These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1097 fasta sequence [CACGTGTAAAGGTCCTATGGCTGGTATCTCATTGTCAACGGGACAAGTAGTTGTAACACTACACGTAGAGTAGACTTCACTGAAGTAGTTAGCAAATGTCTCCGCTTTCGCTAGATCAGATTCAGTCAATAAAGCTGAATTTTCGCTTAACAGTAATGAGGGGATACCATCACTACGTTTCGTCCGCCTTTTAACGTACGAAAACAGTCGCTTCGGACAATTACGGCTATCGTATGCCAACTGTCGTTCGTAAGCCGTGCGGGATTTAGCTATGGTCTTTTTACATACATTCCGGTTTTTATACTCGCACTTAAATGATGCCTGACCTGTTGACAAGAATAAGTCCCAGAAGTGTTTCCTACGCTTCAACAGCTTCCGGGTTTCCTTATTAATCCATGGAGGGCAATATGATAGCTTACGTGCTGACCATGGGATAAACGGTTGAGTTACGGATTCGAACGTAGACTTAAACCTATTCCATGCATCATCAATCGATCCATCAGCATCGACCGACCAGTCAATCGAGATAGCATAGTCCCTGATTGCCGGAATATTAGCTCTCCAGATATTAGGACGGGGTGGAGCAGATGCAAATTCTATACCATGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTATTCACCAGTGGGGGAAGGTGTTGAATGTCGACGATATCTTCACAGTGGTGTGTGAGGACAAGGTCTATCAATGACGGATTATGTTCCAAGTCTATATGCGTCGGCTTAACGATACATTGTACAAGTGCACATTGAATAATTGATGACAGAAGGACGCTATCGAAACCCCCACCTGGAGCTGTGAGCTC-TATCC-GTTTATGTGGGGTGCATTGAAGTCTCCAACGATGAGACAACATTCTGCTTTACTCCAAGAACAGACGTGTCTTAGGATAAAGTCGTCAGCGAGACAACACGGACTACGAAATATTCCTCCTATCGTCACTAACCCGTTTCTAGACCTAATTGTACAACATACTACCTCACACGTACCACTTACATGCGCCTCCGATATGATCGAGTTAATGCGGAAGTGGTCCCTAATATATAATATTATGCCTCCTCCCTTGAGACTTCT] [+] EMBL CD094362 [CACGTGTAAAGGTCCTATGGCTGGTATCTCATTGTCAACGGGACAAGTAGTTGTAACACTACACGTAGAGTAGACTTCACTGAAGTAGTTAGCAAATGTCTCCGCTTTCGCTAGATCAGATTCAGTCAATAAAGCTGAATTTTCGCTTAACAGTAATGAGGGGATACCATCACTACGTTTCGTCCGCCTTTTAACGTACGAAAACAGTCGCTTCGGACAATTACGGCTATCGTATGCCAACTGTCGTTCGTAAGCCGTGCGGGATTTAGCTATGGTCTTTTTACATACATTCCGGTTTTTATACTCGCACTTAAATGATGCCTGACCTGTTGACAAGAATAAGTCCCAGAAGTGTTTCCTACGCTTCAACAGCTTCCGGGTTTCCTTATTAATCCATGGAGGGCAATATGATAGCTTACGTGCTGACCATGGGATAAACGGTTGAGTTACGGATTCGAACGTAGACTTAAACCTATTCCGTGCATCATCAATCGATCCATCAGCATCGACCGACCAGTCAATCGAGATAGCATAGTCCCTGATTGCCGGAATATTAGTTCTCCA ] [+] EMBL CD148136 [ TTGAGTTACGGATTCGAACGTGGACTTAAACCTATTCCATGCATCATCAATCGATCCATCAGCATCGACCGACCAGTCAATTGAGATAGCATAGTCCCTGATTGCCGGAATATTAGCTCTCCAGATATTAGGACGGGGTGGAGCTGATGCAAATTCTATACCATGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTATTCACCAGTGGGGGAAGATGTTGAATGTCAACGATATCTTCACAGTGGTGTGTGAGGACAAGGTCTATCAATGAC ] [+] EMBL CD087142 [ TGAGTTACGGATTCGAACGTAGACTTGAACCTATTCCATGCATCATCAATCGATCCATCAGCATCGACCGACCAGTCAATTGAAATAGCATAGTCCCTGATTGCCGGAATATTAGCTCTCCATATATTAGGACGGGGTGGAACAGATGCAAATTCTCTACCGTGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTATTCACCAGTGGGGGCAGGTGTTGAATGTCNACGATATCTTCACAGTGGTGTGTGAGGACA ] [+] EMBL CD087141 [ TGAGTTACGGATTCGAACGTAGACTTGAACCTATTCCATGCATCATCAATCGATCCATCAGCATCGACCGACCAGTCAATTGAAATAGCATAGTCCCTGATTGCCGGAATATTAGCTCTCCATATATTAGGACGGGGTGGAACAGATGCAAATTCTATACCGTGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTATTCACCACTGGGGGCAGGTGTTGAATGTCGACGATATCT ] [+] EMBL CD197824 [ TCGATCCATCAGCATCGACCGACCAGTCAATCGAGATAGCATAGTCCCTGATTGCCGGAATATTAGCTCTCCAGATATTAGGACGGGGTGGAGCAGATGCAAATTCTATACCATGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTGTTCACCAGTGGGGGAAGGTGTTGAATGTCGACGATATCTTCACAGTGGTGTGTGAGGACAAGGTCTATCAATGACGGATTATGTTCCAAGTCTATATGCGTCGGCTTAACGATACATTGTACAAGTGCACATTGAATAATTGATGACAGAAGGACGCTATCGAAACCCCCANCTGGAGCTGTGAGCTCTTATCC GTTTATGTGGGGTGCATTGAAGTCTCCAACGATGAGACAACATTC ] [-] EMBL CD061875 [ tcggGATCCATCAGCATCGACCGACCAGTCAATCGAGATAGCATAGTCCCTGATTGCCGGAATATTAGCTCTCCAGATACTAGGACGGGGTGGAGCAGATGCAAATTCTATACCATGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTATTCACCAGTGGGGGAAGGTGTCGAATGTCGACGATATCTTCACAGTGGTGTGTGAGGACAAGGTCTATCAATGACGGATTATGTTCCAAGTCTATATGCGTCGGCTTAACGATACATTGTACAAGTGCACAT ] [-] EMBL CD197647 [ GTTGAATGTCGACGATATCTTCACAGTGGTGTGTGAGGACAAGGTCTATCAATGACGGATTATGTTCCAAGTCTATATGCGTCGGCTTAACGATACATTGTACAAGTGCACATTGAATAATTGATGACAGAAGGACGCTATCGAAACCCCCACCTGGAGCTGTGAGCTC TATCCAGTTTATGTGGGGTGCATTGAAGTCTCCAACGATGAGACAACATTCTGCTTTACTCCAAGAACAGACGTGTCTTAGGATAAAGTCGTCAGCGAGACAACACGGACTACGAAATATTCCTCCTATCGTCACTAACCCGTTTCTAGACCTAATTGTACAACATACTACCTCACACGTACCACTTACATGCGCCTCCGATATGATCGAGTT ] [-] EMBL CD096943 [ GTGTGTGAGGACAAGGTCTATCAATGACGGATTATGTTCCAAGTCTATATGCGTCGGCTTAACGATACATTGTACAAGTGCACATTGAATAATTGATGACAGAAGGACGCTATCGAAACCCCCACCTGGAGCTGTGAGCTC TATCCAGTTTATATGGGGTGCATTGAAGTCTCCAACGTTGAGACAACATTCTGCTTTACTCCAAGAACAGACGTGTTTTAGGATAAAGTCGTCAGCGAGACAACACGGACTACGATATATTCCTCCTATCGTCACTAACCCGTTTCTAGACCTAATTGTACAACATACTACCTCACACGTACCACTTACATGCGCCTCCGATATGATCGAGTTAATGCGGAAGTGGTCCCTAATATATAATATTATGCCTCCTCCCTTGAGACTTCT] consensusID : consensus_9517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [TAAGTTAGTTATCNAAGGAAGAACAATATCCTCTGTAAACGTGTAAAGGTCCTATGGCTGGTATCTNATTGTNAACGGGACAAGTAGTTGTAACACCACACGTAGAGTAGACTTCACTGAAATAGTTAGCAAATGTATCCGCATTCGCAAGANCAGATTCAGCCAATAAAGCTGAATTTAACGCTTAACAGTAATGAAGGGATACCATCACTATGTTTCGTMCGCATTTAAACATACGAAAACAATCGCTTCGGACAGGTAGGACTATCGTATGCAAACTGTCGTACGTAAGCAGTGCGGGTTTTAGCTATGGTCTTTTAAACATTTTTTCCGGATTTTAATAATTTTCGCCCTTAAATGATGCCTGACCTGTTGNCAAGCC] [+] EMBL AI764888 [TAAGTTAGTTATCNAAGGAAGAACAATATCCTCTGTAAACGTGTAAAGGTCCTATGGCTGGTATCTNATTGTNAACGGGACAAGTAGTTGTAACACCACACGTAGAGTAGACTTCACTGAAATAGTTAGCAAATGTATCCGCATTCGCAAGANCAGATTCAGCCAATAAAGCTGAATTTAACGCTTAACAGTAATGAAGGGATACCATCACTATGTTTCGTMCGCATTTAAACATACGAAAACAATCGCTTCGGACAGGTAGGACTATCGTATGCAAACTGTCGTACGTAAGCAGTGCGGGTTTTAGCTATGGTCTTTTAAACATTTTTTCCGGATTTTAATAATTTTCGCCCTTAAATGATGCCTGACCTGTTGNCAAGCC] consensusID : consensus_9517#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence [CCAGGTTGTGCACTGTACAAGTGCACATTGAATAATTGATGACAGAAGGACGCTATCGAAACCCCCACATGGAGCTCTGAGCTCTATCCAGTTTATATGGAGTGCATTGAAATCTCCAACGCATGAGACAACATTCTGCTTTACTCCAAGAACAGACGTGTTTTAGGATAAAGTCGTCAGAGAGACAACACGGACTACGATATATTCCTCCTATCGTCACTAACCCGTTTC] [+] EMBL CD061359 [CCAGGTTGTGCACTGTACAAGTGCACATTGAATAATTGATGACAGAAGGACGCTATCGAAACCCCCACATGGAGCTCTGAGCTCTATCCAGTTTATATGGAGTGCATTGAAATCTCCAACGCATGAGACAACATTCTGCTTTACTCCAAGAACAGACGTGTTTTAGGATAAAGTCGTCAGAGAGACAACACGGACTACGATATATTCCTCCTATCGTCACTAACCCGTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9517#0 CACGTGTAAAGGTCCTATGGCTGGTATCTCATTGTCAACGGGACAAGTAGTTGTAACACT 60 consensus_9517#2 ------------------------------------------------------------ consensus_9517#1 ------------------------------------------------------------ consensus_9517#0 ACACGTAGAGTAGACTTCACTGAAGTAGTTAGCAAATGTCTCCGCTTTCGCTAGATCAGA 120 consensus_9517#2 ------------------------------------------------------------ consensus_9517#1 ------------------------------------------------------------ consensus_9517#0 TTCAGTCAATAAAGCTGAATTTTCGCTTAACAGTAATGAGGGGATACCATCACTACGTTT 180 consensus_9517#2 ------------------------------------------------------------ consensus_9517#1 ------------------------------------------------------------ consensus_9517#0 CGTCCGCCTTTTAACGTACGAAAACAGTCGCTTCGGACAATTACGGCTATCGTATGCCAA 240 consensus_9517#2 ------------------------------------------------------------ consensus_9517#1 ------------------------------------------------------------ consensus_9517#0 CTGTCGTTCGTAAGCCGTGCGGGATTTAGCTATGGTCTTTTTACATACATTCCGGTTTTT 300 consensus_9517#2 ------------------------------------------------------------ consensus_9517#1 ------------------------------------------------------------ consensus_9517#0 ATACTCGCACTTAAATGATGCCTGACCTGTTGACAAGAATAAGTCCCAGAAGTGTTTCCT 360 consensus_9517#2 ------------------------------------------------------------ consensus_9517#1 ------------------------------------------------------------ consensus_9517#0 ACGCTTCAACAGCTTCCGGGTTTCCTTATTAATCCATGGAGGGCAATATGATAGCTTACG 420 consensus_9517#2 ------------------------------------------------------------ consensus_9517#1 ------------------------------------------------------------ consensus_9517#0 TGCTGACCATGGGATAAACGGTTGAGTTACGGATTCGAACGTAGACTTAAACCTATTCCA 480 consensus_9517#2 ------------------------------------------------------------ consensus_9517#1 ------------------------------------------------------------ consensus_9517#0 TGCATCATCAATCGATCCATCAGCATCGACCGACCAGTCAATCGAGATAGCATAGTCCCT 540 consensus_9517#2 ------------------------------------------------------------ consensus_9517#1 ------------------------------------------------------------ consensus_9517#0 GATTGCCGGAATATTAGCTCTCCAGATATTAGGACGGGGTGGAGCAGATGCAAATTCTAT 600 consensus_9517#2 ------------------------------------------------------------ consensus_9517#1 ------------------------------------------------------------ consensus_9517#0 ACCATGTATCCGGAACTTAAAGGAAAGTACGACATGGTCACTATTCACCAGTGGGGGAAG 660 consensus_9517#2 ------------------------------------------------------------ consensus_9517#1 ------------------TAAGTTAGTTATCNAAGGAAGAACAATATCCTCTGTAAACGT 42 consensus_9517#0 GTGTTGAATGTCGACGATATCTTCACAGTGGTGTGTGAGGACAAGGTCTATCAATGACGG 720 consensus_9517#2 ------------------------------------------------------------ consensus_9517#1 GTAAAGGTCCTATGGCTGGTATCTNATTGTNAACGGGACAAGTAGTTGTAACACCACACG 102 consensus_9517#0 ATTATGTTCCAAGTCTATATGCGTCGGCTTAACGATACAT-TGTACAAGTGCACATTGAA 779 consensus_9517#2 ---------------------------CCAGGTTGTGCAC-TGTACAAGTGCACATTGAA 32 consensus_9517#1 TAGAGTAGACTTCACTGAAATAGTTAGCAAATGTATCCGCATTCGCAAGANCAGATTCAG 162 * * * * **** ** *** * consensus_9517#0 TAATTGATGACAGAAG-GACGCT--ATCGAAACCCCCACCTGG-AGCTGTGAGCTCTATC 835 consensus_9517#2 TAATTGATGACAGAAG-GACGCT--ATCGAAACCCCCACATGG-AGCTCTGAGCTCTATC 88 consensus_9517#1 CCAATAAAGCTGAATTTAACGCTTAACAGTAATGAAGGGATACCATCACTATGTTTCGTM 222 * * * * * ***** * * ** * * * * * * * consensus_9517#0 C--GTTTATGTGGGGTGCATTGAA-GTCTCCAACG-ATGAGACAACATTCTGC----TTT 887 consensus_9517#2 CA-GTTTATATGGAGTGCATTGAA-ATCTCCAACGCATGAGACAACATTCTGC----TTT 142 consensus_9517#1 CGCATTTAAACATACGAAAACAATCGCTTCGGACAGGTAGGACTATCGTATGCAAACTGT 282 * **** * * ** ** * *** * * *** * * consensus_9517#0 ACTCCAAGAACAG-ACGTGTCTTAGGATAAAGTCGTCAGCGAGACAACACGGACTACGAA 946 consensus_9517#2 ACTCCAAGAACAG-ACGTGTTTTAGGATAAAGTCGTCAGAGAGACAACACGGACTACGAT 201 consensus_9517#1 CGTACGTAAGCAGTGCGGGTTTTAGCTATGGTCTTTTAAACATTTTTTCCGGATTTTAAT 342 * * * *** ** ** **** * * * **** * * consensus_9517#0 ATATTCCTCCT----ATCGTCACTAACCCGTTTCTAGACCTAATTGTACAACATACTACC 1002 consensus_9517#2 ATATTCCTCCT----ATCGTCACTAACCCGTTTC-------------------------- 231 consensus_9517#1 AATTTTCGCCCTTAAATGATGCCTGACCTGTTGNCAAGCC-------------------- 382 * ** * ** ** * ** *** *** consensus_9517#0 TCACACGTACCACTTACATGCGCCTCCGATATGATCGAGTTAATGCGGAAGTGGTCCCTA 1062 consensus_9517#2 ------------------------------------------------------------ consensus_9517#1 ------------------------------------------------------------ consensus_9517#0 ATATATAATATTATGCCTCCTCCCTTGAGACTTCT 1097 consensus_9517#2 ----------------------------------- consensus_9517#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||