These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 865 fasta sequence [CCTCGGTACGAGGACCACACTTCCGATGGTTAAGATTACGAAGTTGGTTGTTTGTGGACCGACTGGTTCCGGGAAAACTTCTCTGATTGAACACTGTATATATGGGAACTATTTTGAAAGGCAACCAGATGACTTTATTTCGACTTATGAAGACACGTATAATGCTGTTGTCGAGACAGATCGTGGTTCTAAAGAAAAAGTTCGAATTTACGATCTTGGAGGGATGACTAAATTGGAAAAACATTTTGTGAATTGTGCTGATGCATTCATTTTGGTATATGATATAAGCGATTCCAAATCTTTCAGCTCTGTTCAAAGTCTAAAACAAGACATTGACAAATATCGCGAGAAACGTG-ATTTATGCATTGT-AC-TTAGCTGTCACAAGGTTGATAAACCTAAAGATGCAACTTTAGATTCTGCAGAAATTTCTCGATGG-TC-TCAATCCGAGAAAGTGGCAAATATATTTGAAACAACTGTGTATGACCGCCAATCACTCATGAATCTATTCACGTGGACTGTTTCCCGTATCACTCAGTCTCAAAGTAAATCAGGATTTTCATTCGGTAAAAAGGATGTTCGGTGAAAGAAGAACTCTCAACGAACTCAAAGAAATTGCAAGCATCATTA-TTATGTGATGG-AAAATTTTAAAAAGAAACATATTCTCTCCCATATATATA-TTGAAATACAAAACAACTAAATT-GTAAAGAAAGCTCA-TTGTTTCCAACCATCTGTTTATGACTAACCTTTTGAATACTATTATTGTTATTATTAT-TATTATTACTGAAT-AGAATAATCTC-TTATTATTATTA-TGACTAACCTTAACCTAAGTAAAATTTGCCACTTTTTTTT-TCTCCCTGGGTAATAA] [+] EMBL CD082350 [CCTCGGTACGAGGACCACACTTCCGATGGTTAAGATTACGAAGTTGTTTGTTTGTGGACCGACTGGTTCCGGGAAAACTTCTCTGATTGAACACTGTATATATGGGAACTATTTTGAAAGGCAACCAGATGACTTTATTTCGACTTATGAAGACACGTATAATGCTGTTGTCGAGACAGATCGTGGTTCTAAAGAAAAAGTTCGAATTTACGATCTTGGAGGGATGACTAAATTGGAAAAACATTTTGTGAATTGTGCTGATGCATTCATTTTGGTATATGATATAAGCGATTCCAAATCTTTCAGCTCTGTTCAAAGTCTAAAACAAGACATTGACAAATATCGCGAGAAACGTG ATTTATGCATTGT AC TTAGCTGTCACAAGGTTGATAAACCTAAAGATGCAACTTTAGATTCTGCAGAAATTTCTCGATGG TC TCAATCCGAGAAAGTGGCAAATATATTTGAAACAACTGTGTATGACCGCCAATCACTCATGAATCTATTCACGTGGACTGTTTCCCGTATCACTCAGTCTCAAAGT AATCAGGATTTTCATTCGGTAAAAg ] [+] EMBL CD082485 [ cCCACACTTCCGATGGTTAAGATTACGAAGTTGGTTGTTTGTGGACCGACTGGTTCCGGGAAAACTTCTCTGATTGAACACTGTATATATGGGAACTATTTTGAAAGGCAACCAGATGACTTTATTTCGACTTATGAAGACACGTATAATGCTGTTGTCGAGACAGATCGTGGTTCTAAAGAAAAAGTTCGAATTTACGATCTTGGAGGGATGACTAAATTGGAAAAACATTTTGTGAATTGTGCTGATGCATTCATTTTGGTATATGATATAAGCGATTCCAAATCTTTCAGCTCTGTTCAAAGTCTAAAACAAGACATTGACAAATATCGCGAGAAACGTG ATTTATGCATTGT AC TTAGCTGTCACAAGGTTGATAAACCTAAAGATGCAACTTTAGATTCTGCAGAAATTTCTCGATGG TC TCAATCCGAGAAAGTGGCAAATATATTTGAAACAACTGTGTATGACCGCCAATCACTCATGAATCTATTCACGTGGACTGTTTCCCGTATCACTCAGTCTCAAAGTAAATCAGGATTTTCATTCGGTAAAAAGGATGTTCGGTGAAAGAAGAACTCTCAACGAACTCAAAGAAATTGGCAGCATCATTA TTATGTGATGG GAAATTTNTAAAAGAAACATATTCTCT CCATATATATA TG AATAC ANAC ACTAAATT GT AAG AAGCTCA TTGTTNC ACCATCTG TTATGACT ACCTTTTTGATACTA TATGGTANTTA TA TA TA TACTG AT AGAAT ATCTC TATTA TA TA TGACT ACCTTNA CT AGT AAATTTG ] [+] EMBL CD079368 [ CCGATGGTTAAGATTACGAAGTTGGTTGTTTGTGGACCGACTGGTTCCGGGAAAACTTCTCTGATTGAACACTGTATATATGGGAACTATTTTGAAAGGCAACCAGATGACTTTATTTCGACTTATGAAGACACGTATAATGCTGTTGTCGAGACAGATCGTGGTTCTAAAGAAAAAGTTCGAATTTACGATCTTGGAGGGATGACTAAATTGGAAAAACATTTTGTGAATTGTGCTGATGCATTCATTTTGGTATATGATATAAGCGATTCCAAATCTTTCAGCTCTGTTCAAAGTCTAAAACAAGACATTGACAAATATCG GA AAACGGGTGTTTA GCGTTTTCTCTTTCCCTGNCNCAAGGTTGATAAACCTAAAGATGCAACTTTAGATTCTGCAG AATTT TCGATGGTTCATCCGCCCGAGAAAGTGGCAAATATATTTGAAACAACTGTGTATGACCGCCAATCACTCATGAATCTATTCACGTGGACTGTTTCCCGTATCACTCAGTCTCAAAGTAAATCAGGATTTTCATTCGGT AAAAGGATGTTCGGTGAAAG AGAACTCTCACCGAACTCAAAGAAATTGCAAGCATCATTATTTATGTGATGGAAAAATTTTAAAAAGAAACATATTCTCTCCCATATATTTATTTGAAATACAAAACACCTAAATTGGTAAAGAAAGCTTATTTGTTTCCAACCATCTGTTAATGACTAACCTTTTGAAAACTATTAATGGTAATAATATATATTATTACCGGATAAGAA AATCCCTTTATATTTATTA TGACCAACCTTACCC AGAAAAATTTGGCCCTTTTTTTT TCTCCCTGGGTAA ] [-] EMBL CD073645 [ GGGATGACTAAATTGGAAAAACATTTTGTGAATTGTGCTGATGCATTCATTNTGGTATATGATATAAGCGATTCCAAATCTTTCAGCTCTGTTCAAAGTCTAAAACAAGACATTGACAAATATCGCGAGAAACGTG ATTTATGCATTGT AC TTAGCTGTCACAAGGTTGATAAACCTAAAGATGCAACTTTAGATTCTGCAGAAATTTCTCGATGG TC TCAATCCGAGAAAGTGGCAAATATATTTGAAACAACTGTGTATGACCGCCAATCACTCATGAATCTATTCACGTGGACTGTTTCCCGTATCACTCAGTCTCAAAGTAAATCAGGATTTTCATTCGGTAAAAAGGATGTTCGGTGAAAGAAGAACTCTCAACGAACTCAAAGAAATTGCAAGCATCATTA TTATGTGATGG AAAATTTTAAAAAGAAACATATTCTCTCCCATATATATA TTGAAATACAAAACAACTAAATT GTAAAGAAAGCTCA TTGTTTCCAACCATCTGTTTATGACTAACCTTTTGAATACTATTATTGTTATTATTAT TATTATTACTGAAT AGAATAATCTC TTATTATTATTA TGACTAACCTTAACCTAAGTAAAATTTGCCACTTTTTTTTCATTCCATGTATAATAA] [-] EMBL CD076082 [ CTAAATTGGAAAAACATTTTGTGAATTGTGCTGATGCATTCATTTTGGTATATGATATAAGCGATTCCAAATCTTTCAGCTCTGTTCAAAGTCTAAAACAAGACATTGACAAATATCGCGAGAAACGTG ATTTATGCATTGT AC TTAGCTGTCACAAGGTTGATAAACCTAAAGATGCAACTTTAGATTCTGCAGAAATTTCTCGATGG TC TCAATCCGAGAAAGTGGCAAATATATTTGAAACAACTGTGTATGACCGCCAATCACTCATGAATCTATTCACGTGGACTGTTTCCCGTATCACTCAGTCTCAAAGTAAATCAGGATTTTCATTCGGTAAAAAGGATGTTCGGTGAAAGAAGAACTCTCAACGAACTCAAAGAAATTGCAAGCATCATTA TTATGTGATGG AAAATTTTAAAAAGAAACATATTCTCTCCCATATATATA TTGAAATACAAAACAACTAAATT GTAAAGAAAGCTCA TTGTTTCCAACCATCTGTTTATGACTAACCTTTTGAATACTATTATTGTTATTATTAT TATTATTACTGAAT AGAATAATCTC TTATTATTATTA TGACTAACCTTAACCTAAGTAAAATTTGCCAC ] [-] EMBL CD075950 [ GCATTGT AC TTAGCTGTCACAAGGTTGATAAACCTAAAGATGCAACTTTAGATTCTGCAGAAATTTCTCGATGG TC TCAATCCGAGAAAGTGGCAAATATATTTGAAACAACTGTGTATGACCGCCAATCACTCATGAATCTATTCACGTGGACTGTTTCCCGTATCACTCAGTCTCAAAGTAAATCAGGATTTTCATTCGGTAAAAAGGATGTTCGGTGAAAGAAGAACTCTCAACGAACTCAAAGAAATTGCAAGCATCATTA TTATGTGATGG AAAATTTTAAAAAGAAACATATTCTCTCCCATATATATA TTGAAATACAAAACAACTAAATT GTAAAGAAAGCTCA TTGTTTCCAACCATCTGTTTATGACTAACCTTTTGAATACTATTATTGTTATTATTAT TATTATTACTGAAT AGAATAATCTC TTATTATTATTAGTGACTAACCTTAACCTAAGTAAAATTTGCCAC ] consensusID : consensus_9489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence [AATCAATGTTTTATGAATATTATCTTTAAATAGTGAGAGTTCCTTTCTAATTTCCTTGTCATGTATACATATGATGATCATTTACTTAAGAATATACTTTGATTACCAGATTTCGACTTATGAAGACACGTATAATGCTGTTGTCGAGACAGATCGTGGTTCTAAAGAAAAAGTTCGAATTTACGATCTTGGAGGGATGACTAAATTGGAAAAACATTTTGTGAATTGTGCTGATGCATTCATTTTGGTATATGATATAAGCGATTCCAAATCTTTCAGCTCTGTTCAAAGTCTAAAACAAGACATTGACAAATATCGCGAGAAACGTGATTTATGCATTGTACTTAGCTGTCACAAGGTTGATAAACCTAAAGATGCAACTTTAGATTCTGCAGAAATTTCTCGATGGTCTCAATCCGAGAAAGTGGCANATATATTTGAAA] [+] EMBL CD090972 [AATCAATGTTTTATGAATATTATCTTTAAATAGTGAGAGTTCCTTTCTAATTTCCTTGTCATGTATACATATGATGATCATTTACTTAAGAATATACTTTGATTACCAGATTTCGACTTATGAAGACACGTATAATGCTGTTGTCGAGACAGATCGTGGTTCTAAAGAAAAAGTTCGAATTTACGATCTTGGAGGGATGACTAAATTGGAAAAACATTTTGTGAATTGTGCTGATGCATTCATTTTGGTATATGATATAAGCGATTCCAAATCTTTCAGCTCTGTTCAAAGTCTAAAACAAGACATTGACAAATATCGCGAGAAACGTGATTTATGCATTGTACTTAGCTGTCACAAGGTTGATAAACCTAAAGATGCAACTTTAGATTCTGCAGAAATTTCTCGATGGTCTCAATCCGAGAAAGTGGCANATATATTTGAAA] [-] EMBL CD167752 [ ATATACTTTGATTACCAGATTTCGACTTATGAAGACACGTATAATGCTGTTGTCGAGACAGATCGTGGTTCTAAAGAAAAAGTTCGAATTTACGATCTTGGAGGGATGACTAAATTGGAAAAACATTTTGTGAATTGTGCTGATGTATTCATTTTGGTATATGATATAAGCGATTCCAAATCTTTCAGCTCTGTTCAAAGTCTAAAACAAGACATTGACAAAT ] consensusID : consensus_9489#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 350 fasta sequence [CCTGTTTAACCCACACTTCCGATGGTTAAGATTACGAAGTTGGTTGTTTGTGGACCGACTGGTTCCGGGAAAACTTCTCTGATTGAACACTGTATATATGGGAACTATTTTGAAAGGCAACCAGATGACTTTGCAAGTCATTTCGTTATACTAGCATTCTTATTTTTTAAACCTTGATGCCGTTTTCTTATGCAACAGACTTCATTGTCGACAATCAATCTCAGGATAAGTGTATGGTGACTGTTAAGAGCTTCAACTTGTTTCTTAATGTAGTTGATCTGGAAATAAAATACACCACACTAGTTGATCACTAGTTGATTCAAGTTAACAGCAACCAAGCGACTGAACTA] [+] EMBL CD178898 [CCTGTTTAACCCACACTTCCGATGGTTAAGATTACGAAGTTGGTTGTTTGTGGACCGACTGGTTCCGGGAAAACTTCTCTGATTGAACACTGTATATATGGGAACTATTTTGAAAGGCAACCAGATGACTTTGCAAGTCATTTCGTTATACTAGCATTCTTATTTTTTAAACCTTGATGCCGTTTTCTTATGCAACAGACTTCATTGTCGACAATCAATCTCAGGATAAGTGTATGGTGACTGTTAAGAGCTTCAACTTGTTTCTTAATGTAGTTGATCTGGAAATAAAATACACCACACTAGTTGATCACTAGTTGATTCAAGTTAACAGCAACCAAGCGACTGAACTA] [+] EMBL CD188392 [ ATGGTTAAGATTACGAAGTTGGTTGTTTGTGGACCGACTGGTTCCGGGAAAACTTCTCTGATTGAACACTGTATATATGGGAACTATTTTGAAAGGCAACCAGATGACTTTGCAAGTCATTTCGTTATACTAGCATTCTTATTTTTTAAACCTTGATGCCGTTTTCTTATGCAACAGACTTCATTGTCGACCATCAATCTCAGGATAAGTGTATGGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9489#0 CCTCGGTACGAGGACCACACTTCCGATGGTTAAGATTACGAAGTTGGTTGTTTGTGGACC 60 consensus_9489#1 ---------------------------AATCAATGTTTTATGAATA-TTATCTTTAAATA 32 consensus_9489#2 ------------------------------------------------------------ consensus_9489#0 GACTG-GTTCCGGGAAAACTTCTCTGAT-TGAACACTGTATATATGGGAACTATTTTGAA 118 consensus_9489#1 GTGAGAGTTCCTTTCTAATTTCCTTGTCATGTATAC-ATATGATGATCATTTACTTAAGA 91 consensus_9489#2 ------------------------------------------------------------ consensus_9489#0 AGGCAACCAGATGA--CTTTATTTCGACTTATGAAGAC-ACGTATAATGCTGTTGTCGAG 175 consensus_9489#1 ATATACTTTGATTA--CCAGATTTCGACTTATGAAGAC-ACGTATAATGCTGTTGTCGAG 148 consensus_9489#2 ------CCTGTTTAACCCACACTTCCGATGGTTAAGATTACGAAGTTGGTTGTTTGTG-G 53 * * * * * *** * * **** *** * * **** * * consensus_9489#0 ACAGATCGTGGTTCTAAAGAAAAAGTTCGAATTTACGATCTTGGAGGGATGACTAAATTG 235 consensus_9489#1 ACAGATCGTGGTTCTAAAGAAAAAGTTCGAATTTACGATCTTGGAGGGATGACTAAATTG 208 consensus_9489#2 ACCGAC--TGGTTCCGGGAAAACTTCTCTGATTGAACACTGTATATATGGGAACTATTTT 111 ** ** ****** *** ** *** * * * * ** * ** consensus_9489#0 GAAAAACATTTTGTGAATTGTGCTGATGCATTCATTTTGGTATATGATATAAGCGATTCC 295 consensus_9489#1 GAAAAACATTTTGTGAATTGTGCTGATGCATTCATTTTGGTATATGATATAAGCGATTCC 268 consensus_9489#2 GAAAGGCAACCAGATGACTTTGCAAGTCATTTCGTTATACTA-GCATTCTTATT--TTTT 168 **** ** * * * *** * *** ** * ** * * * ** consensus_9489#0 AAATCTTTCAGCTCTGTTCAAAGTC--TAAAACAAGACATTGACAAATA-TCGCGAGAAA 352 consensus_9489#1 AAATCTTTCAGCTCTGTTCAAAGTC--TAAAACAAGACATTGACAAATA-TCGCGAGAAA 325 consensus_9489#2 AAACCTTGATGCCGTTTTCTTATGCAACAGACTTCATTGTCGACAATCAATCTCAGGATA 228 *** *** ** * *** * * * * * ***** * ** * ** * consensus_9489#0 CGTGATTTATGCATTGTACTTAGCTGTCACAAGGTTGATAAACCTAAAGATGCAACTTTA 412 consensus_9489#1 CGTGATTTATGCATTGTACTTAGCTGTCACAAGGTTGATAAACCTAAAGATGCAACTTTA 385 consensus_9489#2 AGTGTATGGTG-ACTGTTAAGAGCTTCAACTTGTTTCTTAATGTAGTTGATCTGGAAATA 287 *** * ** * *** **** ** * ** *** *** ** consensus_9489#0 GATT---CTGCAGAAATTTCTCGATGGTCTCAATCCGAGAAAGTGGCAAATATAT--TTG 467 consensus_9489#1 GATT---CTGCAGAAATTTCTCGATGGTCTCAATCCGAGAAAGTGGCANATATAT--TTG 440 consensus_9489#2 AAATACACCACACTAGTTGATCACTAGTT--GATTCAAGTTAACAGCAACCAAGCGACTG 345 * * * ** * ** ** * ** ** * ** * *** * ** consensus_9489#0 AAACAACTGTGTATGACCGCCAATCACTCATGAATCTATTCACGTGGACTGTTTCCCGTA 527 consensus_9489#1 AAA--------------------------------------------------------- 443 consensus_9489#2 AACTA------------------------------------------------------- 350 ** consensus_9489#0 TCACTCAGTCTCAAAGTAAATCAGGATTTTCATTCGGTAAAAAGGATGTTCGGTGAAAGA 587 consensus_9489#1 ------------------------------------------------------------ consensus_9489#2 ------------------------------------------------------------ consensus_9489#0 AGAACTCTCAACGAACTCAAAGAAATTGCAAGCATCATTATTATGTGATGGAAAATTTTA 647 consensus_9489#1 ------------------------------------------------------------ consensus_9489#2 ------------------------------------------------------------ consensus_9489#0 AAAAGAAACATATTCTCTCCCATATATATATTGAAATACAAAACAACTAAATTGTAAAGA 707 consensus_9489#1 ------------------------------------------------------------ consensus_9489#2 ------------------------------------------------------------ consensus_9489#0 AAGCTCATTGTTTCCAACCATCTGTTTATGACTAACCTTTTGAATACTATTATTGTTATT 767 consensus_9489#1 ------------------------------------------------------------ consensus_9489#2 ------------------------------------------------------------ consensus_9489#0 ATTATTATTATTACTGAATAGAATAATCTCTTATTATTATTATGACTAACCTTAACCTAA 827 consensus_9489#1 ------------------------------------------------------------ consensus_9489#2 ------------------------------------------------------------ consensus_9489#0 GTAAAATTTGCCACTTTTTTTTTCTCCCTGGGTAATAA 865 consensus_9489#1 -------------------------------------- consensus_9489#2 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||