCGA 537
consensus_9472#1      ------------------------------------------------------------
                                                                                  

consensus_9472#0      GCTCGTTGCTGGAGTGGCCGCTTATAAGGACTGTTATTTTCTACACATTATTTA 591
consensus_9472#1      ------------------------------------------------------