cluster # 948

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Schistosoma mansoni
cluster # 948 cluster # 948 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_948#0 length = 892 sequences # 1

consensus_948#1 length = 531 sequences # 1

consensusID : consensus_948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 892
fasta sequence

                              [CTATTTCAGTTTTCCTTCACTGACGACAGTATTACTAATAATCATAAGATTCTGTATCGCGCAATATTGTCCGAATGGATCCTTGAAATAACACTTTTTGGAAAAAAAGTTAACTTATTCAAGAAGATTCGTACATCTGTTTATGTGTAATATCAGTTGGTAGTGGAAAATATGAAAAAAAATAATTCGCCTTATTTAAAACTTATCAACTGAACTTGCCCATATCCTGGTGTTTATTCTACCAAGCAAGCAACTGATTTACGAGTTTGACGTAAACCAGGATTATTGAATCTTGAAACCGATTTCAAGGCGGCTTTATCCAGAGATTGGTTCTAATTGTTGAATCACAAGAAGCTAGGAGTTATCTAACCAGCTTGTGACGGAAACTATCTCGAAACTGCAATAACCCTTGCAATCAGACAATTGGACGAAACCAGAACGACCAGGTTCAAATGATTTCATTCTACTCAATAAATGATAATCATGACTTCGCAAATATAGTTAACCTAAGCCACACCATTTAATCTAATTAACACAAGCATTCAAGTAATTTGAACTTCCTAAAGTACTTGACCAAACGATTGATAGTAATGATAGATTGAAAAAGAATTTCGGACTTGATTTCCACTATGATCGNTAGAACCAACTACTTCAGAGTCCANAACCATACGAACCAAGTCAAGTAATTATCTNTAAAAATCACTTCAACTAACCAGTCGATCTGTTGAATCATATTGATGAAAACATACANNAAGCTCGGGNTCCATAGAGGANNNAACGAAGAANATACACTAGTACACGAGAAACTGAAATGANACGAGCGTACTTATTTNCACTAGTGTTTTGAGGTCATTTATTNGTACTATATANTGTACCATATTATGCATAGTCA]

[+] EMBL CD082009             [CTATTTCAGTTTTCCTTCACTGACGACAGTATTACTAATAATCATAAGATTCTGTATCGCGCAATATTGTCCGAATGGATCCTTGAAATAACACTTTTTGGAAAAAAAGTTAACTTATTCAAGAAGATTCGTACATCTGTTTATGTGTAATATCAGTTGGTAGTGGAAAATATGAAAAAAAATAATTCGCCTTATTTAAAACTTATCAACTGAACTTGCCCATATCCTGGTGTTTATTCTACCAAGCAAGCAACTGATTTACGAGTTTGACGTAAACCAGGATTATTGAATCTTGAAACCGATTTCAAGGCGGCTTTATCCAGAGATTGGTTCTAATTGTTGAATCACAAGAAGCTAGGAGTTATCTAACCAGCTTGTGACGGAAACTATCTCGAAACTGCAATAACCCTTGCAATCAGACAATTGGACGAAACCAGAACGACCAGGTTCAAATGATTTCATTCTACTCAATAAATGATAATCATGACTTCGCAAATATAGTTAACCTAAGCCACACCATTTAATCTAATTAACACAAGCATTCAAGTAATTTGAACTTCCTAAAGTACTTGACCAAACGATTGATAGTAATGATAGATTGAAAAAGAATTTCGGACTTGATTTCCACTATGATCGNTAGAACCAACTACTTCAGAGTCCANAACCATACGAACCAAGTCAAGTAATTATCTNTAAAAATCACTTCAACTAACCAGTCGATCTGTTGAATCATATTGATGAAAACATACANNAAGCTCGGGNTCCATAGAGGANNNAACGAAGAANATACACTAGTACACGAGAAACTGAAATGANACGAGCGTACTTATTTNCACTAGTGTTTTGAGGTCATTTATTNGTACTATATANTGTACCATATTATGCATAGTCA]




>consensus_948#0
CTATTTCAGTTTTCCTTCACTGACGACAGTATTACTAATAATCATAAGATTCTGTATCGC
GCAATATTGTCCGAATGGATCCTTGAAATAACACTTTTTGGAAAAAAAGTTAACTTATTC
AAGAAGATTCGTACATCTGTTTATGTGTAATATCAGTTGGTAGTGGAAAATATGAAAAAA
AATAATTCGCCTTATTTAAAACTTATCAACTGAACTTGCCCATATCCTGGTGTTTATTCT
ACCAAGCAAGCAACTGATTTACGAGTTTGACGTAAACCAGGATTATTGAATCTTGAAACC
GATTTCAAGGCGGCTTTATCCAGAGATTGGTTCTAATTGTTGAATCACAAGAAGCTAGGA
GTTATCTAACCAGCTTGTGACGGAAACTATCTCGAAACTGCAATAACCCTTGCAATCAGA
CAATTGGACGAAACCAGAACGACCAGGTTCAAATGATTTCATTCTACTCAATAAATGATA
ATCATGACTTCGCAAATATAGTTAACCTAAGCCACACCATTTAATCTAATTAACACAAGC
ATTCAAGTAATTTGAACTTCCTAAAGTACTTGACCAAACGATTGATAGTAATGATAGATT
GAAAAAGAATTTCGGACTTGATTTCCACTATGATCGNTAGAACCAACTACTTCAGAGTCC
ANAACCATACGAACCAAGTCAAGTAATTATCTNTAAAAATCACTTCAACTAACCAGTCGA
TCTGTTGAATCATATTGATGAAAACATACANNAAGCTCGGGNTCCATAGAGGANNNAACG
AAGAANATACACTAGTACACGAGAAACTGAAATGANACGAGCGTACTTATTTNCACTAGT
GTTTTGAGGTCATTTATTNGTACTATATANTGTACCATATTATGCATAGTCA

consensusID : consensus_948#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [TCTCGAAACTGCAATAACCCTTGCAATCAGACAATTGGACGAAACCAGAACGACCAGGTTCAAATGATTTCATTCTACTCAATAAATGATAATCATGACTTCGCAAATATAGTTAACCTAAGCCCCCCCATTTAATTTAATTAACCCAAGCATTCAAGTAATTTGAACTTCCTAAAGTACTTGACCAAACGATTGATAGTAATGATAGATTGAAAAAGAATTTCGGACTTGATTTCCCCTATGATCGTAAGAACCAACTACTTCAGAGTCCAAAACCATACGAACCAAGTCAAGTAATTATCTTTAAAAATCACTTCAACTAACCAGTCGATCTGTTGAATCATATTGATGAAACATAACAAAAAGCTCGGGTCCATAAGAGGAAAAAACGAAAGAAAAATAACCCTAGTAACCCGAGAAAACTGAAAATGAAAACGATGCGTCACTATATTTTCCACTAAGTGTTTTTGAGGTCATTTTATTTGTTAACTAATATCAGTGTACCCAATATTTATTGCAATAGGTCATTAT]

[-] EMBL CD075624             [TCTCGAAACTGCAATAACCCTTGCAATCAGACAATTGGACGAAACCAGAACGACCAGGTTCAAATGATTTCATTCTACTCAATAAATGATAATCATGACTTCGCAAATATAGTTAACCTAAGCCCCCCCATTTAATTTAATTAACCCAAGCATTCAAGTAATTTGAACTTCCTAAAGTACTTGACCAAACGATTGATAGTAATGATAGATTGAAAAAGAATTTCGGACTTGATTTCCCCTATGATCGTAAGAACCAACTACTTCAGAGTCCAAAACCATACGAACCAAGTCAAGTAATTATCTTTAAAAATCACTTCAACTAACCAGTCGATCTGTTGAATCATATTGATGAAACATAACAAAAAGCTCGGGTCCATAAGAGGAAAAAACGAAAGAAAAATAACCCTAGTAACCCGAGAAAACTGAAAATGAAAACGATGCGTCACTATATTTTCCACTAAGTGTTTTTGAGGTCATTTTATTTGTTAACTAATATCAGTGTACCCAATATTTATTGCAATAGGTCATTAT]




>consensus_948#1
TCTCGAAACTGCAATAACCCTTGCAATCAGACAATTGGACGAAACCAGAACGACCAGGTT
CAAATGATTTCATTCTACTCAATAAATGATAATCATGACTTCGCAAATATAGTTAACCTA
AGCCCCCCCATTTAATTTAATTAACCCAAGCATTCAAGTAATTTGAACTTCCTAAAGTAC
TTGACCAAACGATTGATAGTAATGATAGATTGAAAAAGAATTTCGGACTTGATTTCCCCT
ATGATCGTAAGAACCAACTACTTCAGAGTCCAAAACCATACGAACCAAGTCAAGTAATTA
TCTTTAAAAATCACTTCAACTAACCAGTCGATCTGTTGAATCATATTGATGAAACATAAC
AAAAAGCTCGGGTCCATAAGAGGAAAAAACGAAAGAAAAATAACCCTAGTAACCCGAGAA
AACTGAAAATGAAAACGATGCGTCACTATATTTTCCACTAAGTGTTTTTGAGGTCATTTT
ATTTGTTAACTAATATCAGTGTACCCAATATTTATTGCAATAGGTCATTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_948#0      CTATTTCAGTTTTCCTTCACTGACGACAGTATTACTAATAATCATAAGATTCTGTATCGC 60
consensus_948#1      ------------------------------------------------------------
                                                                                 

consensus_948#0      GCAATATTGTCCGAATGGATCCTTGAAATAACACTTTTTGGAAAAAAAGTTAACTTATTC 120
consensus_948#1      ------------------------------------------------------------
                                                                                 

consensus_948#0      AAGAAGATTCGTACATCTGTTTATGTGTAATATCAGTTGGTAGTGGAAAATATGAAAAAA 180
consensus_948#1      ------------------------------------------------------------
                                                                                 

consensus_948#0      AATAATTCGCCTTATTTAAAACTTATCAACTGAACTTGCCCATATCCTGGTGTTTATTCT 240
consensus_948#1      ------------------------------------------------------------
                                                                                 

consensus_948#0      ACCAAGCAAGCAACTGATTTACGAGTTTGACGTAAACCAGGATTATTGAATCTTGAAACC 300
consensus_948#1      ------------------------------------------------------------
                                                                                 

consensus_948#0      GATTTCAAGGCGGCTTTATCCAGAGATTGGTTCTAATTGTTGAATCACAAGAAGCTAGGA 360
consensus_948#1      ------------------------------------------------------------
                                                                                 

consensus_948#0      GTTATCTAACCAGCTTGTGACGGAAACTATCTCGAAACTGCAATAACCCTTGCAATCAGA 420
consensus_948#1      -----------------------------TCTCGAAACTGCAATAACCCTTGCAATCAGA 31
                                                  *******************************

consensus_948#0      CAATTGGACGAAACCAGAACGACCAGGTTCAAATGATTTCATTCTACTCAATAAATGATA 480
consensus_948#1      CAATTGGACGAAACCAGAACGACCAGGTTCAAATGATTTCATTCTACTCAATAAATGATA 91
                     ************************************************************

consensus_948#0      ATCATGACTTCGCAAATATAGTTAACCTAAGCCACACCATTTAATCTAATTAACACAAGC 540
consensus_948#1      ATCATGACTTCGCAAATATAGTTAACCTAAGCCCCCCCATTTAATTTAATTAACCCAAGC 151
                     ********************************* * ********* ******** *****

consensus_948#0      ATTCAAGTAATTTGAACTTCCTAAAGTACTTGACCAAACGATTGATAGTAATGATAGATT 600
consensus_948#1      ATTCAAGTAATTTGAACTTCCTAAAGTACTTGACCAAACGATTGATAGTAATGATAGATT 211
                     ************************************************************

consensus_948#0      GAAAAAGAATTTCGGACTTGATTTCCACTATGATCGNTAGAACCAACTACTTCAGAGTCC 660
consensus_948#1      GAAAAAGAATTTCGGACTTGATTTCCCCTATGATCGTAAGAACCAACTACTTCAGAGTCC 271
                     ************************** *********  **********************

consensus_948#0      ANAACCATACGAACCAAGTCAAGTAATTATCTNTAAAAATCACTTCAACTAACCAGTCGA 720
consensus_948#1      AAAACCATACGAACCAAGTCAAGTAATTATCTTTAAAAATCACTTCAACTAACCAGTCGA 331
                     * ****************************** ***************************

consensus_948#0      TCTGTTGAATCATATTGATGAAAACATACANNAAGCTCGGGNTCCATAGAGGANNNAACG 780
consensus_948#1      TCTGTTGAATCATATTGATGAAACATAACAAAAAGCTCGGGTCCATAAGAGGAAAAAACG 391
                     ***********************    ***  *********  *   ******   ****

consensus_948#0      AAGAANATACA---CTAGTA-CACGAGAAA-CTGAAAT--GANACGA-GCGTACTTAT-- 830
consensus_948#1      AAAGAAAAATAACCCTAGTAACCCGAGAAAACTGAAAATGAAAACGATGCGTCACTATAT 451
                     **  * * * *   ****** * ******* ******    * **** ****   ***  

consensus_948#0      -TTNCACTA-GTGTTTT-GAGGTCATTT-ATTNGT--ACTA-TAT-ANTGTACCATATTA 882
consensus_948#1      TTTCCACTAAGTGTTTTTGAGGTCATTTTATTTGTTAACTAATATCAGTGTACC-CAATA 510
                      ** ***** ******* ********** *** **  **** *** * ******  * **

consensus_948#0      TGCATAGTCA----------- 892
consensus_948#1      TTTATTGCAATAGGTCATTAT 531
                     *  ** *  *