These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence [CCCTCCGAGGCCAANAATTCGGCACGAGGGTTGCTTACTTGAATTCTTCTACTGTATAAACGACTTATAATGTCTATTTGTTTTGTAAAACAGATATTATGAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT] [+] EMBL CD082031 [CCCTCCGAGGCCAANAATTCGGCACGAGGGTTGCTTACTTGAATTCTTCTACTGTATAAACGACTTATAATGTCTATTTGTTTTGTAAAACAGATATTATGAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAAC ] [-] EMBL CD075644 [ TAAACGACTTATAATGTCTATNTGTTTTGTAAAACAGATATTATGAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT] consensusID : consensus_9493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 682 fasta sequence [CCGAGGCCANAATTCGGCACGAGGGTCGAGCGACGTTTGAGGACAGTCTCACTGGTTAGGTTTGAGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGG-CCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT] [+] EMBL CD080426 [CCGAGGCCANAATTCGGCACGAGGGTCGAGCGACGTTTGAGGACAGTCTCACTGGTTAGGTTTGAGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGG CCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGGTCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT] [+] EMBL CD080418 [CCGAGGCCANAATTCGGCACGA GGTCGAGCGACGTTTGAGGACAGTCTCACTGGTTAGGTTTGAGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGG CCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCTTTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACTTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTNTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAAC ] [-] EMBL CD074510 [ CGAGCGACGTTTGAGGACAGTCTCACTGGTTAGGTTTGAGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGG CCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCTTTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACTTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT] [-] EMBL CD074332 [ CGTTTGAGGACAGTCTCACTGGTTAGGTTTGAGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGG CCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCTTTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACTTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT] [-] EMBL CD074518 [ GGTTTGAGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGG CCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTTTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT] [-] EMBL CD074339 [ AGGGTTAGGGTTAGGAATCCGGATATTATGAAAATATAGCCATCGTCGGCCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAACCCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTATTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGATTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCCAGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATGGCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCACCAATCGATTATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGCCAATCCACAAGTTGACAAAAGTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATTAATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT] consensusID : consensus_9493#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 438 fasta sequence [ATAACAGATAAGTGGGTTTTCGCAAATAATATAATATTTCCTTTCCTAGTTGCTTACTTGAATTCTTTTACTGTATAAACGACTTATAATGTCTATTTGTTTTGTAAAACAGATATTATGAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTTTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGGTAAGTAACAGCCCAAATATTCATTTAGTTACCCACCATTCTGTCGTCAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATC] [-] EMBL CD193362 [ATAACAGATAAGTGGGTTTTCGCAAATAATATAATATTTCCTTTCCTAGTTGCTTACTTGAATTCTTTTACTGTATAAACGACTTATAATGTCTATTTGTTTTGTAAAACAGATATTATGAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTTTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGGTAAGTAACAGCCCAAATATTCATTTAGTTACCCACCATTCTGTCGTCAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATC] [-] EMBL CD193369 [ GAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACATTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATACTGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCAAGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGGTAAGTAACAGCCCAAATATTCATTTAGTTACCCACCATTCTGTCGTCAGCGACTAAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9493#0 ------------------CCCTCCGAGGCCAANAA-TTCGGCACGAGGGTTGCTTACTTG 41 consensus_9493#1 ----------------------CCGAGGCCANAA--TTCGGCACGAGGGTCG---AGCGA 33 consensus_9493#2 ATAACAGATAAGTGGGTTTTCGCAAATAATATAATATTTCCTTTCCTAGTTGCTTACTTG 60 * * * * ** ** * * consensus_9493#0 AATTCTTCTACTGTATAAACGACTTATAATGTCTATTTGTTTTGTAAAAC-AGATATTAT 100 consensus_9493#1 CGTTTGAGGACAGTCTCACTGGTTAGGTTTGAGGGTTAGGGTTAGGAATCCGGATATTAT 93 consensus_9493#2 AATTCTTTTACTGTATAAACGACTTATAATGTCTATTTGTTTTGTAAAAC-AGATATTAT 119 ** ** ** * * * * ** ** * ** ** * ******** consensus_9493#0 GAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACA 160 consensus_9493#1 GAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACA 153 consensus_9493#2 GAAAATATAGCCATCGTCGGCCTATTTGTTTGACTTTTGTTATTGAAACTAGTCGATACA 179 ************************************************************ consensus_9493#0 TTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATAC 220 consensus_9493#1 TTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATAC 213 consensus_9493#2 TTTATGCATTCAAATAAATTTTGTCGTAGTCAGTAAGCTAATCCATGCAACCTTCAATAC 239 ************************************************************ consensus_9493#0 TGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCA 280 consensus_9493#1 TGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCA 273 consensus_9493#2 TGAGGAATGTACAAACCTTATCATGGAAACCTTTCTGCCAGCTACCGCTTCCAGTCCGCA 299 ************************************************************ consensus_9493#0 AGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAA 340 consensus_9493#1 AGTGCTCTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAGCGACTAAAACAAA 333 consensus_9493#2 AGTGCTTTACTAAGCATCTATTATTTTTAACTGAAAATTCTATACAG--------GTAAG 351 ****** **************************************** ** consensus_9493#0 TCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCC 400 consensus_9493#1 TCGAAGCAAAGGGATTTCTTATGAGAATCCTAGTGGATAGTGGAGGATGTTCGGGATTCC 393 consensus_9493#2 TAACAGCCCAAATATTCATT--TAGTTACCCACCATTCTGT------CGTCAGCGACT-- 401 * *** * *** ** ** ** * ** ** * ** * consensus_9493#0 AGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATG 460 consensus_9493#1 AGTATAAATTTCAACTTGTAGATAAAATTCAAGAAACCGACAAAGTAGTCAAACAAGATG 453 consensus_9493#2 AAAACAAATCGAAGCAAAGGGATTTCTTATGAGAATC----------------------- 438 * * **** * * *** * **** * consensus_9493#0 GCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATT 520 consensus_9493#1 GCGTCGTTGTAGTTGTTGACGATGTCTCGCTCGAATTTATCAAGGGTTCAACAATCGATT 513 consensus_9493#2 ------------------------------------------------------------ consensus_9493#0 ATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAA 580 consensus_9493#1 ATGAAGATGAATTGATTCGATCTGGTTTCTGTGTTGTTGACAATCCACAAGTTGACAAAA 573 consensus_9493#2 ------------------------------------------------------------ consensus_9493#0 GTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATT 640 consensus_9493#1 GTTGCTCTTGCGGTGTTTCATTCAGTACTAAACTTGACTAACTAAACTGTTTTCTTAATT 633 consensus_9493#2 ------------------------------------------------------------ consensus_9493#0 AATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT 689 consensus_9493#1 AATCAACGTTTTTGTCTAGTACTTGTAAATTGTTCCGAATATAGTAACT 682 consensus_9493#2 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||