|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1575 fasta sequence
[GGATGAGTTGCACTAGATTTCCACTGGCACGCAATACTACTTAAGTGGCTGTTAATCGGTTCCAGTCTTTCATTTATGACCACATCAGGAGTAGTAATGGATACTGGAAATACGGTGTTTTCTGAAAAATATAGTAAACCTGGTGTAATAGTGTCAGGTCATAAGTGTCCTGTTTGTCCTCATTCCTGTGCTTCTCAATCTGGACTAATATGTCATCTAACTACAAAACATAAAGAGCGTTTGGCTGCTGTTTGCAAAATTTGTCAACAGATCTTTGCATCGGATGCTATAGGTTCTCATGTACTTACATGCAAGGGTAGCTATTCCTGTCCTTACTGTCGTGCTACGTTTTCATCGCCCTCTTATTTGCAGCGTCACGTCTCCAGGCGTCACGAGGTCTTTGATCGCCCCACCTGTAGTGTTTGTGGGAAGGGTTTCTCATCGACCAATTCATTAGCTGTTCATAAAAGATTGCACCGAAATCATATGCCATACTACTGCCAGCTTTGCAGTGCTAATTTTGCTCAGAAAAGTCATCTTAAATTGCATTTAGACTCTCATCATGCCTATGTTGAATTAGATGAAACACCAAAACCTTTTGTGTGCAAAACCTGCGACCGCGGATTTCTGTTTATTATCAGTTTGCAACAACACCTATTACAGCATTGTAAGCTTAGTCCTAAAAAGTTACTGCCGTGCAAAGTGTGCAAAAAAAAACTTTGCTCACCAAAGTGAACTAGAGCGCCACAGCATCATTCACACGAAATGCTCACCATACCGATGCTCATTTTGTTCTCGTACGTTCACGCGTTCTAACTTGCTGAAGAACCATGCTTTGTTACACACCGATCCAAGCCTCCTAACCTGCTGTTACTGTTCTCGAGTCTACGCTTCTCGTTCTTATTTGCTACAGCACATAGAGAAGCATGAAGAAAAAATGCAAATATCTCGAATTTCAAGTTTAGGTACAACTTCCATTTCAGAGGTAGGAACGAGTATCCTTGACAATTTCAGAGTAAATGTACCGGAGGAAATGGATAAGGTATGTGAAGGTTCGACTCCCAAGGACTTATGTAATGATCAAATCGTTTCCCCAGATGTCGGCTTTCTACATGCGTTGTTATATGAACAAAATATGAATTGATTATTCAAATGATTGATATCCAGGTTGTTACATGTAGTTAGACTTATCAGTGATTTAGTTTCCTAGTCTTCCTTAATTCAGTATTCCTGCAGTTCACAGTCTTCGAACCATACGAATCGACTTTGTGCTCTAGTTCATTTTCACTTCCGTACGTTGATTTTACACTGCATTGCAGCAAACATTTCGCTATCAGCTGATTACAACGTACTGCATTTTTAGCTTTACAAGTCTTTCGAGGATAGCTCACCTTTCCGATTTGCAGTAATCTACATGGGCATTTCTTATTCTTATCTAACTTTTATCAAATTTGCTTCAGCTTATTCTATAATTGCTACTTACAACCATTTAAGTCGATTAAGTGACTATTTTTTTCACTAGATTTACTTCCTCCCCACACTACTTTCCATTTTGTGATAGCTATTGTATTTATC]
[+] EMBL CD189814 [GGATGAGTTGCACTAGATTTCCACTGGCACGCAATACTACTTAAGTGGCTGTTAATCGGTTCCAGTCTTTCATTTATGACCACATCAGGAGTAGTAATGGATACTGGAAATACGGTGTTTTCTGAAAAATATAGTAAACCTGGTGTAATAGTGTCAGGTCATAAGTGTCCTGTTTGTCCTCATTCCTGTGCTTCTCAATCTGGACTAATATGTCATCTAACTACAAAACATAAAGAGCGTTTGGCTGCTGTTTGCAAAATTTGTCAACAGATCTTTGCATCGGATGCTATAGGTTCTCATGTACTTACATGCAAGGGTAGCTATTCCTGTCCTTACTGTCGTGCTACGTTTTCATCGCCCTCTTATTTGCAG ]
[+] EMBL CD189803 [GGATGAGTTGCACTAGATTTCCACTGGCACGCAATACTACTTAAGTGGCTGTTAATCGGTTCCAGTCTTTCATTTATGACCACATCAGGAGTAGTAATGGATACTGGAAATACGGTGTTTTCTGAAAAATATAGTAAACCTGGTGTAATAGTGTCAGGTCATAAGTGTCCTGTTTGTCCTCATTCCTGTGCTTCTCAATCTGGACTAATATGTCATCTAACTACAAAACATAAAGAGCGTTTGGCTGCTGTTTGCAAAATTTGTCAACAGATCTTTGCATCGGATGCTATAGGTTCTCATGTACTTACATGCAAGGGTAGCTATTCCTGTCCTTACTGTCGTGCTACGTTTTCATCGCCCTCTTATTTGCAG ]
[-] EMBL CD189643 [ ATAGTGTCAGGTCATAAGTGTCCTGTTTGTCCTCATTCCTGTGCTTCTCAATCTGTACTAATATGTCATCTAACTACAAAACATAAAGAGCGTTTGGCTGCTGTTTGCAAAATTTGTCAACAGATCTTTGCATCGGATGCTATAGGTTCTCATGTACTTACATGCAAGGGTAGCTATTCCTGTCCTTACTGTCGTGCTACGTTTTCATCGCCCTCTTATTTGCAGC ]
[+] EMBL CD117108 [ CTTACATGCAAGGGTAGCTATTCCTGTCCTTACTGTCGTGCTACGTTTTCATCGCCCTCTTATTTGCAGCGTCACGTCTCCAGGCGTCACGAGGTCTTTGATCGCCCCACCTGTAGTGTTTGTGGGAAGGGTTTCTCATCGACCAATTCATTAGCTGTTCATAAAAGATTGCACCGAAATCATATGCCATACTACTGCCAGCTTTGCAGTGCTAATTTTGCTCAGAAAAGTCATCTTAAATTGCATTTAGACTCTCATCATGCCTATGTTGAATTAGATGAAACACCAAAACCTTTTGTGTGCAAAACCTGCGACCGCGGATTTCTGTTTATTATCAGTTTGCAACAACACCTATTACAGCATTGTAAGCTTAGTCCTAAAAAGTTACTGCCGTGCAAAGTGTGCAAAAAAAAACTTTGCTCACCAAAGTGAACTAGAGCGCCACAG ]
[+] EMBL CD079884 [ gagGATTGCACCGAAATCATATGCCATACTACTGCCAGCTTTGCAGTGCTAATTTTGCTCAGAAAAGTCATCTTAAATTGCATTTAGACTCTCATCATGCCTATGTTGAATTAGATGAAACACCAAAACCTTTTGTGTGCAAAACCTGCGACCGCGGATTTCTGTTTATTATCAGTTTGCAACAACACCTATTACAGCATTGTAAGCTTAGTCCTAAAAAGTTACTGCCGTGCAAAGTGTGC AAAAAAAACTTTGCTCACCAAAGTGAACTAGAGCGCCACAGCATCATTCACACGAAATGCTCACCATACCGATGCTCATTTTGTTCTCGTACGTTCACGCGTTCTAACTTGCTGAAGAACCATGCTTTGTTACACACCGATCCAAGCCTCCTAACCTGCTGTTACTGTTCTCGAGTCTACGCTTCTCGTTCTTATTTGCTACAGCACATAGAGAAGCATGAAGAAAAAATGCAAATATCTCGAATTTCAAGTTTAGGTACAACTTCCATTTCAGAGGTAGGAACGAGTATCCTTGACAATTTCAGAGTAAATGTACCGGAGGAAATGGATAAGGTATGTGAAGGTTCGACTCCCAAGGACTTATGTAATGATCAAATCGTTTCCCCAGATGTCGGCTTTCTACATGCGTTGTTATATGAACAAAATATGAATTGATTATTCAAATGATTG ]
[+] EMBL CD160246 [ TGCTCACCATACCGATGCTCATTTTGTTCTCGTACGTTCACGCGTTCTAACTTGCTGAAGAACCATGCTTTGTTACACACCGATCCAAGCCTCCTAACCTGCTGTTACTGTTCTCGAGTCTACGCTTCTCGTTCTTATTTGCTACAGCACATAGAGAAGCATGAAGAAAAAATGCAAATATCTCGAATTTCAAGTTTAGGTACAACTTCCATTTCAGAGGTAGGAACGAGTATCCTTGACAATTTCAGAGTAAATGTACCGGAGGAAATGGATAAGGTATGTGAAGGTTCGACTCCCAAGGACTTATGTAATGATCAAATCGTTTCCCCAGATGTCGGCTTTCTACATGCGTTGTTATATGAACAAAATATGAATTGATTATTCAAATGATTGATATCCAGGTTGTTACATGTAGTTAGACTTATCAGTGATTTA ]
[+] EMBL CD159973 [ TGCTCACCATACCGATGCTCATTTTGTTCTCGTACGTTCACGCGTTCTAACTTGCTGAAGAACCATGCTTTGTTACACACCGATCCAAGCCTCCTAACCTGCTGTTACTGTTCTCGAGTCTACGCTTCTCGTTCTTATTTGCTACAGCACATAGAGAAGCATGAAGAAAAAATGCAAATATCTCGAATTTCAAGTTTAGGTACAACTTCCATTTCAGAGGTAGGAACGAGTATCCTTGACAATTTCAGAGTAAATGTACCGGAGGAAATGGATAAGGTATGTGAAGGTTCGACTCCCAAGGACTTATGTAATGATCAAATCGTTTCCCCAGATGTCGGCTTTCTACATGCGTTGTTATATGAACAAAATATGAATTGATTATTCAAATGATTGATATCCAGGTTGTTACATGTAGTTAGACTTATCAGTGAT ]
[-] EMBL CD197491 [ AAGAACCATGCTTTGTTACACACCGATCCAAGCCTCCTAACCTGCTGTTACTGTTCTCGAGTCTACGCTTCTCGTTCTTATTTGCTACAGCACATAGAGAAGCATGAAGAAAAAATGCAAATATCTCGAATTTCAAGTTTAGGTACAACTTCCATTTCAGAGGTAGGAACGAGTATCCTTGACAATTTCAGAGTAAATGTACCGGAGGAAATGGATAAGGTATGTGAAGGTTCGACTCCCAAGGACTTATGTA ]
[-] EMBL BG932895 [ agcaCCACCGAGGTCGGCTTTCTACATGCGTTGTTATATGAACAAAATATGAATTGATTATTCAAATGATTGATATCCAGGTTGTTACATGTAGTTAGACTTATCAGTGATTTAGTTTCCTAGTCTTCCTTAATTCAGTATTCCTGCAGTTCACAGTCTTCGAACCATACGAATCGACTTTGTGCTCTAGTTCATTTTCACTTCCGTACGTTGATTTTACACTGCATTGCAGCAAACATTTCGCTATCAGCTGATTACAACGTACTGCATTTTTAGCTTTACAAGTCTTTCGAGGATAGCTCACCTTTCCGATTTGCAGTAATCTACATGGGCATTTCTTATTCTTATCTAACTTTTATCAAATTTGCTTCAGCTTATTCTATAATTGCTACTTACAACCATTTAAGTCGATTAAGTGACTATTTTTTTCACTAGATTTACTTCCTCCCCACACTACTTTCCATTTTGTGATAGCTATTGTATTTATC]
consensusID : consensus_9488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence
[TTTTTTTTTTTTTTTTTAGCCTTTTGAAATTTATTGTAAACAGCATTTTTCCAGAAAACATGTAAAATGCATGAGGGCAGTGTAAAAAAATCAAAAAATGAGATACATATAAAAACCAAACGATATCGATCAAGCAGTTATGCTCTGACATCATGTAAGTCCGGTGGATAACTTAAGAAAATGTAAGTGACGTTACATTGATGTAAGATAGACAAAAATTGACTTATAATCTCATCACTGAGGAAGTTGAAAAGGAGTTGAGAACCGCATAAAAACATAACCACGCTTCCAACTCCATAGAAAGACACAAGGTCCGAAAAGAGAACCGGATTATGATTATAAGACGAAAGCATGGAACCTAGGTCGTAATTGCTTGGTCCAAGAATTCGGTAACACTTGATAAATACAATAGCTATTCACAAAATGGAAAGTAGTGTGGAGAGGGAAGTAAATCCTAATGAAAAAATAGTCACTTAATCGACTTAAAGGTTG]
[+] EMBL AI394925 [TTTTTTTTTTTTTTTTTAGCCTTTTGAAATTTATTGTAAACAGCATTTTTCCAGAAAACATGTAAAATGCATGAGGGCAGTGTAAAAAAATCAAAAAATGAGATACATATAAAAACCAAACGATATCGATCAAGCAGTTATGCTCTGACATCATGTAAGTCCGGTGGATAACTTAAGAAAATGTAAGTGACGTTACATTGATGTAAGATAGACAAAAATTGACTTATAATCTCATCACTGAGGAAGTTGAAAAGGAGTTGAGAACCGCATAAAAACATAACCACGCTTCCAACTCCATAGAAAGACACAAGGTCCGAAAAGAGAACCGGATTATGATTATAAGACGAAAGCATGGAACCTAGGTCGTAATTGCTTGGTCCAAGAATTCGGTAACACTTGATAAATACAATAGCTATTCACAAAATGGAAAGTAGTGTGGAGAGGGAAGTAAATCCTAATGAAAAAATAGTCACTTAATCGACTTAAAGGTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9488#0 GGATGAGTTGCACTAGATTTCCACTGGCACGCAATACTACTTAAGTGGCTGTTAATCGGT 60
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 TCCAGTCTTTCATTTATGACCACATCAGGAGTAGTAATGGATACTGGAAATACGGTGTTT 120
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 TCTGAAAAATATAGTAAACCTGGTGTAATAGTGTCAGGTCATAAGTGTCCTGTTTGTCCT 180
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 CATTCCTGTGCTTCTCAATCTGGACTAATATGTCATCTAACTACAAAACATAAAGAGCGT 240
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 TTGGCTGCTGTTTGCAAAATTTGTCAACAGATCTTTGCATCGGATGCTATAGGTTCTCAT 300
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 GTACTTACATGCAAGGGTAGCTATTCCTGTCCTTACTGTCGTGCTACGTTTTCATCGCCC 360
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 TCTTATTTGCAGCGTCACGTCTCCAGGCGTCACGAGGTCTTTGATCGCCCCACCTGTAGT 420
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 GTTTGTGGGAAGGGTTTCTCATCGACCAATTCATTAGCTGTTCATAAAAGATTGCACCGA 480
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 AATCATATGCCATACTACTGCCAGCTTTGCAGTGCTAATTTTGCTCAGAAAAGTCATCTT 540
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 AAATTGCATTTAGACTCTCATCATGCCTATGTTGAATTAGATGAAACACCAAAACCTTTT 600
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 GTGTGCAAAACCTGCGACCGCGGATTTCTGTTTATTATCAGTTTGCAACAACACCTATTA 660
consensus_9488#1 --------------------------------------------TTTTTTTTTTTTTTTT 16
* **
consensus_9488#0 CAGCATTGTAAGCTTAGTCCTAAAAAGTTACTGCCGTGCAAAGTGTGCAAAAAAAAACTT 720
consensus_9488#1 TAGCCTTTTGAAATTTATTGTAAACAGC-ATTTTTCCAGAAAACATGTAAAATGCA---- 71
*** ** * * ** * **** ** * * *** ** **** *
consensus_9488#0 TGCTCACCAAAGTGAACTAGAGCGCCACAGCATCATTCACACGAAATGCTCACCATACCG 780
consensus_9488#1 ---TGAGGGCAGTGTAAAAAAATCAAAAAATGAGATACATATAAAAACCAAACGATATCG 128
* * **** * * * * * ** ** * *** * ** *** **
consensus_9488#0 ATGCTCATTTTGTTCTCGTACGTTCACGCGTTCTAACTTGCTGAAGAACCATGCTTTGTT 840
consensus_9488#1 ATCAAGCAGTTATGCTCTGACAT-----CATGTAAGTCCGGTGGATAAC---------TT 174
** ** * *** ** * * * * * ** * *** **
consensus_9488#0 ACACACCGATCCAAGCCTCCTAACCTGCTGTTACTGTTCTCGAGTCTACGCTTCTCGTTC 900
consensus_9488#1 AAGAA--AATGTAAG-----TGACGTTACATTGATGTAAGATAGACAAAAATTGAC-TTA 226
* * ** *** * ** * ** *** ** * * ** * **
consensus_9488#0 TTATTTGCTACAGCACATAGAGAAGCATGAAGAAAAAATGCAAATATCTCGAATTTCAAG 960
consensus_9488#1 TAATCT----CATCAC-TGAGGAAGT-TGAAAAGGAGTTGAGAACCGCATAAA-----AA 275
* ** * ** *** * **** **** * * ** ** * ** *
consensus_9488#0 TTTAGGTACAACTTCCATTTCAGAGGTAGGAACGAGTATCCTTGACAATTTCAGAGTAAA 1020
consensus_9488#1 CATAACCACGCTTCCAACTCCATAGAAAGACACAAGGTCCGAAAAGAGAACCGGATTATG 335
** ** * * * * ** ** ** ** ** * * * * ** **
consensus_9488#0 TGTACCGGAGGAAA-TGGATAAGGTATGTGAAGGTTCGACTCCCAAGGACTTATGTAATG 1079
consensus_9488#1 ATTATAAGACGAAAGCATGGAACCTAGGTCGTAATTGCTTGGTCCAAGAATTCGGTAACA 395
** ** **** ** ** ** ** * * ** ** ****
consensus_9488#0 ATCAAATCGTTTCCCCAGATGTCGGCTTTCTACATGCGTTGTTATATGAACAAAATATGA 1139
consensus_9488#1 CTTGATAAATAC-----AATAGCTATTCACAAAATGGAAAGTAGTGTGGAGAGGGAAGTA 450
* * * ** * * * * *** ** * ** * * * *
consensus_9488#0 ATTGATTATTCAAATGATTGATATCCAGGTTG-TTACATGTAGTTAGACTTATCAGTGAT 1198
consensus_9488#1 AATC-CTAATGAAAAAATAGTCACTTAATCGACTTAAAGGTTG----------------- 492
* * ** * *** ** * * * *** * ** *
consensus_9488#0 TTAGTTTCCTAGTCTTCCTTAATTCAGTATTCCTGCAGTTCACAGTCTTCGAACCATACG 1258
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 AATCGACTTTGTGCTCTAGTTCATTTTCACTTCCGTACGTTGATTTTACACTGCATTGCA 1318
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 GCAAACATTTCGCTATCAGCTGATTACAACGTACTGCATTTTTAGCTTTACAAGTCTTTC 1378
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 GAGGATAGCTCACCTTTCCGATTTGCAGTAATCTACATGGGCATTTCTTATTCTTATCTA 1438
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 ACTTTTATCAAATTTGCTTCAGCTTATTCTATAATTGCTACTTACAACCATTTAAGTCGA 1498
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 TTAAGTGACTATTTTTTTCACTAGATTTACTTCCTCCCCACACTACTTTCCATTTTGTGA 1558
consensus_9488#1 ------------------------------------------------------------
consensus_9488#0 TAGCTATTGTATTTATC 1575
consensus_9488#1 -----------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||