cluster # 9517

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Schistosoma mansoni
cluster # 9517 cluster # 9517 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9517#0 length = 1097 sequences # 8

consensus_9517#1 length = 382 sequences # 1
consensus_9517#2 length = 231 sequences # 1

consensusID : consensus_9517#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1097
fasta sequence

                              [CACGTGTAAAGGTCCTATGGCTGGTATCTCATTGTCAACGGGACAAGTAGTTGTAACACTACACGTAGAGTAGACTTCACTGAAGTAGTTAGCAAATGTCTCCGCTTTCGCTAGATCAGATTCAGTCAATAAAGCTGAATTTTCGCTTAACAGTAATGAGGGGATACCATCACTACGTTTCGTCCGCCTTTTAACGTACGAAAACAGTCGCTTCGGACAATTACGGCTATCGTATGCCAACTGTCGTTCGTAAGCCGTGCGGGATTTAGCTATGGTCTTTTTACATACATTCCGGTTTTTATACTCGCACTTAAATGATGCCTGACCTGTTGACAAGAATAAGTCCCAGAAGTGTTTCCTACGCTTCAACAGCTTCCGGGTTTCCTTATTAATCCATGGAGGGCAATATGATAGCTTACGTGCTGACCATGGGATAAACGGTTGAGTTACGGATTCGAACGTAGACTTAAACCTATTCCATGCATCATCAATCGATCCATCAGCATCGACCGACCAGTCAATCGAGATAGCATAGTCCCTGATTGCCGGAATATTAGCTCTCCAGATATTAGGACGGGGTGGAGCAGATGCAAATTCTATACCATGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTATTCACCAGTGGGGGAAGGTGTTGAATGTCGACGATATCTTCACAGTGGTGTGTGAGGACAAGGTCTATCAATGACGGATTATGTTCCAAGTCTATATGCGTCGGCTTAACGATACATTGTACAAGTGCACATTGAATAATTGATGACAGAAGGACGCTATCGAAACCCCCACCTGGAGCTGTGAGCTC-TATCC-GTTTATGTGGGGTGCATTGAAGTCTCCAACGATGAGACAACATTCTGCTTTACTCCAAGAACAGACGTGTCTTAGGATAAAGTCGTCAGCGAGACAACACGGACTACGAAATATTCCTCCTATCGTCACTAACCCGTTTCTAGACCTAATTGTACAACATACTACCTCACACGTACCACTTACATGCGCCTCCGATATGATCGAGTTAATGCGGAAGTGGTCCCTAATATATAATATTATGCCTCCTCCCTTGAGACTTCT]

[+] EMBL CD094362             [CACGTGTAAAGGTCCTATGGCTGGTATCTCATTGTCAACGGGACAAGTAGTTGTAACACTACACGTAGAGTAGACTTCACTGAAGTAGTTAGCAAATGTCTCCGCTTTCGCTAGATCAGATTCAGTCAATAAAGCTGAATTTTCGCTTAACAGTAATGAGGGGATACCATCACTACGTTTCGTCCGCCTTTTAACGTACGAAAACAGTCGCTTCGGACAATTACGGCTATCGTATGCCAACTGTCGTTCGTAAGCCGTGCGGGATTTAGCTATGGTCTTTTTACATACATTCCGGTTTTTATACTCGCACTTAAATGATGCCTGACCTGTTGACAAGAATAAGTCCCAGAAGTGTTTCCTACGCTTCAACAGCTTCCGGGTTTCCTTATTAATCCATGGAGGGCAATATGATAGCTTACGTGCTGACCATGGGATAAACGGTTGAGTTACGGATTCGAACGTAGACTTAAACCTATTCCGTGCATCATCAATCGATCCATCAGCATCGACCGACCAGTCAATCGAGATAGCATAGTCCCTGATTGCCGGAATATTAGTTCTCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD148136             [                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTGAGTTACGGATTCGAACGTGGACTTAAACCTATTCCATGCATCATCAATCGATCCATCAGCATCGACCGACCAGTCAATTGAGATAGCATAGTCCCTGATTGCCGGAATATTAGCTCTCCAGATATTAGGACGGGGTGGAGCTGATGCAAATTCTATACCATGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTATTCACCAGTGGGGGAAGATGTTGAATGTCAACGATATCTTCACAGTGGTGTGTGAGGACAAGGTCTATCAATGAC                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD087142             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGAGTTACGGATTCGAACGTAGACTTGAACCTATTCCATGCATCATCAATCGATCCATCAGCATCGACCGACCAGTCAATTGAAATAGCATAGTCCCTGATTGCCGGAATATTAGCTCTCCATATATTAGGACGGGGTGGAACAGATGCAAATTCTCTACCGTGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTATTCACCAGTGGGGGCAGGTGTTGAATGTCNACGATATCTTCACAGTGGTGTGTGAGGACA                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD087141             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGAGTTACGGATTCGAACGTAGACTTGAACCTATTCCATGCATCATCAATCGATCCATCAGCATCGACCGACCAGTCAATTGAAATAGCATAGTCCCTGATTGCCGGAATATTAGCTCTCCATATATTAGGACGGGGTGGAACAGATGCAAATTCTATACCGTGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTATTCACCACTGGGGGCAGGTGTTGAATGTCGACGATATCT                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD197824             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCGATCCATCAGCATCGACCGACCAGTCAATCGAGATAGCATAGTCCCTGATTGCCGGAATATTAGCTCTCCAGATATTAGGACGGGGTGGAGCAGATGCAAATTCTATACCATGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTGTTCACCAGTGGGGGAAGGTGTTGAATGTCGACGATATCTTCACAGTGGTGTGTGAGGACAAGGTCTATCAATGACGGATTATGTTCCAAGTCTATATGCGTCGGCTTAACGATACATTGTACAAGTGCACATTGAATAATTGATGACAGAAGGACGCTATCGAAACCCCCANCTGGAGCTGTGAGCTCTTATCC GTTTATGTGGGGTGCATTGAAGTCTCCAACGATGAGACAACATTC                                                                                                                                                                                                                        ]
[-] EMBL CD061875             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tcggGATCCATCAGCATCGACCGACCAGTCAATCGAGATAGCATAGTCCCTGATTGCCGGAATATTAGCTCTCCAGATACTAGGACGGGGTGGAGCAGATGCAAATTCTATACCATGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTATTCACCAGTGGGGGAAGGTGTCGAATGTCGACGATATCTTCACAGTGGTGTGTGAGGACAAGGTCTATCAATGACGGATTATGTTCCAAGTCTATATGCGTCGGCTTAACGATACATTGTACAAGTGCACAT                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD197647             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTTGAATGTCGACGATATCTTCACAGTGGTGTGTGAGGACAAGGTCTATCAATGACGGATTATGTTCCAAGTCTATATGCGTCGGCTTAACGATACATTGTACAAGTGCACATTGAATAATTGATGACAGAAGGACGCTATCGAAACCCCCACCTGGAGCTGTGAGCTC TATCCAGTTTATGTGGGGTGCATTGAAGTCTCCAACGATGAGACAACATTCTGCTTTACTCCAAGAACAGACGTGTCTTAGGATAAAGTCGTCAGCGAGACAACACGGACTACGAAATATTCCTCCTATCGTCACTAACCCGTTTCTAGACCTAATTGTACAACATACTACCTCACACGTACCACTTACATGCGCCTCCGATATGATCGAGTT                                                      ]
[-] EMBL CD096943             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTGTGTGAGGACAAGGTCTATCAATGACGGATTATGTTCCAAGTCTATATGCGTCGGCTTAACGATACATTGTACAAGTGCACATTGAATAATTGATGACAGAAGGACGCTATCGAAACCCCCACCTGGAGCTGTGAGCTC TATCCAGTTTATATGGGGTGCATTGAAGTCTCCAACGTTGAGACAACATTCTGCTTTACTCCAAGAACAGACGTGTTTTAGGATAAAGTCGTCAGCGAGACAACACGGACTACGATATATTCCTCCTATCGTCACTAACCCGTTTCTAGACCTAATTGTACAACATACTACCTCACACGTACCACTTACATGCGCCTCCGATATGATCGAGTTAATGCGGAAGTGGTCCCTAATATATAATATTATGCCTCCTCCCTTGAGACTTCT]




>consensus_9517#0
CACGTGTAAAGGTCCTATGGCTGGTATCTCATTGTCAACGGGACAAGTAGTTGTAACACT
ACACGTAGAGTAGACTTCACTGAAGTAGTTAGCAAATGTCTCCGCTTTCGCTAGATCAGA
TTCAGTCAATAAAGCTGAATTTTCGCTTAACAGTAATGAGGGGATACCATCACTACGTTT
CGTCCGCCTTTTAACGTACGAAAACAGTCGCTTCGGACAATTACGGCTATCGTATGCCAA
CTGTCGTTCGTAAGCCGTGCGGGATTTAGCTATGGTCTTTTTACATACATTCCGGTTTTT
ATACTCGCACTTAAATGATGCCTGACCTGTTGACAAGAATAAGTCCCAGAAGTGTTTCCT
ACGCTTCAACAGCTTCCGGGTTTCCTTATTAATCCATGGAGGGCAATATGATAGCTTACG
TGCTGACCATGGGATAAACGGTTGAGTTACGGATTCGAACGTAGACTTAAACCTATTCCA
TGCATCATCAATCGATCCATCAGCATCGACCGACCAGTCAATCGAGATAGCATAGTCCCT
GATTGCCGGAATATTAGCTCTCCAGATATTAGGACGGGGTGGAGCAGATGCAAATTCTAT
ACCATGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTATTCACCAGTGGGGGAAG
GTGTTGAATGTCGACGATATCTTCACAGTGGTGTGTGAGGACAAGGTCTATCAATGACGG
ATTATGTTCCAAGTCTATATGCGTCGGCTTAACGATACATTGTACAAGTGCACATTGAAT
AATTGATGACAGAAGGACGCTATCGAAACCCCCACCTGGAGCTGTGAGCTCTATCCGTTT
ATGTGGGGTGCATTGAAGTCTCCAACGATGAGACAACATTCTGCTTTACTCCAAGAACAG
ACGTGTCTTAGGATAAAGTCGTCAGCGAGACAACACGGACTACGAAATATTCCTCCTATC
GTCACTAACCCGTTTCTAGACCTAATTGTACAACATACTACCTCACACGTACCACTTACA
TGCGCCTCCGATATGATCGAGTTAATGCGGAAGTGGTCCCTAATATATAATATTATGCCT
CCTCCCTTGAGACTTCT

consensusID : consensus_9517#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence

                              [TAAGTTAGTTATCNAAGGAAGAACAATATCCTCTGTAAACGTGTAAAGGTCCTATGGCTGGTATCTNATTGTNAACGGGACAAGTAGTTGTAACACCACACGTAGAGTAGACTTCACTGAAATAGTTAGCAAATGTATCCGCATTCGCAAGANCAGATTCAGCCAATAAAGCTGAATTTAACGCTTAACAGTAATGAAGGGATACCATCACTATGTTTCGTMCGCATTTAAACATACGAAAACAATCGCTTCGGACAGGTAGGACTATCGTATGCAAACTGTCGTACGTAAGCAGTGCGGGTTTTAGCTATGGTCTTTTAAACATTTTTTCCGGATTTTAATAATTTTCGCCCTTAAATGATGCCTGACCTGTTGNCAAGCC]

[+] EMBL AI764888             [TAAGTTAGTTATCNAAGGAAGAACAATATCCTCTGTAAACGTGTAAAGGTCCTATGGCTGGTATCTNATTGTNAACGGGACAAGTAGTTGTAACACCACACGTAGAGTAGACTTCACTGAAATAGTTAGCAAATGTATCCGCATTCGCAAGANCAGATTCAGCCAATAAAGCTGAATTTAACGCTTAACAGTAATGAAGGGATACCATCACTATGTTTCGTMCGCATTTAAACATACGAAAACAATCGCTTCGGACAGGTAGGACTATCGTATGCAAACTGTCGTACGTAAGCAGTGCGGGTTTTAGCTATGGTCTTTTAAACATTTTTTCCGGATTTTAATAATTTTCGCCCTTAAATGATGCCTGACCTGTTGNCAAGCC]




>consensus_9517#1
TAAGTTAGTTATCNAAGGAAGAACAATATCCTCTGTAAACGTGTAAAGGTCCTATGGCTG
GTATCTNATTGTNAACGGGACAAGTAGTTGTAACACCACACGTAGAGTAGACTTCACTGA
AATAGTTAGCAAATGTATCCGCATTCGCAAGANCAGATTCAGCCAATAAAGCTGAATTTA
ACGCTTAACAGTAATGAAGGGATACCATCACTATGTTTCGTMCGCATTTAAACATACGAA
AACAATCGCTTCGGACAGGTAGGACTATCGTATGCAAACTGTCGTACGTAAGCAGTGCGG
GTTTTAGCTATGGTCTTTTAAACATTTTTTCCGGATTTTAATAATTTTCGCCCTTAAATG
ATGCCTGACCTGTTGNCAAGCC

consensusID : consensus_9517#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence

                              [CCAGGTTGTGCACTGTACAAGTGCACATTGAATAATTGATGACAGAAGGACGCTATCGAAACCCCCACATGGAGCTCTGAGCTCTATCCAGTTTATATGGAGTGCATTGAAATCTCCAACGCATGAGACAACATTCTGCTTTACTCCAAGAACAGACGTGTTTTAGGATAAAGTCGTCAGAGAGACAACACGGACTACGATATATTCCTCCTATCGTCACTAACCCGTTTC]

[+] EMBL CD061359             [CCAGGTTGTGCACTGTACAAGTGCACATTGAATAATTGATGACAGAAGGACGCTATCGAAACCCCCACATGGAGCTCTGAGCTCTATCCAGTTTATATGGAGTGCATTGAAATCTCCAACGCATGAGACAACATTCTGCTTTACTCCAAGAACAGACGTGTTTTAGGATAAAGTCGTCAGAGAGACAACACGGACTACGATATATTCCTCCTATCGTCACTAACCCGTTTC]




>consensus_9517#2
CCAGGTTGTGCACTGTACAAGTGCACATTGAATAATTGATGACAGAAGGACGCTATCGAA
ACCCCCACATGGAGCTCTGAGCTCTATCCAGTTTATATGGAGTGCATTGAAATCTCCAAC
GCATGAGACAACATTCTGCTTTACTCCAAGAACAGACGTGTTTTAGGATAAAGTCGTCAG
AGAGACAACACGGACTACGATATATTCCTCCTATCGTCACTAACCCGTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9517#0      CACGTGTAAAGGTCCTATGGCTGGTATCTCATTGTCAACGGGACAAGTAGTTGTAACACT 60
consensus_9517#2      ------------------------------------------------------------
consensus_9517#1      ------------------------------------------------------------
                                                                                  

consensus_9517#0      ACACGTAGAGTAGACTTCACTGAAGTAGTTAGCAAATGTCTCCGCTTTCGCTAGATCAGA 120
consensus_9517#2      ------------------------------------------------------------
consensus_9517#1      ------------------------------------------------------------
                                                                                  

consensus_9517#0      TTCAGTCAATAAAGCTGAATTTTCGCTTAACAGTAATGAGGGGATACCATCACTACGTTT 180
consensus_9517#2      ------------------------------------------------------------
consensus_9517#1      ------------------------------------------------------------
                                                                                  

consensus_9517#0      CGTCCGCCTTTTAACGTACGAAAACAGTCGCTTCGGACAATTACGGCTATCGTATGCCAA 240
consensus_9517#2      ------------------------------------------------------------
consensus_9517#1      ------------------------------------------------------------
                                                                                  

consensus_9517#0      CTGTCGTTCGTAAGCCGTGCGGGATTTAGCTATGGTCTTTTTACATACATTCCGGTTTTT 300
consensus_9517#2      ------------------------------------------------------------
consensus_9517#1      ------------------------------------------------------------
                                                                                  

consensus_9517#0      ATACTCGCACTTAAATGATGCCTGACCTGTTGACAAGAATAAGTCCCAGAAGTGTTTCCT 360
consensus_9517#2      ------------------------------------------------------------
consensus_9517#1      ------------------------------------------------------------
                                                                                  

consensus_9517#0      ACGCTTCAACAGCTTCCGGGTTTCCTTATTAATCCATGGAGGGCAATATGATAGCTTACG 420
consensus_9517#2      ------------------------------------------------------------
consensus_9517#1      ------------------------------------------------------------
                                                                                  

consensus_9517#0      TGCTGACCATGGGATAAACGGTTGAGTTACGGATTCGAACGTAGACTTAAACCTATTCCA 480
consensus_9517#2      ------------------------------------------------------------
consensus_9517#1      ------------------------------------------------------------
                                                                                  

consensus_9517#0      TGCATCATCAATCGATCCATCAGCATCGACCGACCAGTCAATCGAGATAGCATAGTCCCT 540
consensus_9517#2      ------------------------------------------------------------
consensus_9517#1      ------------------------------------------------------------
                                                                                  

consensus_9517#0      GATTGCCGGAATATTAGCTCTCCAGATATTAGGACGGGGTGGAGCAGATGCAAATTCTAT 600
consensus_9517#2      ------------------------------------------------------------
consensus_9517#1      ------------------------------------------------------------
                                                                                  

consensus_9517#0      ACCATGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTATTCACCAGTGGGGGAAG 660
consensus_9517#2      ------------------------------------------------------------
consensus_9517#1      ------------------TAAGTTAGTTATCNAAGGAAGAACAATATCCTCTGTAAACGT 42
                                                                                  

consensus_9517#0      GTGTTGAATGTCGACGATATCTTCACAGTGGTGTGTGAGGACAAGGTCTATCAATGACGG 720
consensus_9517#2      ------------------------------------------------------------
consensus_9517#1      GTAAAGGTCCTATGGCTGGTATCTNATTGTNAACGGGACAAGTAGTTGTAACACCACACG 102
                                                                                  

consensus_9517#0      ATTATGTTCCAAGTCTATATGCGTCGGCTTAACGATACAT-TGTACAAGTGCACATTGAA 779
consensus_9517#2      ---------------------------CCAGGTTGTGCAC-TGTACAAGTGCACATTGAA 32
consensus_9517#1      TAGAGTAGACTTCACTGAAATAGTTAGCAAATGTATCCGCATTCGCAAGANCAGATTCAG 162
                                                 *       * *   *   ****  ** *** * 

consensus_9517#0      TAATTGATGACAGAAG-GACGCT--ATCGAAACCCCCACCTGG-AGCTGTGAGCTCTATC 835
consensus_9517#2      TAATTGATGACAGAAG-GACGCT--ATCGAAACCCCCACATGG-AGCTCTGAGCTCTATC 88
consensus_9517#1      CCAATAAAGCTGAATTTAACGCTTAACAGTAATGAAGGGATACCATCACTATGTTTCGTM 222
                        * * * *    *    *****  *  * **        *   * *  *  * *   * 

consensus_9517#0      C--GTTTATGTGGGGTGCATTGAA-GTCTCCAACG-ATGAGACAACATTCTGC----TTT 887
consensus_9517#2      CA-GTTTATATGGAGTGCATTGAA-ATCTCCAACGCATGAGACAACATTCTGC----TTT 142
consensus_9517#1      CGCATTTAAACATACGAAAACAATCGCTTCGGACAGGTAGGACTATCGTATGCAAACTGT 282
                      *   ****          *   *     **  **   *  *** *   * ***    * *

consensus_9517#0      ACTCCAAGAACAG-ACGTGTCTTAGGATAAAGTCGTCAGCGAGACAACACGGACTACGAA 946
consensus_9517#2      ACTCCAAGAACAG-ACGTGTTTTAGGATAAAGTCGTCAGAGAGACAACACGGACTACGAT 201
consensus_9517#1      CGTACGTAAGCAGTGCGGGTTTTAGCTATGGTCTTTTAAACATTTTTTCCGGATTTTAAT 342
                        * *   * ***  ** ** ****          * *   *       **** *   * 

consensus_9517#0      ATATTCCTCCT----ATCGTCACTAACCCGTTTCTAGACCTAATTGTACAACATACTACC 1002
consensus_9517#2      ATATTCCTCCT----ATCGTCACTAACCCGTTTC-------------------------- 231
consensus_9517#1      AATTTTCGCCCTTAAATGATGCCTGACCTGTTGNCAAGCC-------------------- 382
                      *  ** * **     **  *  ** *** ***                            

consensus_9517#0      TCACACGTACCACTTACATGCGCCTCCGATATGATCGAGTTAATGCGGAAGTGGTCCCTA 1062
consensus_9517#2      ------------------------------------------------------------
consensus_9517#1      ------------------------------------------------------------
                                                                                  

consensus_9517#0      ATATATAATATTATGCCTCCTCCCTTGAGACTTCT 1097
consensus_9517#2      -----------------------------------
consensus_9517#1      -----------------------------------