These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1149 fasta sequence [GGAGGCGCTCCTTTGTGTTGGTTGCGTTGTTTGTCTCTTTTTTCTCAAAATACGGGTTAGTTTCATCTCCAGTGTTATTCAAATAACGTTTGTTTCCCTGATACATAAAACCCTGATCTTTTCCGATTACATAATCGCGATTCCCTCCTTGCATTACCAGTTCCAGTTGTAAATAATGAATTTTTCAAACGTGCCGAAAGAACTCTCCCATTTGAACGTGTTCTTAAGATGTGCTTCGGAACACTCGGCAAAAAATCCCACTATCACATACTACTGTCTGCTGCATGCATTTCAAAAAGGTTTAAGTATGACTCAAAAATCACCCCCTATCAAGGCATTTTTGACAACTCTCATGGATAAGTTAGAAGGACTAAAGAAAAGTAATTCAAACTGTGAAGAAATTACGAATGAAACTGTTGGGATTCCTTATGTTGAACAGTATGCTCTCAAGTTGTTTGATGCTGCTTACCAGAGGGATATAAATTCCGACTTCGGACCTGCTACTGTAAAATTATTTCTTTCAGCTGCTACGCTCTTAGACGTTGTTTCTGGAGTTGGAGAAGTAGGTGATGATATCGAAAAGACTAGAAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATACAAATAATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGCATACCTGAACAACCGCCTAATCCTGATCCATCTCCATCTGACTATAATATTACAACAAAAAAGTGGTTGAACGTAGAAAAAGATATCAAATGTGCATTGAGTGCATCAAATTACCAGGATAGAGAAACAACCGTGAAATACTTGAAGCAAGCGTTAAAATCACTTGGAGTTGATATCTAAATTTTAAAATGGTGTTTTAACTTTTAATTTACGATGCACAGATGTATTTTATAGTGATTGGAACATCATCCCTTTTATGTGATATTTTCTGAGAATTTATTTATTACTGGTATTTTAACAAGGTAAGCTACAAATATTATGATGGTTAGAAGAAAAAAAAAAAAAAAAAACATACCATCATGCTTGCAGCTGCATTA] [+] EMBL CD122948 [GGAGGCGCTCCTTTGTGTTGGTTGCGTTGTTTGTCTCTTTTTTCTCAAAATACGGGTTAGTTTCATCTCCAGTGTTATTCAAATAACGTTTGTTTCCCTGATACATAAAACCCTGATCTTTTCCGATTACATAATCGCGATTCCCTCCTTGCATTACCAGTTCCAGTTGTAAATAATGAATTTTTCAAACGTGCCGAAAGAACTCTCCCATTTGAACGTGTTCTTAAGATGTGCTTCGGAACACTCGGCAAAAAATCCCACTATCACATACTACTGTCTGCTGCATGCATTTCAAAAAGGTTTAAGTATGACTCAAAAATCACCCCCTATCAAGGCATTTTTGACAACTCTCATGGATAAGTTAGAAGGACTAAAGAAAAGTAATTCAAACTGTGAAGAAATTACCAATGAAGCTGATG ] [+] EMBL CD078959 [ TTTTTCTCAAAATACGGGTTAGTTTCATCTCCAGTGTTATTCAAATAACGTTTGTTTCCCTGATACATAAAACCCTGATCTTTTCCGATTACATAATCGCGATTCCCTCCTTGCATTACCAGTTCCAGTTGTAAATAATGAATTTTTCAAACGTGCCGAAAGAACTCTCCCATTTGAACGTGTTCTTAAGATGTGCTTCGGATCACTCGGCAAAAAATCCCACTATCACATACTACTGTCTGCTGCATGCATTTCAAAAAGGTTTAAGTATGACTCAAAAATCACCCCCTATCAAGGCATTTTTGACAACTCTCATGGATAAGTTAGAAGAACTAAAGAAAAGTAATTCAAACTGTGAAGAAATTACGAATGAAACTGTTGGGATTCCTTATGTTGAACAGTATGCTCTCAAGTTGTTTGATGCTGCTTACCAGAGGGATATAAATTCCGACTTCGGACCTGCTACTGTAAAATTATTTCTTTCAGCTGCTACGCTCTTAGACGTTGTTTCTGGAGTTGGAGAAGTAGGTGATGATATCGAANAGACTAGAAAGTATGCCANATGGAAGGCCGT ] [+] EMBL CD098187 [ TGTGAAGAAATTACGAATGAAACTGTTGGGATTCCTTATGTTGAACAGTATGCTCTCAAGTTGTTTGATGCTGCTTACCAGAGGGATATAAATTCCGACTTCGGACCTGCTACTGTAAAATTATTTCTTTCAGCTGCTACGCTCTTAGACGTTGTTTCTGGAGTTGGAGAAGTAGGTGATGATATCGAAAAGACTAGAAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATACAAATAATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGCATACCTGAGCAACCGCCTAATCCTGATCCATCTCCATCTGACTATNATATTACAACAAAAAAGTGGTTGAACGTAGAAAAAGATATCAAATGTG ] [-] EMBL AW017051 [ nAAGTAGGTGATGATATCGAAAAGACTAGAAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGAACTAACAGATACAAATAATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGCATACCTGAACAACCGCCTAATCCTGATCCATCTCCATCTGACTATAATATTACAACAAAAAAGTGGTTGAACGTAGAAAAAGATATCAAATGTGCATTGAGTGCATCAAATTACCAGGATAGAGAAACAACCGTGAAATACTTGAAGCAAGCGTTAAAATCACTTGGAGTTGATATCTAAATTTTAAAATGGTGTTTTAACTTTTAATTTACGATGCACAGATGTATTTTATAGTGATTGGAACATCATCCCTTTTATGTGATATTTTCTGAGAATTTATTTATTACTGGTATTTTAACAAGGTAAGCTACAAATATTATGAT ] [+] EMBL CD183444 [ AGTAGGTGATGATATCGAAAAGACTAGAAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATACAAATAATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGCATACCTGAACAACCGCCTAATCCTGATCCATCTCCATCTGACTATAATATTACAACAAAAAAGTGGTTGAACGTAGAAAAAGATATCAAATGTGCATTGAGTG ] [-] EMBL CD073413 [ AAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTTTGGACTAACAGATACAAATAATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGCATACCTGAACAACCGCCTAATCCTGATCCATCTCCATCTGACTATAATATTACAACAAAAAAGTGGTTGAACGTAGAAAAAGATATCAAATGTGCATTGAGTGCATCAAATTACCAGGATAGAGAAACAACCGTGAAATACTTGAAGCAAGCGTTAAAATCACTTGGAGTTGATATTTAAATTTTAAAATGGTGTTTTAACTTTTAATTTACGATGCACAGATGTATTTTATAGTGATTGGAACATCATCCCTTTTATGTGATATTTTCTGAGAATTTATTTATTACTGGTATTTTAACAAGGTAAGCTACAAATATTATGAT ] [+] EMBL CD120692 [ TGCTTACACCCCAAATATTTCTGGACTAACAGATACAAATAATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGC ] [+] EMBL CD133184 [ ATCCCCACCACTTGCATACCTGAACAACCGCCTAATCCTGATCCATCTCCATCTGACTATAATATTACAACAAAAAAGTGGTTGAACGTAGAAAAAGATATCAAATGTGCATTGAGTG ] [-] EMBL AI977516 [ AGTGCATCAAATTTCCAGGATAGAGGAACAACCGTGAAATTCTTGAAGCAAGCGTTAAAAACTCTTGGAGTTGATATCTAAATTTTAAAATGGTGTTTTAAATTTTAATTTACGATGCGCAGATGTATTTTATAGTGATTGGAACATCATCCCTTTTATGTGATATTTTCTAAGAATTTATTTATTACTGGTATTTTAACAAGGTAAGCTTCAAATATTCTGTTGGTTAGAAGAAAAAAAAAAAAAAAAAACATACCATCATGCTTGCAGCTGCATTA] consensusID : consensus_9497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [CAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGAGTTGGAGAAGTAGGTGATGATGTGAGCTATTATTTACTCATCCGGTGATATACTTTTTTTCTAATGCTAGATCGAAAAGACTAGAAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATA] [-] EMBL CD178450 [CAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGAGTTGGAGAAGTAGGTGATGATGTGAGCTATTATTTACTCATCCGGTGATATACTTTTTTTCTAATGCTAGATCGAAAAGACTAGAAAGTATGCCAAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGTCCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9497#0 GGAGGCGCTCCTTTGTGTTGGTTGCGTTGTTTGTCTCTTTTTTCTCAAAATACGGGTTAG 60 consensus_9497#1 ------------------------------------------------------------ consensus_9497#0 TTTCATCTCCAGTGTTATTCAAATAACGTTTGTTTCCCTGATACATAAAACCCTGATCTT 120 consensus_9497#1 ------------------------------------------------------------ consensus_9497#0 TTCCGATTACATAATCGCGATTCCCTCCTTGCATTACCAGTTCCAGTTGTAAATAATGAA 180 consensus_9497#1 ------------------------------------------------------------ consensus_9497#0 TTTTTCAAACGTGCCGAAAGAACTCTCCCATTTGAACGTGTTCTTAAGATGTGCTTCGGA 240 consensus_9497#1 ------------------------------------------------------------ consensus_9497#0 ACACTCGGCAAAAAATCCCACTATCACATACTACTGTCTGCTGCATGCATTTCAAAAAGG 300 consensus_9497#1 ------------------------------------------------------------ consensus_9497#0 TTTAAGTATGACTCAAAAATCACCCCCTATCAAGGCATTTTTGACAACTCTCATGGATAA 360 consensus_9497#1 ------------------------------------------------------------ consensus_9497#0 GTTAGAAGGACTAAAGAAAAGTAATTCAAACTGTGAAGAAATTACGAATGAAACTGTTGG 420 consensus_9497#1 -----------------------------------CAGCAAATGCTTG-AAGTCTGGCGA 24 ** ** * * * *** * consensus_9497#0 GATTCCTTATGTTGAACAGTATGCTCTCAAGTTGTTTGATGCTGCTTACCAGAGGGATAT 480 consensus_9497#1 AGTTCCAGTAGCTGGTCC---TATTCCTAACAC---CGAAGCTGCTTACACCCCAAATAT 78 **** * ** * * ** ** ** ********* **** consensus_9497#0 AAATTCCGACTTCGGACCTGCTACTG-TAAAATTATTTCTT-TCAGCTGCTACGCTCTTA 538 consensus_9497#1 ---TTCTGGAGTTGGAGAAGTAGGTGATGATGTGAGCTATTATTTACTCATCCGGTGATA 135 *** * * *** * ** * * * * * ** * ** * ** * ** consensus_9497#0 GACGTTGTTTCTGGAGTTGGAGAAGTAGGTGATGATATCGAAAAGACTAGAAAGTATGCC 598 consensus_9497#1 TACTTTTTTTCTAATGCTAG----------------ATCGAAAAGACTAGAAAGTATGCC 179 ** ** ***** * * * ************************ consensus_9497#0 AAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGT 658 consensus_9497#1 AAATGGAAGGCCGTTTACATCAGCAAATGCTTGAAGTCTGGCGAAGTTCCAGTAGCTGGT 239 ************************************************************ consensus_9497#0 CCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATACAAAT 718 consensus_9497#1 CCTATTCCTAACACCGAAGCTGCTTACACCCCAAATATTTCTGGACTAACAGATA----- 294 ******************************************************* consensus_9497#0 AATCCCTTCAATAATGAAACAAATCAACAACCTCATGAAATCCCCACCACTTGCATACCT 778 consensus_9497#1 ------------------------------------------------------------ consensus_9497#0 GAACAACCGCCTAATCCTGATCCATCTCCATCTGACTATAATATTACAACAAAAAAGTGG 838 consensus_9497#1 ------------------------------------------------------------ consensus_9497#0 TTGAACGTAGAAAAAGATATCAAATGTGCATTGAGTGCATCAAATTACCAGGATAGAGAA 898 consensus_9497#1 ------------------------------------------------------------ consensus_9497#0 ACAACCGTGAAATACTTGAAGCAAGCGTTAAAATCACTTGGAGTTGATATCTAAATTTTA 958 consensus_9497#1 ------------------------------------------------------------ consensus_9497#0 AAATGGTGTTTTAACTTTTAATTTACGATGCACAGATGTATTTTATAGTGATTGGAACAT 1018 consensus_9497#1 ------------------------------------------------------------ consensus_9497#0 CATCCCTTTTATGTGATATTTTCTGAGAATTTATTTATTACTGGTATTTTAACAAGGTAA 1078 consensus_9497#1 ------------------------------------------------------------ consensus_9497#0 GCTACAAATATTATGATGGTTAGAAGAAAAAAAAAAAAAAAAAACATACCATCATGCTTG 1138 consensus_9497#1 ------------------------------------------------------------ consensus_9497#0 CAGCTGCATTA 1149 consensus_9497#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||