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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 803 fasta sequence
[AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCATTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTTTATGGCTCCACCTTCCATGCTTCCTGTAGCTCCGCCCACCGGTAGTCTCTCAAACAACTGGGTCAGTGGAACACATCACATGATACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGTTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCT]
[+] EMBL CD178613 [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCATTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTTTATGGCTCCACCTTCCATGCTTCCTGTAGCTCCGCCCACCGGTAGTCTCTCAAACAACTGGGTCAGTGGAACACATC ]
[+] EMBL CD178471 [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCGTTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTT ]
[+] EMBL CD178951 [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCGTTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTT ]
[+] EMBL CD179089 [AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGTTAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAACTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTGAATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCATTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTT ]
[+] EMBL CD078727 [ AAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCATTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTATCCCACCATCAGTGTACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTGCGTTCCCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTTTATGGCTCCACCTTCCATGCTTCCTGTAGCTCCGCCCACCGGTAGTCTCTCAAACAACTGGGTCAGTGGAACACACCACATGATACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGTTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCT]
consensusID : consensus_9503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 696 fasta sequence
[TACGAGGCCANAATTCGGCACGAGGCGGCACGAGGACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGGTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAGCAAATTACAAGACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTT-A-AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAATATACGTTTAAATAAAAAAAAAAAAAAAAAA]
[+] EMBL CD082517 [TACGAGGCCANAATTCGGCACGAGGCGGCACGAGGACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGGTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAGCAAATTACAAGACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTNTNTATGTGACTT ANAAAAAAAAGAAATCTTATTGAAGATAATTNTTGTACATAAATTATTTATTTTAGAACGAA ]
[-] EMBL CD076112 [ GGACACTGTTTTGATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAGCAAATTACAAGACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTTAA AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAAn ]
[-] EMBL CD073189 [ GATTCCTAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCGTTGGATTGATGTTCTTCAAATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAGCACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAGCAAATTACAAGACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTT A AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAA ]
[-] EMBL AI395139 [ AACGCAAATACCAAG CCGGAGGAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGGCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTT A AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAATATACGTTTAAATAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395274 [ AAGC AATTCCCAGGCCGGAGGAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGATAGTGATGACAGTAACCATACCGATATTAAAATCAGTGCTTTAAAGGTAGAAGACTCTTGTCCGACAACTAAGTCTTTGGCCCTTTCTTGTCAGCTAACTGCTGGGGCTTGTGGTATCTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCGCGTTGTGGACTTTTTATGTGACTT A AAAAAAAAGAAATCTTATTGAAGATAATTTTTGTACATAAATTATTTATTTTAGAACGAAATATACGTTTAAATAAAAAAAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9503#0 AGATAATTAAGAAAAACCGAACTAAACCTTCCTCTTCAATGGCATTTTACGATTCTGAGT 60
consensus_9503#1 ----------------------------------TACGAGGCCANAATTCGGCAC-GAGG 25
* * * * ** * ** * ***
consensus_9503#0 TAGAACGTGAATCTATTTTGAGGGAAAAGCGAGAACGTGAGGAAGAAGAGGAAGGCGGAA 120
consensus_9503#1 CGGCACGAGGACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGGTTTGA 85
* *** * * * ** * ** * ** * ** ** *
consensus_9503#0 CTCTAAAAGGATTAGAAAATACCCGTGGTTCTGATGATCCTAATGGTCCAATGACAACTG 180
consensus_9503#1 TTCCTA---GTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTG 142
** * * * * * * * * * * * * ** **** * **
consensus_9503#0 AATCTGAAGGAGAAAGACGGAAGAACAATATTCCCCCAACACCCCGAACAAATATGCTCA 240
consensus_9503#1 TATATGAACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTA--ATCG 200
** **** * * ** * *** **** * *** ** **
consensus_9503#0 TTCCACCTACCTCAGCTTTTGGACGTCGAGCTCCTGCGACATTTACCCCACCATCAGTGT 300
consensus_9503#1 GCATATTCGT-TGGATTGATGTTCTTCAAATGTATGAAAAAACTGTA--ATTGTCAA--- 254
* * * ** * ** * ** * * * * ***
consensus_9503#0 ACGCCCCTCCTTCATACATACCACCACCTACACAGGCTCTGGGGCATGCACCCAGCTCTG 360
consensus_9503#1 --ACTCAACCATCAAGCACA--AACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAG 310
* * ** *** ** * * ** * ** * ** * ** * ** *
consensus_9503#0 CGTTCTCAGTACGTCCAATAGTCACTCCTGTGAGCGGTTTTATGGCT-CCACCTTCCATG 419
consensus_9503#1 AAA---CAGAAGGGGAATTTAACGATGCAGATTGTGGCAGAACTGCTGTTGATATTAAAG 367
*** * * * * * * * * * ** * *** * * *
consensus_9503#0 CTTCCTGTAGCTCCGCCCACCGGTAGTCTCTCAAACAACTGGGTCAGTGGAACACATCAC 479
consensus_9503#1 CAAATTACAA----GACAGAAGAAAGTTTCCTAAGTGATGATGTGAAAAAAGAGTACGAT 423
* * * * * * *** ** ** * ** * * * *
consensus_9503#0 A-TGATACATCTTCCTCCCACAGCTTCGCTTCGGAAACAACAGGACACTGTTTTGATTCC 538
consensus_9503#1 AGTGATG------------ACAGTAACCATACCGATATTA-AAATCAGTGCTTTAA---- 466
* **** **** * * * ** * * * ** ** *** *
consensus_9503#0 TAGTCAAAACACAAGTCATAACGCAAAAAACCATACATCTCCACTTCAGTTTGTATATGA 598
consensus_9503#1 -AGGTAGAAGAC---TCTTGTCC--GACAACTAAGTCTTTGGGCCTTT-CTTGTCAGCTA 519
** * ** ** ** * * * *** * * * * * **** *
consensus_9503#0 ACCTTATGTAGTCGAGTTGTGTGGTCCTATGCCACCACTTTCAAGTAATCGGCATATTCG 658
consensus_9503#1 ACTGCTGGGGCTTGTGGTATTTCACCTGCTGTTTTTTTAGAAAGGTGTTTGCTAGAATCG 579
** * * * * * * * * ** * ** * * * * ***
consensus_9503#0 TTGGATTGATGTTCTTCA-AATGTATGAAAAAACTGTAATTGTCAAACTCAACCATCAAG 717
consensus_9503#1 CGTTGTGGACTTTTTATGTGACTTAAAAAAAAAGAAATCTTATTGAAGATAATTTTTGTA 639
* ** ** * * ** ****** ** * ** ** *
consensus_9503#0 CACAAACATCAGCAAATACTTCCGAAACCAAGCCTAAATCAGAAACAGAAGGGGAATTTA 777
consensus_9503#1 CATAAATTATTTATTTTAGAACGAAATATACGTTTAAATAAAAAAAAAAAAAAAAAA--- 696
** *** ** * ** * * ***** * *** * ** **
consensus_9503#0 ACGATGCAGATTGTGGCAGAACTGCT 803
consensus_9503#1 --------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||