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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1416 fasta sequence
[GGGTAATTCATACATCAAATACACCTACCTTAAATAGATTAGATGAATTTAAACGAAACTGTGAACGAGCAGCAAGACAATGGGAACAAGTTATTAATAATAAAAATGGCAATAAATTGACAGAAGTAATGGCTCATAGAATAGCTGAATTGGAATCCTGTGTAAAAGAGGCTGAAAATTTATTAAAATTATTTGTAGCAGAAATTCGTGATGTACGTGCAACGGCTGATTATTGGTCGAAGAAAACAACAAATTTAGAAAAATCTTATCATAATCTACATGGAAAAGTTAAAGATTATCGTTTTAATGCTAAACAAAGTGAAAATGATTATTTAAAAGCGATGGAAGAACGTGAATACATTTTACAAAGTCTTCGAGAATCAGAAATAAGAGAGCAAAACTTGTCAAATTTACTTCAACGTGTTGAAGATGAATATAATACTTTGTCAAGAGATATAAGAATTTTAGAACGAGCTCATGCAAAAAAAGATCGTCAATTACAAAATTTATTGTTAGAGAAAAATGAACTTTCACGGAAAATTATACATTTGGAATCAACCTTACATAAATTAAAAAATCGAACAGAATACACATATAGGCAAAAACATTCATCTCATAAAGATGAACCCATAAATCGACTTCATACTCAACTTGGTGATGAATCTGAATATGTACTAAGTGACTTCGGTTCATTAGATCGAAACCAAAAGGTTTACACTATGAGTGCATCAATAGATGAAAGACAGAACAAAAACACTCTAATTGGTATCAATCAAAGTTTAGATGACTCTGATACGTATATACCACAAAAATCGGAAGTATTCAAAGTCAGCGGATCAGTAGAATTATTAGAAGGTAAAAAACAGAACTATTTATCCAACAAAAACATGCCAGACTCTTTAAACAGTGCAAAAATAAGTGAAAATAATATCAATACACAGGGATCAC-AAGGTTCACTTGATGATCAAAATATTGATTTGTCACCAACAACAATTGGTAATGAAGAAATTCATCATCAATCAGAACATTTAATACAGCATCGATCAGTTGAAAAAAGTATGGATGATTTATCGGATACTTTAGTAGATCTAAATAATTCAACTAGACAAGATGATATAGATGTTGAGATACAACCAAGGGATTCAACTAATAATTACCACAGAAAATGGAGTATTGCATCAGATTATCAATATTCTCCTAGTCAACATATAAAGTCATTAAAGAAAGATGCTTTATCTACAGAAGATGAGTCATTAAAACATAGATCTCAAGTACAAGTCGTTGTTGGACGATCACCATCAACGGAAAAAAAAAGAAGAGCAATTCATACCAGTCATTCACATAAAAAGTATACATATAAGAAAATATTTGATNCACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGAT]
[+] EMBL CD064556 [GGGTAATTCATACATCAAATACACCTACCTTAAATAGATTAGATGAATTTAAACGAAACTGTGAACGAGCAGCAAGACAATGGGAACAAGTTATTAATAATAAAAATGGCAATAAATTGACAGAAGTAATGGCTCATAGAATAGCTGAATTGGAATCCTGTGTAAAAGAGGCTGAAAATTTATTAAAATTATTTGTAGCAGAAATTCGTGATGTACGTGCAACGGCTGATTATTGGTCGAAGAAAACAACAAATTTAGAAAAATCTTATCATAATCTACATGGAAAAGTTAAAGATTATCGTTTTAATGCTAAACAAAGTGAAAATGATTATTTAAAAGCGATGGAAGAACGTGAATACATTTTACAAAGTCTTCGAGAATCAGAAATAAGAGAGCAAAACTTGTCAAATTTACTTCAACGTGTTGAAGATGAATATAATACTTTGTCAAGAGATATAAGAATTTTAGAACGAGCTCATGCAAAAAAAGATCGTCAATTACAAAATTTATTGTTAGAGAAAA ]
[+] EMBL BF936776 [ TTAAAAGCGATGGAAGAACGTGAATACATTTTACAAAGTCTTCGAGAATCAGAAATAAGAGAGCAAAACTTGTCAAATTTACTTCAACGTGTTGAAGATGAATATAATACTTTGTCAAGAGATATAAGAATTTTAGAACGAGCTCATGCAAAAAAAGATCGTCAATTACAAAATTTATTGTTAGAGAAAAATGAACTTTCACGGAAAATTATACATTTGGAATCAACCTTACATAAATTAAAAAATCGAACAGAATACACATATAGGCAAAAACATTCATCTCATAAAGATGAACCCATAAATCGACTTCATACTCAACTTGGTGATGAATCTGAATATGTACTAAGTGACTTCGGTTCATTAGATCGAAACCAAAAGGTTTACACTATGAGTGCATCAATAGATGAAAGACAGAACAAAAACACTCTAATTGGTATCAATCAAAGTTTAGATGACTCTGATACGTATATACCACAAAAATCGGAAGTATTCAAAGTCAGCGGATCAGTAGAATTATTAGAAGGTAAAAAACAGAACTATTTATCCAACAAAAACATGCCAGACTCTTTAAACAGTGCAAAAATAAGTGAAAATAATATCAATACACAGGGATCAC AAGGTTCACTTGATGATCAAAATATTGATTTGTCAC ]
[+] EMBL CD148696 [ CATAAAGATGAACCCATAAATCGACTTCATACTCAACTTGGTGATGAATCTGAATACGTACTAAGTGACTTCGGTTCATTAGACCGAAACCAAAAGGTTTACACTATGAGTGCATCAATAGATGAAAGACAGAACAAAAACACTCTAATTGGTATCAATCAAAGTTTAGATGACTCTGATACGTATATACCACAAAAATCGGAAGTATTCAAAGTCAGCGGATCAGTAGAATTATTAGAAGGTAAAAAACAGAACTATTTATCCAACAAAAACATGCCAGACTCTTTAACAAGTGCAAAAATAAGTGAAAATAATATCAATACACA GGATCACAAAGGTTCACTTGATGATCAAAATATTGATTTGTCACCAACAACAATTGGTAATGAAGAAATTCATCATCAATCAGAACATTTAATACAGCATCGATCAGTTGAAAAAAGTATGGATGATTTATCGGATACTTTAGTAGATCTAAATAATTCAACTAGACAAGATGATATAGATGTTGAGATACAACCAAGGGATTCAACTAATAATTACCACAGAAAATGGAGTATTGCATCAGATTA ]
[+] EMBL CD142660 [ TGAAAAAAGTATGGATGATTTATCGGATACTTTAGTAGATCTAAATAATTCAACTAGACAAGATGATATAGATGTTGAGATACAACCAAGGGATTCAACTAATAATTACCACAGAAAATGGAGTATTGCATCAGATTATCAATATTCTCCTAGTCAACATATAAAGTCATTAAAGAAAGATGCTTTATCTACAGAAGATGAGTCATTAAAACATAGATCTCAAGTACAAGTCGTTGTTGGACGATCACCATCAACGGAAAAAAAAAGAAGAGCAATTCATACCAGTCATTCACATAAAAAGTATACATATAAGAAAATATTTGATNCACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGAT]
consensusID : consensus_9478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 871 fasta sequence
[AATTCGGCACGACGGAANAAGAGCAATTGATACCAGTCATTCACATAAAAAGTATACATATAAGAAAATATTTGATCAACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGATTTAATAGACATCGTCCAGCATCAGTCTCTGGTTATTTGGATGAATGCGCATTAAACAGATCATATGATTTATACCCTGTACCAACTTCAGCTAGACCAAGTACCAGTTTTGGACATTTACATAATTCTAAACGTTTAAAATCACTGGAAAGAGATTATTATACATCTTGTCAAAATTTAAGTACAAAACCTTACTCCACTGTGAAATTGAATCGTCAACTAAATCGACAACCTCATATTATTCACGCACATTCAGATCGTCGTCTAAGAGATATGCAACATACAAATTATTTACGTCATGGCAATCGTATGGATAACGAATATGAGCGAATTTATTTTCCTCAATCATATTCATCACATCATTTAAAAATTCCGGAAAAAACATGTTTGGAAAGTAGTCTAGATCATATCAATCTTGAAGTGGATCGTTTACGAGATTGTATCAAATTATTAAATCCATAAATATTAGTGTGTTGTGATGATTTAAACCAAAATTTAAACAAAAATAAAACATATATGGACAGCTTTCCTTTTTCTTTTTGTTCTTTTTTACATATACCATACATTCAAATATATTAGCTTAATTAATTGAACTGAACAAATTTTGTTAGAATGAATAAATAACTACTTATCACAAATATTAGTTGATCAAAGCTGAATATTTCAAATCATGGATTGAATATATTACTACTTATAAACATCTTTAAAGAAAACCACTACTGACCCAAAAATTATCCCAATACACATATCAAT]
[+] EMBL CD081702 [AATTCGGCACGACGGAANAAGAGCAATTGATACCAGTCATTCACATAAAAAGTATACATATAAGAAAATATTTGATCAACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGATTTAATAGACATCGTCCAGCATCAGTCTCTGGTTATTTGGATGAATGCGCATTAAACAGATCATATGATTTATACCCTGTACCAACTTCAGCTAGACCAAGTACCAGTTTTGGACATTTACATAATTCTAAACGTTTAAAATCACTGGAAAGAGATTATTATACATCTTGTCAAAATTTAAGTACAAAACCTTACTCCACTGTGAAATTGAATCGTCAACTAAATCGACAACCTCATATTATTCACGCACATTCAGATCGTCGTCTAAGAGATATGCAACATACAAATTATTTACGTCATGGCAATCGTATGGATAACGAATATGAGCGAATTTATTTTCCTCAATCATATTCATCACATCATTTAAAAATTCCGGAAAAAACATGTTTGGAAAGTAGTCTAGATCATATCAATCTTGAAGTGGATCGTTTACGAGATTGTATCAAATTATTAAATCCATAAATATTAGTGTGTTGTGATGATTTAAACCAAAATTTAAACAAAAATAAAACATATATGGACAGCTTTCCTTTTTCTTTTTGTTCTTTTTTACATATACCATACATTCAAATATATTAGCTTAATTAATTGAACTGAACAAATTTTGTTAGAATGAATAAATAACTACTTATCACAAATATTAGTTGATCAAAGCTGAATATTTCAAATCATGGATTGAATATATTACTACTTATAAACATCTTTAAAGAAAACCACTACTGACCCAAAAATTATCCCAATACACATATCAAT]
[+] EMBL CD166726 [ CATTCACAT AAAAGTATACATATAAGAAAATATTTGATCAACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGATTTAATAGACATCGTCCAGCATCAGTCTCTGGTTATTTGGATGAATGCGCATTAAACAGATCATATGATTTATACCCTGTACCAACTTCAGCTAGACCAAGTACCAGTTTTGGACATTTACATAATTCTAAACGTTTAAAATCACTGGAAAGAGATTATTATACATCTTGTCAAAATTTAAGTACAAAACCTTACTCC ]
[+] EMBL AI976708 [ TTACATAATTCTAAACGTTTAAAATGACTGGAAAGAGATTATTATACATCTTGACAAAATTTAAGTACAAAACCTTACTTCACTGTGAAATTGAATCGTCAACTAAATCTACAACCTCATATTATTCACGCACATTCAGATCGTCGTCTAAGAGATATGCAACATACAAATTATTTACGTCATGGCAATCGTATGGATAACGAATATGAGCGAATTTATTTTCCTCAATCATATTCATCACATCATTTA ]
[+] EMBL SM9291 [ AATATATTAGCTTAATTAATTGAACTGAACAAATTTTGTTAGAATGAATAAATAACTACTTATCACAAATATTAGTTGATCAAAGCTGAATATTTCAAATCATGGATTGAATAT ]
consensusID : consensus_9478#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence
[CACGGACGCATCACATAAAAAGTATACATATATAGAAAATATTGATCAACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGATTTAATAGACATCGTCCAGCATCAGTCTCTGGTTATTTGGATGAATGCGCATTAAACAGATCATATGATTTATACCCTGTACCAACTTCAGCTAGACCAAGTACCAGTTTTGGACATTTACATAATTCTAAACGTTTAAAATCACTGGAAAGAGATTATTATACATCTTGTCAAAATTTAAGTACAAAACCTTACTCC]
[+] EMBL CD166722 [CACGGACGCATCACATAAAAAGTATACATATATAGAAAATATTGATCAACCTGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGATTTAATAGACATCGTCCAGCATCAGTCTCTGGTTATTTGGATGAATGCGCATTAAACAGATCATATGATTTATACCCTGTACCAACTTCAGCTAGACCAAGTACCAGTTTTGGACATTTACATAATTCTAAACGTTTAAAATCACTGGAAAGAGATTATTATACATCTTGTCAAAATTTAAGTACAAAACCTTACTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9478#1 ------------------------------------------------------AATTCG 6
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 GGGTAATTCATACATCAAATACACCTACCTTAAATAGATTAGATGAATTTAAACGAAACT 60
consensus_9478#1 GCACGACGGAANAAGAGCAATTGATACCAGTCATTCACATAAAAAGTATACATATA-AGA 65
consensus_9478#2 ------------------------CACGGACGCATCACATAAAAAGTATACATATATAGA 36
consensus_9478#0 GTGAACGAGCAGCAAGACAATGGGAACAAGTTATTAATAATAAAAATGGCAATAAATTGA 120
** * * * **** * *** * **
consensus_9478#1 ---AAATATTTGATCAACCTGTATTGCCATCCGTATTCAGTACCAAC-AGCCTCCGATTT 121
consensus_9478#2 ---AAATATT-GATCAACCTGTATTGCCATCCGTATTCAGTACCAAC-AGCCTCCGATTT 91
consensus_9478#0 CAGAAGTAATGGCTCATAGAATAGCTGAATTGGAATCCTGTGTAAAAGAGGCTGAAAATT 180
** ** * * *** ** ** * ** * ** ** ** ** * **
consensus_9478#1 AATAGACATCGTCC--AGCATCAGTCTCTGGT-TATTTGGA-----TGAATGCGCATTAA 173
consensus_9478#2 AATAGACATCGTCC--AGCATCAGTCTCTGGT-TATTTGGA-----TGAATGCGCATTAA 143
consensus_9478#0 TATTAAAATTATTTGTAGCAGAAATTCGTGATGTACGTGCAACGGCTGATTATTGGTCGA 240
** * ** * **** * * ** * ** ** * *** * * *
consensus_9478#1 ACAGATCATATGATTTATA----CCCTGTACCAACTT---CAGCTAGACCAAGTACCAGT 226
consensus_9478#2 ACAGATCATATGATTTATA----CCCTGTACCAACTT---CAGCTAGACCAAGTACCAGT 196
consensus_9478#0 AGAAAACAACAAATTTAGAAAAATCTTATCATAATCTACATGGAAAAGTTAAAGATTATC 300
* * * ** ***** * * * * ** * * * ** * *
consensus_9478#1 -TTTGGACATTTACATAATTCTAAACG----TTTAAAATCACTGGAAAGAGATTATTATA 281
consensus_9478#2 -TTTGGACATTTACATAATTCTAAACG----TTTAAAATCACTGGAAAGAGATTATTATA 251
consensus_9478#0 GTTTTAATGCTAAACAAAGTGAAAATGATTATTTAAAAGCGATGGAAGAACGTGAATACA 360
*** * * * ** * *** * ******* * ***** * * * ** *
consensus_9478#1 CATC------TTGTCAAAATTTAAGTACAAAACCTTACTCCACTGTGAAATTGAATCGTC 335
consensus_9478#2 CATC------TTGTCAAAATTTAAGTACAAAACCTTACTCC------------------- 286
consensus_9478#0 TTTTACAAAGTCTTCGAGAATCAGAAATAAGAGAGCAAAACTTGTCAAATTTACTTCAAC 420
* * ** * * * * * ** * * *
consensus_9478#1 AACTAAATCGACAACCTCATATTATTCACGCACATTCAGATCGTCGTCTAAGAGAT-ATG 394
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 GTGTTGAAGATGAATATAATACTTTGTCAAGAGATATAAGAATTTTAGAACGAGCTCATG 480
consensus_9478#1 CAACATACAA--ATTATTTACGTCATGGCAATCGTATGGATAACGAATATGAGCGAATTT 452
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 CAAAAAAAGATCGTCAATTACAAAATTTATTGTTAGAGAAAAATGAACTTTCACGGAAAA 540
consensus_9478#1 ATTTTCCTCAATCATATTCATCACATCATTTAAAAATTC---CGGAAAAAACATGTTTGG 509
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 TTATACATTTGGAATCAACCTTACATAAATTAAAAAATCGAACAGAATACACATATAGGC 600
consensus_9478#1 AAAGTAGTCTAGATCATATCAATCTTGAAGTGGATCGTTTACGAGATTGTATCAAATTAT 569
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 AAAAACATTCATCTCATAAAGATGAACCCATAAATCGACTTCATACTCAACTTGGTGATG 660
consensus_9478#1 TAAATCCATAAATATTAGTGTGTTGTGATGATTTAAACCAAAATTTAAACAAAAATAAAA 629
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 AATCTGAATATGTACTAAGTGACTTCGGTTCATTAGATCGAAACCAAAA--GGTTTACAC 718
consensus_9478#1 CATATATGGACAGCTTTCCTTTTTCTTTTTGTTCTTTTTTACATATACCATACATTCAAA 689
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 TATGAGTGCATCAATAGATGAAAGACAGAACAAAAACACTCTAATTGGTATCAATCAAAG 778
consensus_9478#1 TATAT-TAGCTTAATTAATTGAACTGAACAAATTTTGTTAGAATGAATAAATAACTACTT 748
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 TTTAGATGACTCTGATACGTATATACCACAAAAATCGGAAGTATTCAAAGTCAGCGGATC 838
consensus_9478#1 ATCACAAATATTAGTTGATCAAAGCTGAATATTTCAAATCATGGATTGAATATATTACTA 808
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 AGTAGAATTATTAGAAGGTAAAAAACAGAACTATTTATCCAACAAAAACATGCCAGACTC 898
consensus_9478#1 CTTATAAA---CATCTTTAAAGAAAACCACTACTGACCCA-AAAATTATCCCAATACACA 864
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 TTTAAACAGTGCAAAAATAAGTGAAAATAATATCAATACACAGGGATCACAAGGTTCACT 958
consensus_9478#1 TATCAAT----------------------------------------------------- 871
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 TGATGATCAAAATATTGATTTGTCACCAACAACAATTGGTAATGAAGAAATTCATCATCA 1018
consensus_9478#1 ------------------------------------------------------------
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 ATCAGAACATTTAATACAGCATCGATCAGTTGAAAAAAGTATGGATGATTTATCGGATAC 1078
consensus_9478#1 ------------------------------------------------------------
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 TTTAGTAGATCTAAATAATTCAACTAGACAAGATGATATAGATGTTGAGATACAACCAAG 1138
consensus_9478#1 ------------------------------------------------------------
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 GGATTCAACTAATAATTACCACAGAAAATGGAGTATTGCATCAGATTATCAATATTCTCC 1198
consensus_9478#1 ------------------------------------------------------------
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 TAGTCAACATATAAAGTCATTAAAGAAAGATGCTTTATCTACAGAAGATGAGTCATTAAA 1258
consensus_9478#1 ------------------------------------------------------------
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 ACATAGATCTCAAGTACAAGTCGTTGTTGGACGATCACCATCAACGGAAAAAAAAAGAAG 1318
consensus_9478#1 ------------------------------------------------------------
consensus_9478#2 ------------------------------------------------------------
consensus_9478#0 AGCAATTCATACCAGTCATTCACATAAAAAGTATACATATAAGAAAATATTTGATNCACC 1378
consensus_9478#1 --------------------------------------
consensus_9478#2 --------------------------------------
consensus_9478#0 TGTATTGCCATCCGTATTCAGTACCAACAGCCTCCGAT 1416
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||