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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 766 fasta sequence
[AGAGTAAGCTTCTCATAATAAACTTAGTCTGCTTCGGGATAATGTCTAATAAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAATAAATTCATTCTATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCTCACGATCTTTTACAATTCCGAGATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAGGAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTTAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTTTAGAATTTAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGCTTTGTCTGACTCTTGTGATAAGCTGAAAAGTGCTGTTGAATCTACTTCACAAACCATTAAAAAGAAACGAAATTATTTGGCTAGTTTTGGCCCAAAGTTGAAGGATGTTGCTGAAAGTACTTTGATTGTCCAGGAACTAATGGACTTACCATTTACAAGCGAGAATGAACAGTATAATTTGGCCTTTCTCCTACCTTCACC]
[+] EMBL AI976683 [AGAGTAAGCTTCTCATAATAAACTTAGTCTGCTTCGGGATAATGTCTAATAAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAATAAATTCATTCTATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCTCACGATCTTTTACAATTCCGAGATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAGGAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTTAGGTTTGCAGAATCTTTTATAT ]
[+] EMBL CD197005 [ GCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCTCTTAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGGAATTCAAATATGTTTAGAATTTAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGG ]
[+] EMBL CD164013 [ TTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTTTAGAATTTAGGTCTCGAGGTGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGCTTTGTCTGACTCTTGTGATAAGCTGAAAAGTGCTGTTGAATCTACTTCACAAACCATTAAAAAGAAACGAAATTATTTGGCTAGTTTTGGCCCAAAGTTGAAGGATGTTGCTGAAAGTACTTTGATTGTCCAGGAACTAATGGACTTACCATTTACAAGCGAGAATGAACAGTATAATTTGGCCTTTCTCCTACCTTCACC]
[+] EMBL CD163989 [ TTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTTTAGAATTTAGGTCTCGACAGGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGCTTTGTCTGACTCTTGTGATAAGCTGAAAAGTGCTGTTGAATCTACTTCACAAACCATTAAAAAGAAACGAAATTATTTGGCTAGTTTTGGCCCAAAGTTGAAGGATGTCGCTGAAAGTACTTTGATTGTCCAGGAACTAATGGACTTACCATTTACAAGCG ]
consensusID : consensus_9518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 614 fasta sequence
[CACACGAGACGGCGTCAAGTTTGTGTGCAGCGTTACGGCGTCACAGAGATAATGTCTAATAAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAAT-AAATTCATTCTATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCCCACGATCTTTTACAATTCCGAGATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAGGAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTT-AGG--TTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTTTAGGATTTAGGTGAGTTGTATTTTAGTGTTTGCTTATTTACCACAATAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGTTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGC]
[+] EMBL CD164533 [CACACGAGACGGCGTCAAGTTTGTGTGCAGCGTTACGGCGTCACAGAGATAATGTCTAATAAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAAT AAATTCATTCTATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCCCACGATCTTTTACAATTCCGAGATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAGGAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTTNAGG TTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCANACATGTT ]
[+] EMBL CD164537 [ TTTGTGTGCAGCGTTACGGCGTCACAGAGATAATGTCTAATAAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAATAAAATTCATTCTATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCTCACGATCTTTTACAATTCCGAGATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAGGAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTT AGGGTTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTT ]
[+] EMBL CD197201 [ GCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTT AGG TTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTTTAGGATTTAGGTGAGTTGTATTTTAGTGTTTGCTTATTTACCACAATAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGTTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGG ]
[-] EMBL CD197116 [ CTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAGGTGGATCAGTTGCACTT AGG TTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTTTAGGATTTAGGTGAGTTGTATTTTAGTGTTTGCTTATTTACCACAATAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGTTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGC]
consensusID : consensus_9518#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence
[GCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTTAGGTTTGCAGAATCTTTTATATGAAGTCGCCCACCTTGAAAATGAAATTCAAACATGTTTAGAATTTAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGCGTAATTTTCTTTTTATTAAATAGTTTAGTGTATTCCA]
[+] EMBL CD197217 [GCTTCGCAGTTTGCCTCACTGATGATATCTATCAAGGAGTTGAACAGAAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGTGGATCAGTTGCACTTAGGTTTGCAGAATCTTTTATATGAAGTCGCCCACCTTGAAAATGAAATTCAAACATGTTTAGAATTTAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGCTTGAACAACGAAAGGCGTAATTTTCTTTTTATTAAATAGTTTAGTGTATTCCA]
consensusID : consensus_9518#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence
[ATGTGCTTCAACATCTCTGCCTCCGATATATGTCTATCAACGTATTATCAGATCAAATCATTATTGATTCTAGTCATTTCAGAATTAACTGCAGATAATACGAATTATGTGTGATCAGTTGCCCTCAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTATAGAATTTAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCCTTGGGAGCTTGAACAACGAAAG]
[+] EMBL CD196944 [ATGTGCTTCAACATCTCTGCCTCCGATATATGTCTATCAACGTATTATCAGATCAAATCATTATTGATTCTAGTCATTTCAGAATTAACTGCAGATAATACGAATTATGTGTGATCAGTTGCCCTCAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATGAAATTCAAACATGTATAGAATTTAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTGGGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCCTTGGGAGCTTGAACAACGAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9518#0 ----------AGAGTAAGCTTCTCATAATAAACTTAGTCTGCTTCGGGATAATGTCTAAT 50
consensus_9518#2 ------------------------------------------------------------
consensus_9518#1 CACACGAGACGGCGTCAAGTTTGTGTGCAGCGTTACGGCGTCACAGAGATAATGTCTAAT 60
consensus_9518#3 ------------------------------------------------------------
consensus_9518#0 AAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAATAAATTCATTC 110
consensus_9518#2 ------------------------------------------------------------
consensus_9518#1 AAAGGCAAATCGCAAGATGAAGCTCTTAATAACGAAAATTCAAAGTCAATAAATTCATTC 120
consensus_9518#3 ------------------------------------------------------------
consensus_9518#0 TATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCTCACGATCTTTTACAATTCCGA 170
consensus_9518#2 ------------------------------------------------------------
consensus_9518#1 TATCATGAAGAGAATTCTGTGAAATTGGATGGAAGTGCCCACGATCTTTTACAATTCCGA 180
consensus_9518#3 ------------------------------------------------------------
consensus_9518#0 GATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAG 230
consensus_9518#2 ------------------------------------------------------------
consensus_9518#1 GATTGTTGTGAATCCTTACGCGAGTTCATAAAAAATACATGGCAGCGTAAAAAATCACAG 240
consensus_9518#3 ------------------------------------------------------------
consensus_9518#0 GAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATG-ATATCTATCAAGGAGTTGAACAG 289
consensus_9518#2 ------------GCTTCGCAGTTTGCCTCACTGATG-ATATCTATCAAGGAGTTGAACAG 47
consensus_9518#1 GAGAAGATTAATGCTTCGCAGTTTGCCTCACTGATG-ATATCTATCAAGGAGTTGAACAG 299
consensus_9518#3 --------ATGTGCTTCAACATCTCTGCCTCCGATATATGTCTATCAACGTATT-ATCAG 51
***** * * * * *** ** ******** * ** * ***
consensus_9518#0 AAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGT 349
consensus_9518#2 AAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGT 107
consensus_9518#1 AAGAACTCAGTTTAGGATTCGAAAATCTCGAGAAATAACTGCAGAGAATAAGAATAAAGT 359
consensus_9518#3 ATCAAATCATTATTGATTCTAGTCATTTC-AGAATTAACTGCAGATAATACGAATTATGT 110
* ** *** * * * * ** ** **** ********** **** **** * **
consensus_9518#0 G-GATCAGTTGCACTTAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATG 408
consensus_9518#2 G-GATCAGTTGCACTTAGGTTTGCAGAATCTTTTATATGAAGTCGCCCACCTTGAAAATG 166
consensus_9518#1 G-GATCAGTTGCACTTAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATG 418
consensus_9518#3 GTGATCAGTTGCCCTCAGGTTTGCAGAATCTTTTATATGAAGTCGCTCACCTTGAAAATG 170
* ********** ** ****************************** *************
consensus_9518#0 AAATTCAAACATGTTTAGAATTTAGGT--------------------------------- 435
consensus_9518#2 AAATTCAAACATGTTTAGAATTTAGGT--------------------------------- 193
consensus_9518#1 AAATTCAAACATGTTTAGGATTTAGGTGAGTTGTATTTTAGTGTTTGCTTATTTACCACA 478
consensus_9518#3 AAATTCAAACATGTATAGAATTTAGGT--------------------------------- 197
************** *** ********
consensus_9518#0 ------CTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTG 489
consensus_9518#2 ------CTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTG 247
consensus_9518#1 ATAGGTCTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTG 538
consensus_9518#3 ------CTCGACATGAAGATATAAAATTAATTCCAGTAGAAGAGTTCTATGAGAAAACTG 251
******************************************************
consensus_9518#0 GGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGC 549
consensus_9518#2 GGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGC 307
consensus_9518#1 GGCGCAGAGTTGGAAGTTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCATTGGGAGC 598
consensus_9518#3 GGCGCAGAGTTGGAAGCTTATCAGAACATCAGGAGACTTTGGAGCGTCTTCCTTGGGAGC 311
**************** ********************************** ********
consensus_9518#0 TTGAACAACGAAAGGCTTTGTCTGACTCTTGTGATAAGCTGAAAAGTGCTGTTGAATCTA 609
consensus_9518#2 TTGAACAACGAAAGGCGTAATTTTCTTTTTAT--TAAATAGTTTAGTGTATTCCA----- 360
consensus_9518#1 TTGAACAACGAAAGGC-------------------------------------------- 614
consensus_9518#3 TTGAACAACGAAAG---------------------------------------------- 325
**************
consensus_9518#0 CTTCACAAACCATTAAAAAGAAACGAAATTATTTGGCTAGTTTTGGCCCAAAGTTGAAGG 669
consensus_9518#2 ------------------------------------------------------------
consensus_9518#1 ------------------------------------------------------------
consensus_9518#3 ------------------------------------------------------------
consensus_9518#0 ATGTTGCTGAAAGTACTTTGATTGTCCAGGAACTAATGGACTTACCATTTACAAGCGAGA 729
consensus_9518#2 ------------------------------------------------------------
consensus_9518#1 ------------------------------------------------------------
consensus_9518#3 ------------------------------------------------------------
consensus_9518#0 ATGAACAGTATAATTTGGCCTTTCTCCTACCTTCACC 766
consensus_9518#2 -------------------------------------
consensus_9518#1 -------------------------------------
consensus_9518#3 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||