These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1420 fasta sequence [CGCTCACAAAATTGGATGATTTATGTGGCGCATATTTATTTTGTGTCGCCTTGTACTAATGTTTATGTGCTTACATAAAATAAATATGATCTAACGAATATATCAGACAGCAAACTGACAAAATTGAGAATCAAATCACCATTAAGTAAAATACACATCGACATCTCACAAACGACCATAATTTTCAGAAATCACTTCTCGATAGTAAATTTCAGAGCAGAATATTTCTTATTAAAAAAAATTATTCACACAAATTAGAATATAGTTCACCAAATAACAGCATTATGAGTCTAGGATTATTTGTATTCACTTGAAGTTTATCGATCATTCATTGTGTGGGTGTTTATAGCTTGACTATTATGTGATAATGCTGTTAATTTCGTGGTTTTTGCTAATTCACTCTGACTATCGTCGAATAGTTGAGTTCCTTCTGAAATATTTTCCTCTATATTATTATCAGAGTTTTGTCGCCATCATAATGATTATTGTCAATAGTATGGCTCTTATCATCGCAACTATAAATA-GCAATATTATTAGTAGTGGTGGAAATAGTACTATAATTGCTGCATATCCAATTCACGTAATCATGATTCACATCAAATCTCAACGTGATATGATCAATTAAAATTGTCGCGAAATCCTTCAGCTCAACTTCTTCGTCTGTTAGTATCGGGTTACCATCAACATAAACAGTATGAGATGAAAAATTAGCTAACCAAAATATACCATCTTTACTTAAGCGTATTTGACCATGACAACGTGATATACGTCCACTGTCAATACCTTCCATTGATAAATCGATATGCGGTTGACAA-ACGA-ATGAATTACGACCAAATATGACCT-TTCTTTCTTTTATCAAAAATTGTGTTCTTGATCCCCTAAGAGATGCTAATGCTGGATAAGCTGGTTGTGGATCCATTATTTCTAGACTATTAGTTATACACATTTCAACTAGACGTGTCCAACGTCTAGCCTCTTCTTTATTTCGACGCAAACGTGCCCACAAACGTCCGCGACGTCGATGTAATTCTAATCGACGTTTAAGATCAAAATCTTGATTATTTAGTAATGGCGGCACAGATGATGAACTTATAAAGGACAATAAATGTGATTTATTACTTGTTTCCTGCATCAGTGGTGAATGACTCTGATCGTGGCTAATTGATGATTTCAACTCTAAACCTGCAGCTGTTGTTCCACGTGTACTAGACGTTGTCGTTGTTGTTGGAGAAGAAGAAGAAGCGGCAGCAGTCGGAGAAGAGTGATGATGTGAACTAGGATGTACAACTGAATAATTTAATTGACTAGAATATTCTTTAAGGAGTACTTCCAAGACTGTTTGTGTAACAAGACCTTGGAAACCATGATATGATGTTTGATTTAACATATGTTGTCAACGTGACACTGACGATGGTTCAGT] [+] EMBL CD159448 [CGCTCACAAAATTGGATGATTTATGTGGCGCATATTTATTTTGTGTCGCCTTGTACTAATGTTTATGTGCTTACATAAAATAAATATGATCTAACGAATATATCAGACAGCAAACTGACAAAATTGAGAATCAAATCACCATTAAGTAAAATACACATCGACATCTCACAAACGACCATAATTTTCAGAAATCACTTCTCGATAGTAAATTTCAGAGCAGAATATTTCTTATTAAAAAAAATTATTCACACAAATTAGAATATAGTTCACCAAATAACAGCATTATGAGTCTAGGATTATTTGTATTCACTTGAAGTTTATCGATCATTCATTGTGTGGGTGTTTATAGCTTGACTATTATGTGATAATGCTGTTAATTTCGTGGTTTTTGCTAATTCACTCTGACTATCGTCGAATAGTTGAGTTCCTTCTGAAATATTTTCCTCTATATTA ] [-] EMBL CD192640 [ CCATAATTTTCAGAAATCACTTCTCGATAGTAAATTTCAGAGCAGAATATTTCTTATTAAAAAAAATTATTCACACAAATTAGAATATAGTTCACCAAATAACAGCATTATGAGTCTAGGATTATTTGTATTCACTTGAAGTTTATCGATCATTCATTGTGTGGGTGTTTATAGCTTGACTATTATGTGATAATGCTGTTAATTTCGTGGTTTTTGCTAATTCACTCTGACTATCGTCGAATAGTTGAGTTCCTTCTGAAATACTTTCCTCTATATTATTATCAGAGTTTTGTCGCC ] [-] EMBL CD159480 [ CACCAAATAACAGCATTATGAGTCTAGGATTATTTGTATTCACTTGAAGTTTATCGATCATTCATTGTGTGGGCGTTTATAGCTTGACTATTATGTGATAATGCTGTTAATTTCGTGGTTTTTGCTAATTCACTCTGACTATCGTCGAATAGTTGAGTTCCTTCTGAAATATTTTCCTCTATATTATTATCAGAGTTTTGTCGCCATCATAATGATTATTGTCAATAGTATGGCTCTTATCATCGCAACTATAAATACGCAATATTATTAGTAGTGGTGGAAATAGTACTATAATTGCTGCATATCCAATTCACGTAATCATGATTCACATCAAATCTCAACGTGATATGATCAATTAAAATTGTCGCGAAATCCTTCAGCTCAACTTCTTCGTCTG ] [-] EMBL CD083814 [ TATTATCAGAGTTTTGTCCCCATCATAATGATTATTGTCAATAGTATGGCTCTTATCATCGCAACTATAAATA GCAATATTATTAGTAGTGGTGGAAATAGTACTATAATTGCTGCATATCCAATTCACGTAATCATGATTCACATCAAATCTCAACGTGATATGATCAATTAAAATTGTCGCGAAATCCTTCAGCTCAACTTCTTCGTCTGTTAGTATCGGGTTACCATCAACATAAACAGTATGAGATGAAAAATTAGCTAACCAAAATATACCATCTTTACTTAAGCGTATTTGACCATGACAACGTGATATACGTCCACTGTCAATACCTTCCATTGATAAATCGATATGCGGTTGACAA ACGA ATGAATTACGACCAAATATGACCT TTCTTTCTTTTATCAAAAATTGTGTTCTTGATCCCC ] [-] EMBL CD134398 [ TTATCATCGCAANTATAAATA GCAATATTATTAGTAGTGGTGGAAATAGTACTATAATTGCTGCATATCCAATTCACGTAATCATGATTCACATCAAATCTCAACGTGATgggt ] [+] EMBL CD069483 [ CAAGACGATATGAATTACGATCAAATATGACCTGTTCTTTCTTTTATCAAAAATTGTGTTCTTGATCCCGTAAGAGATGCTAATGCTGGATAAGCTGGTTGTGGATCCATTATTTCTAGACTATTAGTTATACACATTTCAACTAGACGTGTCCAACGTCTAGCCTCTTCTTTATTTCGACGCAAACGTGCCCACAAACGTCCGCGACGTCGATGTAATTCTAATCGACGTTTAAGATCAAAATCTTGATTATTTAGTAATGGCGGCACAGATGATGAACTTATAAAGGACAATAAATGTGATTTATTACTTGTTTCCTGCATCAGTGGTGAATGACTCTGATCGTGGCTAATTGATGATTTCAACTCTAAACCTGCAGCTGTTGTTCCACGTGTACTAGACGTTGTCGTTGTTGTTGGAGAAGAAGAAGAAGCGGCAGCAGTCGGAGAAGAGTGATGATGTGAACTAGGATGTACAACTGAATAATTTAATTGACTAGAATATTCTTTAAGGAGTACTTCCAAGACTGTTTGTGTAA ] [-] EMBL AI976882 [ CCACAAAAGTCCGCGAAGTCGATGTAATTATAATCGACGTTTAAGATCAAAATCTTGATTATTTAGCAATGGCGGCACAGATGATGAACTTATAAAGGACAATAAATGTGATTTATTACTTGTATCTTGCATCAGTGGTGAATGACTCAGATAGTGGCTAATTGATGATTTCAACTCTAAACCTGCAGCTGTTGTTCCACGTGTACTAGACGTTGTCGTTGTTGTTGAAGAAGAAGAAGAAGCGGCAGCAGTCGGAGAAGAGTGATGATGTGAACTAGGATGTACAACTGAATAATTTAATTGACTAGAATATTCTTTAAGGAGTACTTCCAAGACTGTTTGTGTAACAAGACCTTGGAAACCATGATATGATGTTTGATTTAACATATGTTGTCAACGTGACACTGA ] [-] EMBL CD061841 [ GTACAACTGAATAATTTAATTGACTAGAATATTCTTTAAGGAGTACTTCCAGGACTGTTTGTGTAACAAGACCTTGGAAACCATGATATGATGTTTGATTTAACATATGTTGTCTACGTGACACTGACGATGGTTCAGT] consensusID : consensus_9483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [TGTTAAGTATGTATTTCTATCGTAGTCCCACTGGTCATTGAGTTAATGGGGTCAGAAAGAGTAACTTAGTCTATACAGTTAATCTAGGCGAATAAATCAGTAATCGGACTAGATAACATATAACCACTGCTATAATAACGGCCCTATCACACGGGCATCAATACAATATAAAAATGGGGCTTTTTCTTTGCTATCACATCGGAGTTACAGTGAGGAAAAAACAAATCAAAAACCTTTCTTTCTTTTATCAAAAATTGTGTTCTTGATCCCGTAAGAGATGCTAATGCTGGATAAGCTGGTTGTGGATCCATTATTTCTAGACTATTAGTTATACACATTTCAACTAGACGTGTCCAACGTCTAGCCTCTTCTTTATTTCGACGCAAACGTGCCCACAAACGTCCGCGACGTCGATGTAATTCTAATCGACGTTTAAGATCAAAATCTTGATTATTTAGTAATGGCGGCACAGATGATGAACTTATAAAGGACAATAAATGTGAT] [+] EMBL CD133466 [TGTTAAGTATGTATTTCTATCGTAGTCCCACTGGTCATTGAGTTAATGGGGTCAGAAAGAGTAACTTAGTCTATACAGTTAATCTAGGCGAATAAATCAGTAATCGGACTAGATAACATATAACCACTGCTATAATAACGGCCCTATCACACGGGCATCAATACAATATAAAAATGGGGCTTTTTCTTTGCTATCACATCGGAGTTACAGTGAGGAAAAAACAAATCAAAAACCTTTCTTTCTTTTATCAAAAATTGTGTTCTTGATCCCGTAAGAGATGCTAATGCTGGATAAGCTGGTTGTGGATCCATTATTTCTAGACTATTAGTTATACACATTTCAACTAGACGTGTCCAACGTCTAGCCTCTTCTTTATTTCGACGCAAACGTGCCCACAAACGTCCGCGACGTCGATGTAATTCTAATCGACGTTTAAGATCAAAATCTTGATTATTTAGTAATGGCGGCACAGATGATGAACTTATAAAGGACAATAAATGTGAT] consensusID : consensus_9483#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [AAAGTTGTCAACACAAGTTAGCTGTAAAAGTAATCATATCTGTAACCAAATAATTAGAAATTAGTTGAATAAGCCTATTATAATAGCCCATATTTTTGAAGAATAGGCTTCGACAGCAATAGTCGACAACTTCCTCACTTACAGCAACGACATAATTACTCAGTAGAGTAGAAAAATACTTACTTTAAGATCAAAATCTTGATTATTTAGTAATGGCGGCACAGATGATGAACTTATAAAGGACAATAAATGTGATTTATTACTTGTTTCTTGCATCAGTGGTGAATGACTCTGATCGTGGCTAATTGATGATTTCAA] [-] EMBL CD087010 [AAAGTTGTCAACACAAGTTAGCTGTAAAAGTAATCATATCTGTAACCAAATAATTAGAAATTAGTTGAATAAGCCTATTATAATAGCCCATATTTTTGAAGAATAGGCTTCGACAGCAATAGTCGACAACTTCCTCACTTACAGCAACGACATAATTACTCAGTAGAGTAGAAAAATACTTACTTTAAGATCAAAATCTTGATTATTTAGTAATGGCGGCACAGATGATGAACTTATAAAGGACAATAAATGTGATTTATTACTTGTTTCTTGCATCAGTGGTGAATGACTCTGATCGTGGCTAATTGATGATTTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9483#0 CGCTCACAAAATTGGATGATTTATGTGGCGCATATTTATTTTGTGTCGCCTTGTACTAAT 60 consensus_9483#1 ------------------------------------------------------------ consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 GTTTATGTGCTTACATAAAATAAATATGATCTAACGAATATATCAGACAGCAAACTGACA 120 consensus_9483#1 ------------------------------------------------------------ consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 AAATTGAGAATCAAATCACCATTAAGTAAAATACACATCGACATCTCACAAACGACCATA 180 consensus_9483#1 ------------------------------------------------------------ consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 ATTTTCAGAAATCACTTCTCGATAGTAAATTTCAGAGCAGAATATTTCTTATTAAAAAAA 240 consensus_9483#1 ------------------------------------------------------------ consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 ATTATTCACACAAATTAGAATATAGTTCACCAAATAACAGCATTATGAGTCTAGGATTAT 300 consensus_9483#1 ------------------------------------------------------------ consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 TTGTATTCACTTGAAGTTTATCGATCATTCATTGTGTGGGTGTTTATAGCTTGACTATTA 360 consensus_9483#1 ------------------------------------------------------------ consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 TGTGATAATGCTGTTAATTTCGTGGTTTTTGCTAATTCACTCTGACTATCGTCGAATAGT 420 consensus_9483#1 ------------------------------------------------------------ consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 TGAGTTCCTTCTGAAATATTTTCCTCTATATTATTATCAGAGTTTTGTCGCCATCATAAT 480 consensus_9483#1 ------------------------------------------------------------ consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 GATTATTGTCAATAGTATGGCTCTTATCATCGCAACTATAAATAGCAATATTATTAGTAG 540 consensus_9483#1 ------------------------------------------------------------ consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 TGGTGGAAATAGTACTATAATTGCTGCATATCCAATTCACGTAATCATG-ATTCACATCA 599 consensus_9483#1 --------------------------------------TGTTAAGTATGTATTTCTATCG 22 consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 AATCTCAACGTGATATGATCAATTAAAATTGTCGCGAAATCCTTCAGCTCAACTTCTTCG 659 consensus_9483#1 TAGTCCCACTGGTCAT--TGAGTTAATGGGGTCAGAAAGAG---TAACTTAGTCTATACA 77 consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 TCTGTTAGTATCGGGTTACCATCAACATAAACAGTATGAGATGAAAAATTAGCTAACCAA 719 consensus_9483#1 ---GTTAATCTAGGCGAATAA--ATCAGTAATCGGACTAGATAACATAT-AACCACTGCT 131 consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 AATATACCATCTTTACTTAAGCGTATTTGACCATGACAACGTGATATACGTCCACTGTCA 779 consensus_9483#1 ATAATAACGGCCCTA-TCACACGGGC---ATCAATACAATATAAAAATGGGGCTTTTTCT 187 consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 ATACCTTCCATTGATAAATCGATATGCGGTTGACAAACGAATGAATTACGACCAAATATG 839 consensus_9483#1 TTGCTATC-------ACATCGGAGTTACAGTGAGGAAAAAACAAATCAAAA--------- 231 consensus_9483#2 -----------------------------------------AAAGTTGTCA--------- 10 * * * consensus_9483#0 ACCTTTCTTTCTTTTATCAAAAATTGTGTTCTTGATCCCCTAAG-AGATGCTAATGCTGG 898 consensus_9483#1 ACCTTTCTTTCTTTTATCAAAAATTGTGTTCTTGATCCCGTAAG-AGATGCTAATGCTGG 290 consensus_9483#2 ACACAAGTTAGCTGTAAAAGTAATCATATCTGTAACCAAATAATTAGAAATTA--GTTGA 68 ** ** * ** * *** * * * * * *** *** ** * ** consensus_9483#0 ATAAGCTGGTTGTGG-ATCCATTATTTCTAGACTATTAGTTATACACATTTCAACTAGAC 957 consensus_9483#1 ATAAGCTGGTTGTGG-ATCCATTATTTCTAGACTATTAGTTATACACATTTCAACTAGAC 349 consensus_9483#2 ATAAGCCTATTATAATAGCCCATATTTTTGAAGAATAGGCT---------TCGAC-AGCA 118 ****** ** * * ** ***** * * ** * * ** ** ** consensus_9483#0 GTGTCCAACGTCTAGCCTCTTCTTTATTTCGACGCAAACGTGCCCACAAACGTCCGCGAC 1017 consensus_9483#1 GTGTCCAACGTCTAGCCTCTTCTTTATTTCGACGCAAACGTGCCCACAAACGTCCGCGAC 409 consensus_9483#2 ATAGTCGACAACT---TCCTCACTTACAGCAACG---ACATAATTAC-----TCAGTAGA 167 * * ** ** ** *** * *** ** * ** ** * consensus_9483#0 GTCGATGTAATTCTAATCGACGTTTAAGATCAAAATCTTGATTATTTAGTAATGGCGGCA 1077 consensus_9483#1 GTCGATGTAATTCTAATCGACGTTTAAGATCAAAATCTTGATTATTTAGTAATGGCGGCA 469 consensus_9483#2 GTAGAAA-AATACTTAC-----TTTAAGATCAAAATCTTGATTATTTAGTAATGGCGGCA 221 ** ** *** ** * ************************************** consensus_9483#0 CAGATGATGAACTTATAAAGGACAATAAATGTGATTTATTACTTGTTTCCTGCATCAGTG 1137 consensus_9483#1 CAGATGATGAACTTATAAAGGACAATAAATGTGAT------------------------- 504 consensus_9483#2 CAGATGATGAACTTATAAAGGACAATAAATGTGATTTATTACTTGTTTCTTGCATCAGTG 281 *********************************** consensus_9483#0 GTGAATGACTCTGATCGTGGCTAATTGATGATTTCAACTCTAAACCTGCAGCTGTTGTTC 1197 consensus_9483#1 ------------------------------------------------------------ consensus_9483#2 GTGAATGACTCTGATCGTGGCTAATTGATGATTTCAA----------------------- 318 consensus_9483#0 CACGTGTACTAGACGTTGTCGTTGTTGTTGGAGAAGAAGAAGAAGCGGCAGCAGTCGGAG 1257 consensus_9483#1 ------------------------------------------------------------ consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 AAGAGTGATGATGTGAACTAGGATGTACAACTGAATAATTTAATTGACTAGAATATTCTT 1317 consensus_9483#1 ------------------------------------------------------------ consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 TAAGGAGTACTTCCAAGACTGTTTGTGTAACAAGACCTTGGAAACCATGATATGATGTTT 1377 consensus_9483#1 ------------------------------------------------------------ consensus_9483#2 ------------------------------------------------------------ consensus_9483#0 GATTTAACATATGTTGTCAACGTGACACTGACGATGGTTCAGT 1420 consensus_9483#1 ------------------------------------------- consensus_9483#2 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||