These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2196 fasta sequence [TACCCGCTCTCTATGTCTTTAGTGTTTCCCTGTTTTCATGGGTGTTTCGCGATACCTTTCTGTTGTCGATCCGGAACAGGCTGTGTAATGCGAAAATGCATACCACCATGTGCAGAAAATTCCAAACGCCGTTACCTTTTTGAGTTTGTCAGCGGATTTTTGATGTCGTATCTTGTTTACGGACCTCTAGTTATTCATATGTTTGTTCAAGCCATACCGGCATACTTGATGATGGTTTTTCTTCCATCATCTGTTGCTCAGTATGGCATTTTAATCTTTTCAATGGCATA-TTTATCTTCAGTACATATTCATAGATGTATGTATAATCCCCGGCTCGATATCTCTGCGGCTTTGATGGTGCAAACTCAAAAGCTATCTTCTTTGGCTTTTAACATCGGTGATGGAGTAAAGTTGTCAAAAAAAGGAACAGTTGACCAAGACTATCACAAGCTTCATGCCGTTGAACGTCGACCTCGTCTTCTCCAGCTGGGTGGATACTTATTCTCATTTCATAACGTAATGATTGGTCCCTTCAGTTTTTTTGCTGATTATATGAGATTTATTCAGGGTCAAGAATCAGAACAGCTCCTCAATGAAACTGATAAAAAGCGATTTGAGGATAACAAGGAGGCGATACTTTCCGCTAAAGCAGAGAAATGGAAACAGATGAAACTTCTACTACTTCATGGTATATTACTCTTATGGTCCTTTAATAGTTTTAAACCAGAGGCATTTTTGTCCGAAGATTTTGC-AAAAAAGAATTACTTTCAAAAATTTATCTACTTATCAATCGCTTGTTTTGGTTTTCGTCAAAAGTTTTATTTTGCTTGGACTCTTAGTTGTCTATCAAATTTAGTCGCAGGTTTTGGATTTTCTGGATTTAATAATAAAGGCGAACCGGAATATCGTCTGGCTACTAATATTTACTTTTTGCCTATTGAACTTGGTACAAGTACAAAAGCAATCATAGATTCTTGGAATACAGCGACAACACGTTGGTTACGTGAATGTATATACGATCGTGTACCAAAACGTTATGCTGTTTGGGCAGTTTTCGCTGCATCAGCTATGTGGCATGGTTTCTATCCAGGTTATTATCTAGCTTTTGTATCTGCAGCTCT-AT-ACAGTGGCAGGAAGAGTTTGTCGAAAATATCTTCGACCGAATTTTCTTCGTTCATCCGGA-TACATTGCTTCTATTATGTGCTAACTAATATAAGCGCTATGTTATGCTTAAATTATTTGGGTGTATCGTTTCTTCTTTTGACTACTGATAAAGTATTGCATTTTTGGAGACAAATGCGCTTTATTGGACATATTGGACCATTGGCTTTAATTATTGGTCTTCCTTTATTATGTAGTAAACCAGGGGAAATATAAGAATATACTACTGATTAAATATGACATTTTATTTTTTAAAAATGAAAAAAATTTTTTTAATGAGTATTTGTCATTTATTATTCACAAATTTACTCGTTACTATTAGAGGTAAAGAAAAGGGTCAATAAAGCTGATGAATCATATTTCCTTTCCTTACTGTTCTTCTTATTATTCCATGTTTATGAAGAACAAATGCAGGTTTTTGTTTGAATATTTGCTTATCTATTATTTTTATTGATTGCTTAAAGCAATTCTGTTTCAATCTCAACATATCTGTTGTTTATTGGTAATGATATTAACACTATCTTCACTATTACTTATTATTAACAATAAGCATATGATCCCCTCCCCC-ACATACGAACCCTATACACGCTCGTTNTATCAACCGATATTACTTCACACATCATATTACANTTATCATTCTTATTAGTAGTAATATTAATGGGGTTACCATTATTACCACCAGCCTCTCCCCCTCAAATACTCAGCGTTTTACAACTGACCTCAAAACTATGTCTGTTTGTTTGGTTTTACTTATTTTTTTCATCCTCTATTATCCAAAAAATGTATGTTTACTATTTTGTTATTATTTATCTGTTTAAGTTGTGGAAAAAGTGTGTGTTTCTGTGTAAAATTTATCCGCCGATATTCATGTGAAAGCAACATTTATGTACTATTTTGTTTTGTTTTTTTCATGGTAACACTATACTATTTGTTTATAAAACTGGCATTTGATAAAAGACAAGGGAGTATATATGTGTTTTATAATCATTATTATTATTATTAATATTGTTCATATGTCAATAAATAAAAAAAGAT] [+] EMBL CD185349 [TACCCGCTCTCTATGTCTTTAGTGTTTCCCTGTTTTCATGGGTGTTTCGCGATACCTTTCTGTTGTCGATCCGGAACAGGCTGTGTAATGCGAAAATGCATACCACCATGTGCAGAAAATTCCAAACGCCGTTACCTTTTTGAGTTTGTCAGCGGATTTTTGATGTCGTATCTTGTTTACGGACCTCTAGTTATTCATATGTTTGTTCAAGCCATACCGGCATACTTGATGATGGTTTTTCTTCCATCATCTGTTGCTCAGTATGGCATTTTAATCTTTTCAATGGCATA TTTATCTTCAGTACATATTCATAGATGTATGTATAATCCCCGGCTCGATATCTCTGCGGCTTTGATGGTGCAAACTCAAAAGCTATCTTCTTTGGCTTTTAACATCGGTGATGGAG ] [+] EMBL CD185605 [TACCCGCTCTCTATGTCTTTAGTGTTTCCCTGTTTTCATGGGTGTTTCGCGATACCTTTCTGTTGTCGATCCGGAACAGGCTGTGTAATGCGAAAATGCATACCACCATGTGCAGAAAATTCCAAACGCCGTCACCTTTTTGAGTTTGTCAGCGGATTTTTGATGTCGTATCTTGTTTACGGACCTCTAGTTATTCATATGTTTGTTCAAGCCATACCGGCATACTTGATGATGGTTTTTCTTCCATCATCTGTTGCTCAGTATGGCATTTTAATCTTTTCAATGGCATA TTTATCTTCAGTACATATTCATAGATGTATGTATAATCCCCGGCTCGATATCTCTGCGGCTTTGATGGTGTAAACTCAAAAGCTATCTTCTTTGGCTTTTAACATCGGTGATGGAG ] [+] EMBL CD127981 [ AAAGACATAGTAGGTCTTCAGTACATATTTTTAGATGTATGTATAATCCCCGGCTCGATATCTCTGCGGCTTTGATGGTGCAAACTCAAAAGCTATCTTCTTTGGCTTTTAACATCGGTGATGGAGTAAAGTTGTCAAAAAAAGGAACAGTTGACCAAGACTATCACAAGCTTCATGCCGTTGAACGTCGACCTCGTCTTCTCCAGCTGGGTGGATACTTATTCTCATTTCATAACGTAATGATTGGTCCCTTCAGTTTTTTTGCTGATTATATGAGATTTATTCAGGGTCAAGAATCAGAACAGCTCCTCAATGAAACTGATAAAAAGCGATTTGAGGATAACAAGGAGGCGATACTTTCCGCTAAAGCAGAGAAATGGAAACAGATGAAACTTCTACTACTTCATGGTATATTACTCTTATGGTCCTTTAATAGTTTTAAACCAGAGGCATTTTTGTCCGAAGATTTTGC AAAAAAGAATTACTT ] [-] EMBL CD155077 [ ATACTTTCCGCTAAAGCAGAAAAATGGAAACAGATGAAACTTCTACTACTTCATGGTATATTACTCTTATGGTCCTTTAATAGTTTTAAACCAGAGGCATTTTTGTCCGAAGATTTTGC AAAAAAGAATTACTTTCAAAAATTTATCTACTTATCAATCGCTTGTTTTGGTTTTCGTCAAAAGTTTTATTTTGCTTGGACTCTTAGTTGTCTATCAAATTTAGTCGCAGGTTTTGGATTTTCTGGATTTAATAATAAAGGCGAACCGGAATATCGTCTGGCTACTAATATTTACTTTTTGCCTATTGAACTTGGTACAAGTACAAAAGCAA ] [-] EMBL CD201802 [ AAACAGATGAAACTTCTACTACTTCATGGTATATTACTCTTATGGTCCTTTAATAGTTTTAAACCAGAGGCATTTTTGTCCGAAGATTTTGCAAAAAAAGAATTACTTTCAAAAATTTATCTACTTATCAATCGCTTGTTTTGGTTTTCGTCAAAAGTTTTATTTTGCTTGGACTCTTAGTTGTCTATCAAATTTAGTCGCAGGTTTTGGATTTTCTGGATTTAATAATAAAGGCGAACCGGAATATCGTCTGGCTACTAATATTTACTTTTTGCCTATTGAACTTGGTACAAGTACAAAAGCAATCATAGATTCTTGGAATACAGCGACAACACGTTGGTTACGTGAATGTATATACGATCGTGTACCAAAACGTTATGCTGTTTGGGCAGTTTTCG ] [+] EMBL CD178171 [ AATCATAGATTCTTGGAATACAGCGACAACACGTTGGTTACGTGAATGTATATACGATCGTGTACCAAAACGTTATGCTGTTTGGGCAGTTTTCGCTGCATCAGCTATGTGGCATGGTTTCTATCCAGGTTATTATCTAGCTTTTGTATCTGCAGCTCTAATCACAGTGGCAGGAAGAGTTTGTCGAAAATATCTTCGACCGAATTTTCTTCGTTCATCCGGATTACATTGCTTCTATTATGTGCTAACTAATATA ] [+] EMBL CD079931 [ CTCT AT ACAGTGGCAGGAAGAGTTTGTCGAAAATATCTTCGACCGTATTTTCTTCGTTCATCCGGA TACATTGTTTCTATAATGTACTAACTAATATAAGCGCTATGTTATGCTTAAATTATTTGGGTGTATCGTTTCTTCTTTTGACTACTGATAAAGTATTGCATTTTTGGAGACAAATGCGCTTTATTGGACATATTGGACCATTGGCTTTAATTATTGGTCTTCCTTTATTATGTAGTAAACCAGGGGAAATATAAGAATATACTACTGATTAAATATGACATTTTATTTTTTAAAAATGAAAAAAATTTTTTTAATGAGTATTTGTCATTTATTATTCACAAATTTACTCGTTACTATTAGAGGTAAAGAAAAGGGTCAATAAAGCTGATGAATCATATTTCCTTTCCTTACTGTTCTTCTTATTATTCCATGTTTATGAAGAACAAATGCAGGTTTTTGTTTGAATATTTGCTTATCTATTATTTTTATTGATTGCTTAAAGCAATTCTGTTTCAATCTCAACATATCTGTTGTTTATTGGTAATGATATTAACACTATCTTCACTATTACTTATTATTAACAATAAGCATATGATCCCCTCCCCC ACATACGAACCCTATACACGCTCGTTNTATCAACCGATATTACTTCACACATCATATTACANTTATCATTCTTATTAGTAGTAATAT ] [-] EMBL CD074128 [ GAACAAATGCAGGTTTTTGTTTGAATATTTGCTTATCTATTATTTTTATTGATGNCTTAAAGCAATTCTGTTTCAATCTCAACATATCTGTTGTTTATTGGTAATGATATTAACACTATCTTCACTATTACTTATTATTAACAATAAGCATATGATCCCCTCCCCCAACATACGAACCCTATACACGCTCGTTTTATCAACCGATATTACTTCACACATCATATTACATTTATCATTCTTATTAGTAGTAATATTAATGGGGTTACCATTATTACCACCAGCCTCTCCCCCTCAAATACTCAGCGTTTTACAACTGACCTCAAAACTATGTCTGTTTGTTTGGTTTTACTTATTTTTTTCATCCTCTATTATCCAAAAAATGTATGTTTACTATTTTGTTATTATTTATCTGTTTAAGTTGTGGAAAAAGTGTGTGTTTCTGTGTAAAATTTATCCGCCGATATTCATGTGAAAGCAACATTTATGTACTATTTTGTTTTGTTTTTTTCATGGTAACACTATACTATTTGTTTATAAAACTGGCATTTGATAAAAGACAAGGGAGTATATATGTGTTTTATAATCATTATTATTATTATTAATATTGTTCATATGTCAATAAATAAAAAAAGAT] consensusID : consensus_9473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [ACCCGCTCTCTATGTCTTTAGTGTTTCCCTGTTTTCATGGGTGTTTCGCGATACCTTTCTGTTGTCGATCCGGAACAGTGGGCATTCTTGATATGTCAACTTTTCACGCTACTTGCAGGCTGTGTAATGCGAAAATGCATACCACCATGTGCAGAAAATTCCAAACGCCGTCACCTTTTTGAGTTTGTCAGCGGATTTTTGATGTCGTATCTTGTTTACGGACCTCTAGTTATTCATATGTTTGTTCAAGCCATACCGGCATACTTGATGATGGTTTTTCTTCCATCATCTGTTGCTCAGTATGGCATTTTAATCTTTTCAATGGCATATTTATCTTCAGTACATATTCATAGATGTATGTATAATCCCCGGCTCGATATCTCTGCGGCTTTGATGGTGCAAACTCAAAAGCTGTCTTCTTTGGCTTTTAACATCGGTGATGGAGTAAAGTTGTCAAAAAAATGGCGGCCTGC] [+] EMBL CD185156 [ACCCGCTCTCTATGTCTTTAGTGTTTCCCTGTTTTCATGGGTGTTTCGCGATACCTTTCTGTTGTCGATCCGGAACAGTGGGCATTCTTGATATGTCAACTTTTCACGCTACTTGCAGGCTGTGTAATGCGAAAATGCATACCACCATGTGCAGAAAATTCCAAACGCCGTCACCTTTTTGAGTTTGTCAGCGGATTTTTGATGTCGTATCTTGTTTACGGACCTCTAGTTATTCATATGTTTGTTCAAGCCATACCGGCATACTTGATGATGGTTTTTCTTCCATCATCTGTTGCTCAGTATGGCATTTTAATCTTTTCAATGGCATATTTATCTTCAGTACATATTCATAGATGTATGTATAATCCCCGGCTCGATATCTCTGCGGCTTTGATGGTGCAAACTCAAAAGCTGTCTTCTTTGGCTTTTAACATCGGTGATGGAGTAAAGTTGTCAAAAAAATGGCGGCCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9473#0 TACCCGCTCTCTATGTCTTTAGTGTTTCCCTGTTTTCATGGGTGTTTCGCGATACCTTTC 60 consensus_9473#1 -ACCCGCTCTCTATGTCTTTAGTGTTTCCCTGTTTTCATGGGTGTTTCGCGATACCTTTC 59 *********************************************************** consensus_9473#0 TGTTGTCGATCCGGAACAG----------------------------------------G 80 consensus_9473#1 TGTTGTCGATCCGGAACAGTGGGCATTCTTGATATGTCAACTTTTCACGCTACTTGCAGG 119 ******************* * consensus_9473#0 CTGTGTAATGCGAAAATGCATACCACCATGTGCAGAAAATTCCAAACGCCGTTACCTTTT 140 consensus_9473#1 CTGTGTAATGCGAAAATGCATACCACCATGTGCAGAAAATTCCAAACGCCGTCACCTTTT 179 **************************************************** ******* consensus_9473#0 TGAGTTTGTCAGCGGATTTTTGATGTCGTATCTTGTTTACGGACCTCTAGTTATTCATAT 200 consensus_9473#1 TGAGTTTGTCAGCGGATTTTTGATGTCGTATCTTGTTTACGGACCTCTAGTTATTCATAT 239 ************************************************************ consensus_9473#0 GTTTGTTCAAGCCATACCGGCATACTTGATGATGGTTTTTCTTCCATCATCTGTTGCTCA 260 consensus_9473#1 GTTTGTTCAAGCCATACCGGCATACTTGATGATGGTTTTTCTTCCATCATCTGTTGCTCA 299 ************************************************************ consensus_9473#0 GTATGGCATTTTAATCTTTTCAATGGCATATTTATCTTCAGTACATATTCATAGATGTAT 320 consensus_9473#1 GTATGGCATTTTAATCTTTTCAATGGCATATTTATCTTCAGTACATATTCATAGATGTAT 359 ************************************************************ consensus_9473#0 GTATAATCCCCGGCTCGATATCTCTGCGGCTTTGATGGTGCAAACTCAAAAGCTATCTTC 380 consensus_9473#1 GTATAATCCCCGGCTCGATATCTCTGCGGCTTTGATGGTGCAAACTCAAAAGCTGTCTTC 419 ****************************************************** ***** consensus_9473#0 TTTGGCTTTTAACATCGGTGATGGAGTAAAGTTGTCAAAAAAAGGAACAGTTGACCAAGA 440 consensus_9473#1 TTTGGCTTTTAACATCGGTGATGGAGTAAAGTTGTCAAAAAAATGG-CGGCCTGC----- 473 ******************************************* * * * * consensus_9473#0 CTATCACAAGCTTCATGCCGTTGAACGTCGACCTCGTCTTCTCCAGCTGGGTGGATACTT 500 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 ATTCTCATTTCATAACGTAATGATTGGTCCCTTCAGTTTTTTTGCTGATTATATGAGATT 560 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TATTCAGGGTCAAGAATCAGAACAGCTCCTCAATGAAACTGATAAAAAGCGATTTGAGGA 620 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TAACAAGGAGGCGATACTTTCCGCTAAAGCAGAGAAATGGAAACAGATGAAACTTCTACT 680 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 ACTTCATGGTATATTACTCTTATGGTCCTTTAATAGTTTTAAACCAGAGGCATTTTTGTC 740 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 CGAAGATTTTGCAAAAAAGAATTACTTTCAAAAATTTATCTACTTATCAATCGCTTGTTT 800 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TGGTTTTCGTCAAAAGTTTTATTTTGCTTGGACTCTTAGTTGTCTATCAAATTTAGTCGC 860 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 AGGTTTTGGATTTTCTGGATTTAATAATAAAGGCGAACCGGAATATCGTCTGGCTACTAA 920 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TATTTACTTTTTGCCTATTGAACTTGGTACAAGTACAAAAGCAATCATAGATTCTTGGAA 980 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TACAGCGACAACACGTTGGTTACGTGAATGTATATACGATCGTGTACCAAAACGTTATGC 1040 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TGTTTGGGCAGTTTTCGCTGCATCAGCTATGTGGCATGGTTTCTATCCAGGTTATTATCT 1100 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 AGCTTTTGTATCTGCAGCTCTATACAGTGGCAGGAAGAGTTTGTCGAAAATATCTTCGAC 1160 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 CGAATTTTCTTCGTTCATCCGGATACATTGCTTCTATTATGTGCTAACTAATATAAGCGC 1220 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TATGTTATGCTTAAATTATTTGGGTGTATCGTTTCTTCTTTTGACTACTGATAAAGTATT 1280 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 GCATTTTTGGAGACAAATGCGCTTTATTGGACATATTGGACCATTGGCTTTAATTATTGG 1340 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TCTTCCTTTATTATGTAGTAAACCAGGGGAAATATAAGAATATACTACTGATTAAATATG 1400 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 ACATTTTATTTTTTAAAAATGAAAAAAATTTTTTTAATGAGTATTTGTCATTTATTATTC 1460 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 ACAAATTTACTCGTTACTATTAGAGGTAAAGAAAAGGGTCAATAAAGCTGATGAATCATA 1520 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TTTCCTTTCCTTACTGTTCTTCTTATTATTCCATGTTTATGAAGAACAAATGCAGGTTTT 1580 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TGTTTGAATATTTGCTTATCTATTATTTTTATTGATTGCTTAAAGCAATTCTGTTTCAAT 1640 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 CTCAACATATCTGTTGTTTATTGGTAATGATATTAACACTATCTTCACTATTACTTATTA 1700 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TTAACAATAAGCATATGATCCCCTCCCCCACATACGAACCCTATACACGCTCGTTNTATC 1760 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 AACCGATATTACTTCACACATCATATTACANTTATCATTCTTATTAGTAGTAATATTAAT 1820 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 GGGGTTACCATTATTACCACCAGCCTCTCCCCCTCAAATACTCAGCGTTTTACAACTGAC 1880 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 CTCAAAACTATGTCTGTTTGTTTGGTTTTACTTATTTTTTTCATCCTCTATTATCCAAAA 1940 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 AATGTATGTTTACTATTTTGTTATTATTTATCTGTTTAAGTTGTGGAAAAAGTGTGTGTT 2000 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TCTGTGTAAAATTTATCCGCCGATATTCATGTGAAAGCAACATTTATGTACTATTTTGTT 2060 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 TTGTTTTTTTCATGGTAACACTATACTATTTGTTTATAAAACTGGCATTTGATAAAAGAC 2120 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 AAGGGAGTATATATGTGTTTTATAATCATTATTATTATTATTAATATTGTTCATATGTCA 2180 consensus_9473#1 ------------------------------------------------------------ consensus_9473#0 ATAAATAAAAAAAGAT 2196 consensus_9473#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||