These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [GCGACCTTACAGATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGAAATTATTAATGACGTCCATCTGGTGCGCAAAGATGAAAAAGTCGGGATGAGCGAAGCTACACTACTTGGAATGTTGAAAATTCATCCATTCACTAATGGCGACCTTACAGATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTGGTGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATAC] [+] EMBL CD113124 [GCGACCTTACAGATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGAAATTATTAATGACGTCCATCTGGTGCGCAAAGATGAAAAAGTCGGGATGAGCGAAGCTACACTACTTGGAATGTTGAAAATTCATCCATTCACTAATGGCGACCTTACAGATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTGGTGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATAC] consensusID : consensus_950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [AGAAACACTTGTCAGAGTTCGACAAGTGTTTTATCGTCAATGTAGACAATGTTCGTTCTAAGCAAATGCAACAAATCAGAATGGCGCTTCGAGGAAGTGCAGAGCTGGTGTTGGGGAAAAATACACTAATAAGGAAGGTCATTCAAAAACAAATGGGCCATGATACTACTTTGGAGAAACTTTTGCCGCATATTAAGGAAAACATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGA] [-] EMBL BG930375 [AGAAACACTTGTCAGAGTTCGACAAGTGTTTTATCGTCAATGTAGACAATGTTCGTTCTAAGCAAATGCAACAAATCAGAATGGCGCTTCGAGGAAGTGCAGAGCTGGTGTTGGGGAAAAATACACTAATAAGGAAGGTCATTCAAAAACAAATGGGCCATGATACTACTTTGGAGAAACTTTTGCCGCATATTAAGGAAAACATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_950#0 GCGACCTTACAGATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAG 60 consensus_950#1 -------------------------------------------AGAAACACTTGTCAGAG 17 ** *** * * ** consensus_950#0 CCGGTGCAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAG 120 consensus_950#1 TTCG-ACAAGTGTTTTAT----CGTCAATGTA-----GACAATGTTCGTTCTAAG--CAA 65 * ** * * ** **** ** * ** * **** * ** consensus_950#0 AGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTG 180 consensus_950#1 ATGCAACAAATCAGAATGGCGCTTCGAGGAAGTGCAGAGCTGGTGTT-GGGGAAAAAT-- 122 * *** * *** ** * * * ** * ***** *** consensus_950#0 AAATTATTAATGACGTCCATCTGGTGCGCAAAGATGAAAAAGTCGGGATGAGCGAAGCTA 240 consensus_950#1 ACACTAATAAGGAAGGTCATT-------CAAAAACAAATGGGCCATGAT----------- 164 * * ** *** ** * *** **** * ** * * *** consensus_950#0 CACTACTTGGAATGTTGAAAATTCATCCATTCACTAATGGCGACCTTACAGATATTCGTG 300 consensus_950#1 -ACTACTTTGGA----GAAACTTTTGCCGCATATTAAGGAAAAC-------ATATTCGTG 212 ******* * * **** ** ** * *** * ** ********* consensus_950#0 AAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTG 360 consensus_950#1 AAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTG 272 ************************************************************ consensus_950#0 GTGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAG 420 consensus_950#1 ATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAG 332 *********************************************************** consensus_950#0 CTCTTAGCATAC---------------------------- 432 consensus_950#1 CTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGA 372 ************ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||