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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9514#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 927 fasta sequence
[GAGCCAAGATTGCGGCACGAGGCCTGATCTTCGATTGCTGCTAG-AAAAAAAACGTTTAACAATTGAGGAACACAAAGAACTTCGTAGTCGGAGGCGTCGTCTGCAAAATAGAAAATACGCACGTAAATGTGCCAGCAAAAAGCAGTCCGAAGTGGAAAACTTAGCCACCCAGGTGG-AGGAAGAGGTCGTTGAAATTCAGGCTCTAAGAACCCAGTTATCACGGACCAACTTGGCAACAAAACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCAAATGTCTTCAGGCCTTGGCTTCCCTAGTACAAGTCCACCCGTACGTTTTTCATGTAACCCTCCTTGTCACTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACACAGCAGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCA-TTAAATACAGCACCCCGAATACCTATATCATGAATGGGAT-ATTTATTAGCTCATA-TCATGCATGTCTGAGTG-ACCCAGGATTTT-CA-TTTACTGTGATCAGNTA-TGCTNCCATGG--TTCTG-TNATTG-TCTATG-TAA-GCT-AAG-ATTGCGG-TTT-GCTCA-TTA-AAT--AAAC-AGT-TAAAACC]
[+] EMBL CD081361 [GAGCCAAGATTGCGGCACGAGGCCTGATCTTCGATTGCTGCTAG AAAAAAAACGTTTAACAATTGAGGAACACAAAGAACTTCGTAGTCGGAGGCGTCGTCTGCAAAATAGAAAATACGCACGTAAATGTGCCAGCAAAAAGCAGTCCGAAGTGGAAAACTTAGCCACCCAGGTGG AGGAAGAGGTCGTTGAAATTCAGGCTCTAAGAACCCAGTTATCACGGACCAACTTGGCAACAAAACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCAAATGTCTTCAGGCCTTGGCTTCCCTAGTACAAGTCCACCCGTACGTTTTTCATGTAACCCTCCTTGTCACTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACACAGCAGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCA TTAAATACAGCACCCCGAATACCTATATCATGAATGGGAT ATTTATTAGCTCATA TCATGCATGTCTGAGTG ACCCAGGATTTT CA TTTACTGTGATCAGNTA TGCTNCCATGG TTCTG TNATTG TCTATG TAA GCT AAG ATTGCGG TTT GCTCA TTA AAT AAAC AGT TAAA ]
[+] EMBL CD116183 [ TGATCTTCGATTGCTGCTAG AAAAAAAACGTTTAACAATTGAGGAACACAAAGAACTTCGTAGTCGGAGGCGTCGTCTGCAAAATAGAAAATACGCACGTAAATGTGCCAGCAAAAAGCAGTCCGAAGTGGAAAACTTAGCCACCCAGGTGG AGGAAGAGGTCGTTGAAATTCAGGTTCTAAGAACCCAGTTATCACGGACCAACTTGGCAACAAAACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCANATACCTACGGTTTCGCGAATGTCTTCAGGCCT ]
[+] EMBL CD116079 [ TGATCTTCGATTGCTGCTAG AAAAAAAACGTTTAACAATTGAGGAACACAAAGAACTTCGTAGTCGGAGGCGTCGTCTGCAAAATAGAAAATACGCACGTAAATGTGCCAGCAAAAAGCAGTCCGAAGTGGAAAACTTAGCCACCCAGGTGGCTGGAAGAGGTCGTTGAAATTCAGGCTCTAAGAACCCAGTTATCACGGACCAACTTGGCAACAAAACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCGAATGTCTTCAGGCCTTGGCT ]
[+] EMBL CD116060 [ TGATCTTCGATTGCTGCTAGAAAAAAAAACGTTTAACAATTGAGGAACACAAAGAACTTCGTAGTCGGAGGCGTCGTCTGCAAAATAGAAAATACGCACGTAAATGTGCCAGCAAAAAGCAGTCCGAAGTGGAAAACTTAGCCACCCAGGTGG AGGAAGAGGTCGTTGAAATTCAGGCTCTAAGAACCCAGTTATCACGGACCAACTTGGCAACAAAACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAGAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCANATACCTACGGTTTCGCANATGTCTTCAGGCCTTGGC ]
[+] EMBL CD161082 [ ATTCAGGCTCTAAGAACCCAGTTATCACGGACCAACTTGGCAATAAAACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCAAATGTCTTCAGGCCTTGGCTTCCCTAGTACAAGTCCACCCGTACGTTTTTCATGTAACCCTCCTTGTCACTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCT ]
[-] EMBL CD133087 [ CCAAATACGCNGCATAATGGAANTCAGGGAAAAGTGTCTCAATAATGAAAGTAATGGA TTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATACATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCAAATGTCTTCAGGCC ]
[-] EMBL CD075195 [ ACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCAAATGTCTTCAGGCCTTGGCTTCCCTAGTACAAGTCCACCCGTACGTTTTTCATGTAACCCTCCTTGTCACTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACACAGCAGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCAGTTAAATACAGCACCCCGAATACTAATATCATGAATGGAATAATTTATTAGCTCATATTCATGCATGTCTGAGTGAACCCAAGATTTTCCATTTTACTGTGATCAAGTATTGTTTCCATTGTTTTCTGTTCATTGTTCTATGTTAATGCTAAAGTTTTGTGGCTTTGGCTCATTTAGAATAAAAACAAGTATAAAACC]
consensusID : consensus_9514#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 393 fasta sequence
[TCCTTGTCACTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACACAGCAGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCAGTTAAATACAGCACCCCGAATACTAATATCATGAATGGAATAATTTATTAGCTCATATTCATGCATGTCTGAGTGAACCCAAGATTTTCCATTTTACTGTGATCAAGTATTGTTTCCATTGTTTTCTGTTCATTGTTCTATGTTAATGCTAAAGTTTTGTGGCTTTGGCTCATTTAGAATAAAAACAAGGTATAAACCCGTTTCTTTCAACCCCATGGTTTCAGCGCAAAAATGAAACTTTTACTACTTTGTTTAAAAAAAAAAAAAAAAA]
[-] EMBL BF936036 [TCCTTGTCACTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACACAGCAGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCAGTTAAATACAGCACCCCGAATACTAATATCATGAATGGAATAATTTATTAGCTCATATTCATGCATGTCTGAGTGAACCCAAGATTTTCCATTTTACTGTGATCAAGTATTGTTTCCATTGTTTTCTGTTCATTGTTCTATGTTAATGCTAAAGTTTTGTGGCTTTGGCTCATTTAGAATAAAAACAAGGTATAAACCCGTTTCTTTCAACCCCATGGTTTCAGCGCAAAAATGAAACTTTTAC ]
[-] EMBL AI395520 [ GGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCAGTTAAATACAGCACCCCGAATACTAATATCATGAATGGAATAATTTATTAGCTCATATTCATGCATGTCTGAGTGAACCCAAGATTTTCCATTTTACTGTGATCAAGTATTGTTTCCATTGTTTTCTGTTCATTGTTCTATGTTAATGCTAAAGTTTTGTGGCTTTGGCTCATTTAGAATAAAAACAA GTATAAAACCGTTTCTTTCAACCCCAT GTTTCAGCGCAAAAATGAAACTTTTACTACTTTGTTTAAAAAAAAAAAAAAAAA]
consensusID : consensus_9514#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence
[GGCCCCCCCCCAAAGGTCGACGGAATCAATAAGCTTGATTTCGAATTCAGGGAAAAGTGTCTCAATAATGAAAGAAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAC]
[-] EMBL BG930707 [GGCCCCCCCCCAAAGGTCGACGGAATCAATAAGCTTGATTTCGAATTCAGGGAAAAGTGTCTCAATAATGAAAGAAATGGATTTCAGATAAAGACAGTCCGCATGTTGGATTCTAACGGTCAACCTGCTGGATTTGCTTACATTAATTCGACGTTCTCTTCTAATTGTATGGGTCCTGAGATTCATAAAGTCATCCATCCAACAGATCAAAGTTGTGATGTCATAGGAATCGCAACTTGTTCAAAGCATAACCCTCTATCTTCAGGTTCCAATAAGTACAAATTTAGCCTAGAAGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9514#0 GAGCCAAGATTGCGGCACGAGGCCTGATCTTCGATTGCTGCTAGAAAAAAAACGTTTAAC 60
consensus_9514#2 ------------------------------------------------------------
consensus_9514#1 ------------------------------------------------------------
consensus_9514#0 AATTGAGGAACACAAAGAACTTCGTAGTCGGAGGCGTCGTCTGCAAAATAGAAAATACGC 120
consensus_9514#2 ------------------------------------------------------------
consensus_9514#1 ------------------------------------------------------------
consensus_9514#0 ACGTAAATGTGCCAGCAAAAAGCAGTCCGAAGTGGAAAACTTAGCCACCCAGGTGGAGGA 180
consensus_9514#2 ------------------------------------------------------------
consensus_9514#1 ------------------------------------------------------------
consensus_9514#0 AGAGGTCGTTGAAATTCAGGCTCTAAGAACCCAGTTATCACGGACCAACTTGGCAACAAA 240
consensus_9514#2 ----------------------------------------------GGCCCCCCCCCAAA 14
consensus_9514#1 --------------------------------------------TCCTTGTCACTTCAAA 16
* ****
consensus_9514#0 ACACTTGGAACACCAATTACGCCGCATAATGGAATTCAGGGAAAAGT-GTCTCAATAATG 299
consensus_9514#2 GGTCGACGGA-ATCAATAAGCTTGATT--TCGAATTCAGGGAAAAGT-GTCTCAATAATG 70
consensus_9514#1 AATCATCTT---CAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACACAGC 73
* *** * * * * *** * * *** *
consensus_9514#0 AAAGTAATGGATTTCAGATAAAGACAGTCCGCA-TGTTGGATTCTAACGGTCAA------ 352
consensus_9514#2 AAAGAAATGGATTTCAGATAAAGACAGTCCGCA-TGTTGGATTCTAACGGTCAA------ 123
consensus_9514#1 AGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCAGTTAAATACAG 133
* ** *** * *** *** * * *** * * ** **
consensus_9514#0 CCTGCTGGAT-TTGCTTACATTAATTCGACGTTCT-----CTTCTAATTGTATGGGTCCT 406
consensus_9514#2 CCTGCTGGAT-TTGCTTACATTAATTCGACGTTCT-----CTTCTAATTGTATGGGTCCT 177
consensus_9514#1 CACCCCGAATACTAATATCATGAATGGAATAATTTATTAGCTCATATTCATGCATGTCTG 193
* * * ** * * *** *** * * * ** ** * * ***
consensus_9514#0 GAGATTCATAAAGTCATCCATCCAACAG-ATCAAAGTTGTGATGTCATAGGAATC-GCAA 464
consensus_9514#2 GAGATTCATAAAGTCATCCATCCAACAG-ATCAAAGTTGTGATGTCATAGGAATC-GCAA 235
consensus_9514#1 AGTGAACCCAAGATTTTCCATTTTACTGTGATCAAGTATTGTTTCCATTGTTTTCTGTTC 253
* ** * ***** ** * **** ** * *** * ** *
consensus_9514#0 CTTGTTCAAAGCATAACCCTCTATCTTCAGGTTC-----CAATAAGTACAAATTTAGCCT 519
consensus_9514#2 CTTGTTCAAAGCATAACCCTCTATCTTCAGGTTC-----CAATAAGTACAAATTTAGCCT 290
consensus_9514#1 ATTGTTCTATGTTAATGCTAAAGTTTTGTGGCTTTGGCTCATTTAGAATAAAAACAAGGT 313
****** * * * * * ** ** * ** * ** * *** * *
consensus_9514#0 AGAAGAACACCCTTCCAACGTTTATCCACGTCAAATACCTACGGTTTCGCAAATGTCTTC 579
consensus_9514#2 AGAAGAC----------------------------------------------------- 297
consensus_9514#1 ATAAACCCGTTTCTTTCAACCCCATGGTTTCAGCGCAAAAATGAAACTTTTACTACTTTG 373
* **
consensus_9514#0 AGGCCTTGGCTTCCCTAGTACAAGTCCACCCGTACGTTTTTCATGTAACCCTCCTTGTCA 639
consensus_9514#2 ------------------------------------------------------------
consensus_9514#1 TTTAAAAAAAAAAAAAAAAA---------------------------------------- 393
consensus_9514#0 CTTCAAAAATCATCTTCAAATGCGTCTGGTTAGACCAGTCGGTGGAGGCTTCGCATCACA 699
consensus_9514#2 ------------------------------------------------------------
consensus_9514#1 ------------------------------------------------------------
consensus_9514#0 CAGCAGAGGCATGTCTGAATACTAATATCAGCTCTTACTGTCATTTCTCTTCATTAAATA 759
consensus_9514#2 ------------------------------------------------------------
consensus_9514#1 ------------------------------------------------------------
consensus_9514#0 CAGCACCCCGAATACCTATATCATGAATGGGATATTTATTAGCTCATATCATGCATGTCT 819
consensus_9514#2 ------------------------------------------------------------
consensus_9514#1 ------------------------------------------------------------
consensus_9514#0 GAGTGACCCAGGATTTTCATTTACTGTGATCAGNTATGCTNCCATGGTTCTGTNATTGTC 879
consensus_9514#2 ------------------------------------------------------------
consensus_9514#1 ------------------------------------------------------------
consensus_9514#0 TATGTAAGCTAAGATTGCGGTTTGCTCATTAAATAAACAGTTAAAACC 927
consensus_9514#2 ------------------------------------------------
consensus_9514#1 ------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||