cluster # 950

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Schistosoma mansoni
cluster # 950 cluster # 950 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_950#0 length = 432 sequences # 1

consensus_950#1 length = 372 sequences # 1

consensusID : consensus_950#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [GCGACCTTACAGATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGAAATTATTAATGACGTCCATCTGGTGCGCAAAGATGAAAAAGTCGGGATGAGCGAAGCTACACTACTTGGAATGTTGAAAATTCATCCATTCACTAATGGCGACCTTACAGATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTGGTGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATAC]

[+] EMBL CD113124             [GCGACCTTACAGATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGAAATTATTAATGACGTCCATCTGGTGCGCAAAGATGAAAAAGTCGGGATGAGCGAAGCTACACTACTTGGAATGTTGAAAATTCATCCATTCACTAATGGCGACCTTACAGATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTGGTGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATAC]




>consensus_950#0
GCGACCTTACAGATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAG
CCGGTGCAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAG
AGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTG
AAATTATTAATGACGTCCATCTGGTGCGCAAAGATGAAAAAGTCGGGATGAGCGAAGCTA
CACTACTTGGAATGTTGAAAATTCATCCATTCACTAATGGCGACCTTACAGATATTCGTG
AAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTG
GTGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAG
CTCTTAGCATAC

consensusID : consensus_950#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence

                              [AGAAACACTTGTCAGAGTTCGACAAGTGTTTTATCGTCAATGTAGACAATGTTCGTTCTAAGCAAATGCAACAAATCAGAATGGCGCTTCGAGGAAGTGCAGAGCTGGTGTTGGGGAAAAATACACTAATAAGGAAGGTCATTCAAAAACAAATGGGCCATGATACTACTTTGGAGAAACTTTTGCCGCATATTAAGGAAAACATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGA]

[-] EMBL BG930375             [AGAAACACTTGTCAGAGTTCGACAAGTGTTTTATCGTCAATGTAGACAATGTTCGTTCTAAGCAAATGCAACAAATCAGAATGGCGCTTCGAGGAAGTGCAGAGCTGGTGTTGGGGAAAAATACACTAATAAGGAAGGTCATTCAAAAACAAATGGGCCATGATACTACTTTGGAGAAACTTTTGCCGCATATTAAGGAAAACATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGA]




>consensus_950#1
AGAAACACTTGTCAGAGTTCGACAAGTGTTTTATCGTCAATGTAGACAATGTTCGTTCTA
AGCAAATGCAACAAATCAGAATGGCGCTTCGAGGAAGTGCAGAGCTGGTGTTGGGGAAAA
ATACACTAATAAGGAAGGTCATTCAAAAACAAATGGGCCATGATACTACTTTGGAGAAAC
TTTTGCCGCATATTAAGGAAAACATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGC
ACCAGCTAAAGCCGGTGCAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGG
TCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAG
GGGAGCAATTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_950#0      GCGACCTTACAGATATTCGTGAAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAG 60
consensus_950#1      -------------------------------------------AGAAACACTTGTCAGAG 17
                                                                 **  ***  *  * **

consensus_950#0      CCGGTGCAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAG 120
consensus_950#1      TTCG-ACAAGTGTTTTAT----CGTCAATGTA-----GACAATGTTCGTTCTAAG--CAA 65
                        *  **   * *  **     ****  **      *  **     * **** *  ** 

consensus_950#0      AGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTG 180
consensus_950#1      ATGCAACAAATCAGAATGGCGCTTCGAGGAAGTGCAGAGCTGGTGTT-GGGGAAAAAT-- 122
                     *    ***  *         ***   ** *     * *     ** * *****  ***  

consensus_950#0      AAATTATTAATGACGTCCATCTGGTGCGCAAAGATGAAAAAGTCGGGATGAGCGAAGCTA 240
consensus_950#1      ACACTAATAAGGAAGGTCATT-------CAAAAACAAATGGGCCATGAT----------- 164
                     * * ** *** ** *  ***        **** *  **   * *  ***           

consensus_950#0      CACTACTTGGAATGTTGAAAATTCATCCATTCACTAATGGCGACCTTACAGATATTCGTG 300
consensus_950#1      -ACTACTTTGGA----GAAACTTTTGCCGCATATTAAGGAAAAC-------ATATTCGTG 212
                      ******* * *    **** **   **    * *** *   **       *********

consensus_950#0      AAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTG 360
consensus_950#1      AAAAAATTTTGAAAAACCGTGTCGAGGCACCAGCTAAAGCCGGTGCAGTCGCTCCATGTG 272
                     ************************************************************

consensus_950#0      GTGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAG 420
consensus_950#1      ATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAG 332
                      ***********************************************************

consensus_950#0      CTCTTAGCATAC---------------------------- 432
consensus_950#1      CTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGA 372
                     ************