cluster # 9494

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Schistosoma mansoni
cluster # 9494 cluster # 9494 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9494#0 length = 884 sequences # 5

consensus_9494#1 length = 552 sequences # 4
consensus_9494#2 length = 348 sequences # 1

consensusID : consensus_9494#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 884
fasta sequence

                              [CTTTTTTTTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAATAGATTATTTAAGAAGGCAAAAAGTAACCTAACATCTGGCTCGGGATCAGGTGGGTTCCAGATAACTCTAACAAAAGATAGTGTCGTAAGTTGCGGATCGCAATAATCGGATAGCCAAAAGCTGGATGTCTCACAAGGAAACGCAGAATACGAAAGCGAAAAAAAGATCGAACAGGAGAAGAAAGAGAAAACAGTTGGGATTTTGCCTATTTGGCCAAACTGTTCTTGATGCTGCCGGTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCATCAGCATCATGAAAGCGAACGAAAAAAAAACAAAGAAGAACTGGAAATAAAGAAGAAAACGTTGGCTGACCCATTAACAGAAATGAAGAAGGTTGAGGAGATGTTCAAACGCAGTAAGGAACTAAAAAGACAGAGCGAAGCAGCTGAACTCGAACGTGCCAGTGCTTGCATTCATGCTATGCCAAAC-TTATTTCCTGATGACATAATGGTACCAAAGTGCCCATACAAAGAGGCTTCGAAAAGTCGGCGAACAGGAAGTAGGTATAGTCAATCACTTACTGAAACTTCGTGTAATTCATTTGGGGAGCTAACGAAAGATTTATCCACAGAGGTTTCTCTGAGTCCCGAAAGTATGGATAAAAAATCACATTTGATTGAAATGGCCAAGAGCTCAGACATTAATCGTCTTCGAGCTGAG]

[+] EMBL CD187423             [CTTTTTTTTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAATAGATTATTTAAGAAGGCAAAAAGTAACCTAACATCTGGCTCGGGATCAGGTGGGTTCCAGATAACTCTAACAAAAGATAGTGTCGTAAGTTGCGGATCGCAATAATCGGATAGCCAAAAGCTGGATGTCTCACAAGGAAACGCAGAATACGAAAGCGAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD185415             [                  ATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACC AAAAAAAGAT GCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCCCGCTGATCAGGAAGCACGAATAGATTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD162346             [                                                                                                                                                                                                                                                                                           TGCGGATCGCAATAATCGGATAGCCAAAAGCTGGATGTCTCACAAGGAAACGCAGAATACGAAAGTGAAAAGAAGATCGAACAGGAGAAGAAAGAGAAAACAGTTGGGATTTTGCCTATTTGGCCAAACTGTTCTTGATGCTGCCGGTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCATCAGCATCATGAAAGCGAACGAAAAAAAAACAAAGAAGAACTGGAAATAAAGAAGAAAACGTTGGCTGACCCATTAACAGAAATGAAGAAGGTTGAGGAGATGTTC AACGCAGTAAGGAACTAAAAAGACAGAGCGAAGCAGCTGAACTCGAACGTGCCAGTGCTTGCATTCATGCTATGCCANACTTTATTTCCTGATGACATAATGGTACCA                                                                                                                                                                                                            ]
[-] EMBL CD071283             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAGCGAACGAAAAAAAAACAAAGAAGAACTGGAAATAAAGAAGAAAACGTTGGCTGACCCATTAACAGAAATGAAGAAGGTTGAGGAGATGTTCAAACGCAGTAAGGAACTAAAAAGACAGAGCGAAGCAGCTGAACTCGAACGTGCCAGTGCTTGCATTCATGCTATGCCAAAC TTATTTCCTGATGACATAATGGTACCAAAGTGCCCATACAAAGAGGCTTCGAAAAGTCGGCGAACAGGAAGTAGGTATAGTCAATCACTTACTGAAACTTCGTGTAATTCATTTGGGGAGCTAACGAAAGATTTATCCACAGAGGTTTCTCTGAGTCCCGAAAGTATGGATAAAAAATCACATTTGATTGAAATGGCCAAGAGCTCAGACATTAATCGTCTTCGAGCTGAG]
[-] EMBL CD071255             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGCGAACGAAAAAAAAACAAAGAAGAACTGGAAATAAAGAAGAAAACGTTGGCTGACCCATTAACAGAAATGAAGAAGGTTGAGGAGATGTTCAAACGCAGTAAGGAACTAAAAAGACAGAGCGAAGCAGCTGAACTCGAACGTGCCAGTGCTTGCATTCATGCTATGCCAAAC TTATTTCCTGATGACATAATGGTACCAAAGTGCCCATACAAAGAGGCTTCGAAAAGTCGGCGAACAGGAAGTAGGTATTGTCAATCACTTACTGAAACTTCGTGTAATTCATTTGGGGAGCTAACGAAAGGTTNATCCACAGAGGTTTCTCTGAGTCCCGAAAGTATGGATAAAAAATCACATTTGATTGAAATGGCCAAGAGCTCAGACATTAATCGTCTTCGAGCTGAG]




>consensus_9494#0
CTTTTTTTTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATA
TCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAG
ATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATC
AGGAAGCACGAATAGATTATTTAAGAAGGCAAAAAGTAACCTAACATCTGGCTCGGGATC
AGGTGGGTTCCAGATAACTCTAACAAAAGATAGTGTCGTAAGTTGCGGATCGCAATAATC
GGATAGCCAAAAGCTGGATGTCTCACAAGGAAACGCAGAATACGAAAGCGAAAAAAAGAT
CGAACAGGAGAAGAAAGAGAAAACAGTTGGGATTTTGCCTATTTGGCCAAACTGTTCTTG
ATGCTGCCGGTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCATCAGCATCATGAAA
GCGAACGAAAAAAAAACAAAGAAGAACTGGAAATAAAGAAGAAAACGTTGGCTGACCCAT
TAACAGAAATGAAGAAGGTTGAGGAGATGTTCAAACGCAGTAAGGAACTAAAAAGACAGA
GCGAAGCAGCTGAACTCGAACGTGCCAGTGCTTGCATTCATGCTATGCCAAACTTATTTC
CTGATGACATAATGGTACCAAAGTGCCCATACAAAGAGGCTTCGAAAAGTCGGCGAACAG
GAAGTAGGTATAGTCAATCACTTACTGAAACTTCGTGTAATTCATTTGGGGAGCTAACGA
AAGATTTATCCACAGAGGTTTCTCTGAGTCCCGAAAGTATGGATAAAAAATCACATTTGA
TTGAAATGGCCAAGAGCTCAGACATTAATCGTCTTCGAGCTGAG

consensusID : consensus_9494#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 552
fasta sequence

                              [TTATTTACCTTGCCGTCTACAACGCCTCTTATTTTCAGCCAGGAAGTGTTTACCAGTTATACAATCACAAAAAATTGGGTCAATTTGAAGGATTACTGGTCTGAGGATTATCCAGTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAATAGATTATTTAAGAAGGCAAAAAAGTAACCTAACATCTGGTTCGGGATCAGATGGGTTCCAGATAACTCTAACAAAAGATAGTGTCCTGGATGTCTCACAAGGAAACGCAGAATACGAAAGCGAAAAGAAGATCGAACAGGAGAAGAAAGAGAAAACAGTTGGGATTTTGACCTATTTAGGCCAAACTGTTCTTGATGCTGCCGGTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCATCAGCATCATGA]

[+] EMBL CD195434             [TTATTTACCTTGCCGTCTACAACGCCTCTTATTTTCAGCCAGGAAGTGTTTACCAGTTATACAATCACTAAAAATTGGGTCAATTTGAAGGATTACTGGTCTGAGGATTATCCAGTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAA                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD185241             [                                            AGTGTTTACCAGTTATACAATCACAAAAAATTGGGTCAATTTGAAGGATTACTGGTCTGAGGATTATCCAGTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAATAGATTAT                                                                                                                                                                                                                                                     ]
[+] EMBL CD133749             [                                            AGTGTTTACCAGTTATACAATCACAAAAAATTGGGTCAATTTGAAGGATTACTGGTCTGAGGATTATCCAGTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCGCAGCTCGCTGATCAGGAAGCACGAATAGATTAT                                                                                                                                                                                                                                                     ]
[+] EMBL CD185198             [                                                                                                                            AATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGACAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAATAGATTATTTAAGAAGGCAAAAAAGTAACCTAACATCTGGTTCGGGATCAGATGGGTTCCAGATAACTCTAACAAAAGATAGTGTCCTGGATGTCTCACAAGGAAACGCAGAATACGAAAGCGAAAAGAAGATCGAACAGGAGAAGAAAGAGAAAACAGTTGGGATTTTGACCTATTTAGGCCAAACTGTTCTTGATGCTGCCGGTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCATCAGCATCATGA]




>consensus_9494#1
TTATTTACCTTGCCGTCTACAACGCCTCTTATTTTCAGCCAGGAAGTGTTTACCAGTTAT
ACAATCACAAAAAATTGGGTCAATTTGAAGGATTACTGGTCTGAGGATTATCCAGTAGCA
AGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAA
AAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATA
TGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAAT
AGATTATTTAAGAAGGCAAAAAAGTAACCTAACATCTGGTTCGGGATCAGATGGGTTCCA
GATAACTCTAACAAAAGATAGTGTCCTGGATGTCTCACAAGGAAACGCAGAATACGAAAG
CGAAAAGAAGATCGAACAGGAGAAGAAAGAGAAAACAGTTGGGATTTTGACCTATTTAGG
CCAAACTGTTCTTGATGCTGCCGGTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCA
TCAGCATCATGA

consensusID : consensus_9494#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [AATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGTGTTTACCAGTTATACAATCACTAAAAATTGGGTCAATTTGAAGGATTACTGGAAGTCTGAGGATTATCCAGTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGAAGAT]

[+] EMBL CD191597             [AATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGTGTTTACCAGTTATACAATCACTAAAAATTGGGTCAATTTGAAGGATTACTGGAAGTCTGAGGATTATCCAGTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGAAGAT]




>consensus_9494#2
AATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGA
TGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATATGAG
GAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGTGTTTACCAGT
TATACAATCACTAAAAATTGGGTCAATTTGAAGGATTACTGGAAGTCTGAGGATTATCCA
GTAGCAAGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACC
AAAAAAAAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGAAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9494#0      ------------------------------------------------------------
consensus_9494#1      TTATTTACCTTGCCGTCTACAACGCCTCTTATTTTCAGCCAGGAAGTGTTTACCAGTTAT 60
consensus_9494#2      ------------------------------------------------------------
                                                                                  

consensus_9494#0      -----------------------------------------------CTTTTTTTTAGCA 13
consensus_9494#1      ACAATCACAAAAAATTGGGTCAATTTGAAGGATTACTGGTCTGAGGATTATCCAGTAGCA 120
consensus_9494#2      ------------------------------------------------------------
                                                                                  

consensus_9494#0      AGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAA 73
consensus_9494#1      AGATAATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAA 180
consensus_9494#2      ----AATTCACTTCGTGTTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAA 56
                          ********************************************************

consensus_9494#0      AAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATA 133
consensus_9494#1      AAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATA 240
consensus_9494#2      AAGATGGCATGTTTTGAAAAAAGAGAACATTGCTCGGGTGAGGTCAGATGAGGCAAAATA 116
                      ************************************************************

consensus_9494#0      TGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAAT 193
consensus_9494#1      TGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGCACGAAT 300
consensus_9494#2      TGAGGAGGAGCGAAGAAAAATTGAACTTAAAGCACAGCTCGCTGATCAGGAAGTGTTTAC 176
                      *****************************************************     * 

consensus_9494#0      AGATTATTTAAGAAGGCAAAAA-GTAACCTAACATCTGGCTCGGGATCAGGTGGGTTCCA 252
consensus_9494#1      AGATTATTTAAGAAGGCAAAAAAGTAACCTAACATCTGGTTCGGGATCAGATGGGTTCCA 360
consensus_9494#2      CAGTTATACAATCA--CTAAAAATTGGGTCAATTTGAAG---GATTACTGGAAGTCTGAG 231
                         ****  **  *  * ****  *     **  *   *   *    * *   *  *   

consensus_9494#0      GATAACTCTAACAAAAGATAGTGTCGTAAGTTGCGGATCGCAATAATCGGATAGCCAAAA 312
consensus_9494#1      GATAACTCTAACAAAAGATAGTGTC----------------------------------- 385
consensus_9494#2      GATTATCCAGTAGCAAGATAATTCACTTCGT----------------------------G 263
                      *** *  *      ****** *                                      

consensus_9494#0      GCTGGATGTCTCACAAGGAAACGCAGAATACGAAAGCGAAAAAAAGATCGAACAGGA-GA 371
consensus_9494#1      -CTGGATGTCTCACAAGGAAACGCAGAATACGAAAGCGAAAAGAAGATCGAACAGGA-GA 443
consensus_9494#2      TTTGAGTATCTCACTCCAAAACAATGAATATCTTACCAAAAAAAAGATGGCATGTTTTGA 323
                        **  * ******    ****   *****    * * **** ***** * *      **

consensus_9494#0      AGAAAGAGAAAACAGTTGGGATTTTG-CCTATTT-GGCCAAACTGTTCTTGATGCTGCCG 429
consensus_9494#1      AGAAAGAGAAAACAGTTGGGATTTTGACCTATTTAGGCCAAACTGTTCTTGATGCTGCCG 503
consensus_9494#2      AAAAAGAGAACATTGCTCGGAAGAT----------------------------------- 348
                      * ******** *  * * ***   *                                   

consensus_9494#0      GTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCATCAGCATCATGAAAGCGAACGAA 489
consensus_9494#1      GTGAAAAGCCGTGGTATGATGTGCACCCTCGAACCCATCAGCATCATGA----------- 552
consensus_9494#2      ------------------------------------------------------------
                                                                                  

consensus_9494#0      AAAAAAACAAAGAAGAACTGGAAATAAAGAAGAAAACGTTGGCTGACCCATTAACAGAAA 549
consensus_9494#1      ------------------------------------------------------------
consensus_9494#2      ------------------------------------------------------------
                                                                                  

consensus_9494#0      TGAAGAAGGTTGAGGAGATGTTCAAACGCAGTAAGGAACTAAAAAGACAGAGCGAAGCAG 609
consensus_9494#1      ------------------------------------------------------------
consensus_9494#2      ------------------------------------------------------------
                                                                                  

consensus_9494#0      CTGAACTCGAACGTGCCAGTGCTTGCATTCATGCTATGCCAAACTTATTTCCTGATGACA 669
consensus_9494#1      ------------------------------------------------------------
consensus_9494#2      ------------------------------------------------------------
                                                                                  

consensus_9494#0      TAATGGTACCAAAGTGCCCATACAAAGAGGCTTCGAAAAGTCGGCGAACAGGAAGTAGGT 729
consensus_9494#1      ------------------------------------------------------------
consensus_9494#2      ------------------------------------------------------------
                                                                                  

consensus_9494#0      ATAGTCAATCACTTACTGAAACTTCGTGTAATTCATTTGGGGAGCTAACGAAAGATTTAT 789
consensus_9494#1      ------------------------------------------------------------
consensus_9494#2      ------------------------------------------------------------
                                                                                  

consensus_9494#0      CCACAGAGGTTTCTCTGAGTCCCGAAAGTATGGATAAAAAATCACATTTGATTGAAATGG 849
consensus_9494#1      ------------------------------------------------------------
consensus_9494#2      ------------------------------------------------------------
                                                                                  

consensus_9494#0      CCAAGAGCTCAGACATTAATCGTCTTCGAGCTGAG 884
consensus_9494#1      -----------------------------------
consensus_9494#2      -----------------------------------