cluster # 949

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Schistosoma mansoni
cluster # 949 cluster # 949 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_949#0 length = 267 sequences # 1

consensus_949#1 length = 205 sequences # 1

consensusID : consensus_949#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence

                              [GGCGGTGGCGTAACCAATGGCTACTAAGAAGACGAGTTGGGACTGACTGGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGCTCGAAAGGCAAGAAGGCGAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGATGTGGGTGGAAAGGTTGATGTTCCCAGTGTGAAGGTCGATGTGGACTCAGGTGATCGAGTCAAAGGTAAGAAGTTCCACTGG]

[+] EMBL CD126966             [GGCGGTGGCGTAACCAATGGCTACTAAGAAGACGAGTTGGGACTGACTGGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGCTCGAAAGGCAAGAAGGCGAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGATGTGGGTGGAAAGGTTGATGTTCCCAGTGTGAAGGTCGATGTGGACTCAGGTGATCGAGTCAAAGGTAAGAAGTTCCACTGG]




>consensus_949#0
GGCGGTGGCGTAACCAATGGCTACTAAGAAGACGAGTTGGGACTGACTGGGAAGGTTTGT
TCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGCTCG
AAAGGCAAGAAGGCGAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGT
TTGGATGTGGGTGGAAAGGTTGATGTTCCCAGTGTGAAGGTCGATGTGGACTCAGGTGAT
CGAGTCAAAGGTAAGAAGTTCCACTGG

consensusID : consensus_949#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 205
fasta sequence

                              [AACACCATAGCCACCACCGTAATTACCACAATCTCCACCATTGCAATCACCACCATAGCCACCACCGTAATTACCACAATCTCCACCACTGCAACCTCCACCATAGCCACCACCATAGCCGCCGCCACAGTCATGTGATGTGGTGTGGGCGATAGCGTAACCAATGGCTACTAAGAAGACGAGTGTGAGTGACTGTTTCATTTTT]

[+] EMBL CD126667             [AACACCATAGCCACCACCGTAATTACCACAATCTCCACCATTGCAATCACCACCATAGCCACCACCGTAATTACCACAATCTCCACCACTGCAACCTCCACCATAGCCACCACCATAGCCGCCGCCACAGTCATGTGATGTGGTGTGGGCGATAGCGTAACCAATGGCTACTAAGAAGACGAGTGTGAGTGACTGTTTCATTTTT]




>consensus_949#1
AACACCATAGCCACCACCGTAATTACCACAATCTCCACCATTGCAATCACCACCATAGCC
ACCACCGTAATTACCACAATCTCCACCACTGCAACCTCCACCATAGCCACCACCATAGCC
GCCGCCACAGTCATGTGATGTGGTGTGGGCGATAGCGTAACCAATGGCTACTAAGAAGAC
GAGTGTGAGTGACTGTTTCATTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_949#0      GGCGGTGGCGTAACCAATGGCTACTAAGAAGACGAGTTGGGACTGACTGGGAAGGTTTGT 60
consensus_949#1      --------------------------------------------------AACACCATAG 10
                                                                        *     *  

consensus_949#0      TCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGCTCG 120
consensus_949#1      CCACC-ACCGTAATTACCACAATCTCCACCATTGCAATCACCACCATAGCCACCACCGTA 69
                      ****    ***  *  **   *  *  * *     *    **** * *       *   

consensus_949#0      AAAGGCAAGAAGGCGAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGT 180
consensus_949#1      ATTACCACAATCTCCACCACTGCAA---CCTCCACCATAGCCACCACCATAGCCGCCGCC 126
                     *    **  *   * *  *  *  *      ****  *  *      * * *  ** *  

consensus_949#0      TTGGATGTGGGTGGAAAGGTTGATGTTCCCAGTGTGAAGGTCGATGTGGACTCAGGTGAT 240
consensus_949#1      ACAGTCATGTGATGTGGTGTGGGCGAT---AGCGTAA---CCAATGGCTACTAAGAAGA- 179
                        *   ** *  *    ** *  * *   ** ** *    * ***   *** **  ** 

consensus_949#0      CGAGTCAAAGGTAAGAAGTTCCACTGG- 267
consensus_949#1      CGAGTGTGAGTGAC--TGTTTCATTTTT 205
                     *****   **  *    *** ** *