cluster # 9520

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9520 cluster # 9520 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9520#0 length = 862 sequences # 8

consensus_9520#1 length = 452 sequences # 2

consensusID : consensus_9520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 862
fasta sequence

                              [GGCTTTTTCGAGTTATATTCTAAGTGCATTTCAATGAGTTGGCATCAGCCTGGTCTTGATGTTAGTGCGGCTCCTTTACACCAACTTACACCTCATGGTCTGTTATCAAATGAATATCTTTCTGGATTTGATCAGAGTTCTGGTGGTATGGATTCGGAAAACGCACTCTTGACGGAGCAGCGTGCACAGTTGACAGGGAGAGAACTTCAACAGCTTCTTAGTGTTGCTCACCAAAGTTTAGATGAAGCTCAGGAAAGAAAACAGTCATTAAATAGTCATAGATTAAAGCCTGCTCTATACAGTGTGTTCTGTGAAATCAAGGAGAAAACAGCTCTAAGTTTGAGAAACTCAGCTGTTTCTGCTGTAGAAGATGAAGCTAATTCACCAGATCCGCAGCTTCTACGCTTGGATAAAATGTTAGTTGCTGAGGGTGTAACTGGACCTGGTGGTAGTCTGAATAATGATCTAAGTGACGGTCCTGGAGATTTGGGTGGGGGACCCGGTGATTGTAATCAAATTGAACATGCTGATTATCGCGCCAAATTGTCTCAGATTCGCCAGATATATCATGCAGAATTGGAGAAATATAAAAATGCGTGTGATGAATTCACAGGACATGTTATAAATTTATTACGTGAACAAAGTCGTAGTCGACCTATAAGCCCAGCAGAAATTGAACTTATGGTTGGTATAATTCGGAGGAAGTTTCGAGCAATTGAAACACAATTGAAACAAAGTACTTGTGAAGCAGTTATGATATTGCGATCTCGATTTTTGGACGCTAG-ACGTAAGCGTCGAAATTTCAGTAAAGAAGCTACTGAAGTACTGAATGAGTATTTCTACTCTCATTTGGCTAATCCAT]

[+] EMBL CD119784             [GGCTTTTTCGAGTTATATTCTAAGTGCATTTCAATGAGTTGGCATCAGCCTGGTCTTGAGGTTAGGGCGGCTCCTTTACACCAACTTACACCTAATGGTCTGTTATCAAATGAATATCTTTCTGGATTTGATCAGAGTTCTGGTGGTATGGATTCGGAAAACGCACTCTTGACGGAGCAGCGTGCACAGTTGACAGGGAGAGAACTTCAACAGCTTCTTAGTGTTGCTCACCAAAGTTTAGATGAAGCTCAGGAAAGAAAACAGTCATTAAATAGTCATAGATTAAAGCCTGCTCTATACAGTGTGTTCTGTGAAATCAAGGAGAAAACAGCTCTAAGTTTGAGAAACTCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD119857             [GGCTTTTTCGAGTTATATTCTAAGTGCATTTCAATGAGTTGGCATCAGCCTGGTCTTGATGTTAGTGCGGCTCCTTTACACCAACTTACACCTCATGGTCTGTTATCAAATGAATATCTTTCTGGATTTGATCAGAGTTCTGGTGGTATGGATTCGGAAAACGCACTCTTGACGGAGCAGCGTGCACAGTTGACAGGGAGAGAACTTCAACAGCTTCTTAGTGTTGCTCACCAAAGTTTAGATGAAGCTCAGGAAAGAAAACAGTCATTAAATAGTCATAGATTAAAGCCTGCTCTATACAGTGTGTTCTGTGAAATCAAGGAGAAAACAGCTCTAAGTTTGAGAAACTCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD119948             [ GCTTTTTCGAGTTATATTCTAAGTGCATTTCAATGAGTTGGCATCAGCCTGGTCTTGATGTTAGTGCGGCTCCTTTACACCAACTTACACCTCATGGTCTGTTATCAAATGAATATCTTTCTGGATTTGATCAGAGTTCTGGTGGTATGGATTCGGAAAACGCACTCTTGACGGAGCAGCGTGCACAGTTGACAGGGAGAGAACTTCAACAGCTTCTTAGTGTTGCTCACCAAAGTTTAGATGAAGCTCAGGAAAGAAAACAGTCATTAAATAGTCATAGATTAAAGCCTGCTCTATACAGTGTGTTCTGTGAAATCAAGGAGAAAACAGCTCTAAGTTTGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD184878             [                                                                                       ACACCTCATGGTCTGTTATCAAATGAATATCTTTCTGGATTTGATCAGAGTTCTGGTGGTATGGATTCGGAAAACGCACTCTTGACGGAGCAGCGTGCACAGTTGACAGGGAGAGAACTTCAACAGCTTCTTAGTGTTGCTCACCAAAGTTTAGATGAAGCTCAGGAAAGAAAACAGTCATTAAATAGTCATAGATTAAAGCCTGCTCTATACAGTGTGTTCTGTGAAATCAAGGAGAAAACAGCTCTAAGTTTGAGAAACTCAGCTGTTTCTGCTGTAGAAGATGAAGCTAACTCACCAGATCCGCAGCTTCTACGCTTGGATAAAATGTTAGTTGCTGAGGGTGTAACTGGACCTGGTGGTAGTCTGAATAATGATCTAAGTGACGGTCCTGGAGATTTGGGTGGGGGACCCGGTGATTGTAATCAAATTGAACATGCTGATTATCGCG                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD166266             [                                                                                                                                                                                                              ttAACAGCTTCTTAGTGTTGCTCACCAAAGTTTAGATGAAGCTCAGGAAAGAAAACAGTCATTAAATAGTCATAGATTAAAGCCTGCTCTATACAGTGTGTTCTGTGAAATCAAGGAGAAAACAGCTCTAAGTTTGAGAAACTCAGCTGTTTCTGCTGTAGAAGATGAAGCTAATTCACCAGATCCGCAGCTTCTACGCTTGGATAAAATGTTAGTTGCTGAGGGTGTAACTGGACCTGGTGGTAGTCTGAATAATG                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD184332             [                                                                                                                                                                                                                                    CACCAAAGTTTAGATGAAGCTCAGGAAAGAAAACAGTCATTAAATAGTCATGGATTAAAGCCTGCTCTATACAGTGTGTTCTGTGAAATCAAGGAGAAAACAGCTCTAAGTTTGAGAAACTCAGCTGTTTCTGCTGTAGAAGATGAAGCTAATTCACCAGATCCGCAGCTTCTACGCTTGGATAAAATGTTAGTTGCTGAGGGTGTAACTGGACCTGGTGGTAGTCTGAATAATGATCTAAGTGACGGTCCTGGAGATTTGGGTGGGGGACCCGGTGATTGTAATCAAATTGAACATGCTGATTATCGCGCCAAATTGTCTCAGATTCGCCAGATATATCATGCAGAATTGGAGAAATATAAAAATGCGTGTGATGAATTCACAGGACATGTTATAAATTTATTACGTGAACAAAGTCGTAGTCGACCTATAAGCCCAGCAGAAATTGAACTTATGGTTGGTATAATTCGGAGGAAGTTTCGAGCAATTGAAACACAATTGAAACAAAGTACTTGTGAAGCAGTTATGATATTGCGATCTCGATTTTTGGACGCTAG ACGTAAGCGTCGAAATTTCAGTANAGAAGCTACTGAAGTACTGAATGAGTATTTCTACTCTCATTTGGCTAATCCA ]
[+] EMBL CD201509             [                                                                                                                                                                                                                                               AGATGAAGCTCAGGAAAGAAAACAGTCATTAAATAGTCATAGATTAAAGCCTGCTCTATACAGTGTGTTCTGTGAAATCAAGGAGAAAACAGCTCTAAGTTTGAGAAACTCAGCTGTTTCTGCTGTAGAAGATGAAGCTAATTCACCAGATCCGCAGCTTCTACGCTTGGATAAAATGTTAGTTGCTGAGGGTGTAACTGGACCTGGTGGTAGTCTGAATAATGATCTAAGTGACGGTCCTGGAGATTTGGGTGGGGGACCCGGTGATTGTAATCAAATTGAACATGCTGATTATCGCGCCAAATTGTCTCAGATTCGCCAGATATATCATGCAGAATTGGAGAAATATAAAAATGCGTGTGATGAATTCACAGGACATGTTATAAATTTATTACGTGAACAAAGTCGTAGTCGACCTATAAGCCCAGCAGAAATTGAACTTATGGTTGGTATAATTCGGAGGAAGTTTCGAGCAATTGAAACACAATTGAAACAAAGTACTTGTGAAGCAGTTATGATATTGCGATCTCGATTNTTGGACGCTAGNACGT AGCGTCGAAATTTCAGTAAAGAAGCTACTGAAGTACTGAATGAGTATNTCTACTCTCATTTGGCTAA     ]
[-] EMBL CD190700             [                                                                                                                                                                                                                                                                                                                                                               GCTGTTTCTGCTGTAGAAGATGAAGCTAATTCACCAGATCCGCAGCTTCTACGCTTGGATAAAATGTTAGTTGCTGAGGGTGTAACTGGACCTGGTGGTAGTCTGAATAATGATCTAAGTGACGGTCCTGGAGATTGGGGTGGGGGACCCGGTGATTGTAATCAAATTGAACATGCTGATTATCGCGCCAAATTGTCTCAGATTCGCCAGATATATCATGCAGAATTGGAGAAATATAAAAATGCGTGTGATGAATTCACAGGACATGTTATAAATTTATTACGTGAACAAAGTCGTAGTCGACCTATAAGCCCAGCAGAAATTGAACTTATGGTTGGTATAATTCGGAGGAAGTTTCGAGCAATTGAAACACAATTGAAACAAAGTACTTGTGAAGCAGTTATGATATTGCGATCTCGATTTTTGGACGCTAG ACGTAAGCGTCGAAATTTCAGTAAAGAAGCTACTGAAGTACTGAATGAGTATTTCTACTCTCATTTGGCTAATCCAT]




>consensus_9520#0
GGCTTTTTCGAGTTATATTCTAAGTGCATTTCAATGAGTTGGCATCAGCCTGGTCTTGAT
GTTAGTGCGGCTCCTTTACACCAACTTACACCTCATGGTCTGTTATCAAATGAATATCTT
TCTGGATTTGATCAGAGTTCTGGTGGTATGGATTCGGAAAACGCACTCTTGACGGAGCAG
CGTGCACAGTTGACAGGGAGAGAACTTCAACAGCTTCTTAGTGTTGCTCACCAAAGTTTA
GATGAAGCTCAGGAAAGAAAACAGTCATTAAATAGTCATAGATTAAAGCCTGCTCTATAC
AGTGTGTTCTGTGAAATCAAGGAGAAAACAGCTCTAAGTTTGAGAAACTCAGCTGTTTCT
GCTGTAGAAGATGAAGCTAATTCACCAGATCCGCAGCTTCTACGCTTGGATAAAATGTTA
GTTGCTGAGGGTGTAACTGGACCTGGTGGTAGTCTGAATAATGATCTAAGTGACGGTCCT
GGAGATTTGGGTGGGGGACCCGGTGATTGTAATCAAATTGAACATGCTGATTATCGCGCC
AAATTGTCTCAGATTCGCCAGATATATCATGCAGAATTGGAGAAATATAAAAATGCGTGT
GATGAATTCACAGGACATGTTATAAATTTATTACGTGAACAAAGTCGTAGTCGACCTATA
AGCCCAGCAGAAATTGAACTTATGGTTGGTATAATTCGGAGGAAGTTTCGAGCAATTGAA
ACACAATTGAAACAAAGTACTTGTGAAGCAGTTATGATATTGCGATCTCGATTTTTGGAC
GCTAGACGTAAGCGTCGAAATTTCAGTAAAGAAGCTACTGAAGTACTGAATGAGTATTTC
TACTCTCATTTGGCTAATCCAT

consensusID : consensus_9520#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 452
fasta sequence

                              [TTGGATAAAATGTTAGTTGCTGAGGGTGTAACTGGACCTGGTGGTAGTCTGAATAATGATCTAAGTGACGGTCCTGGAGATTTGGGTGGGGGACCCGGTGATTGTAATCAAATTGAACATGCTGATTATCGCGCCAAATTGTCTCAGATTCGCCAGATATATCATGCAGAATTGGAGAAATATAAAAATGCGTGTGATGAATTCACAGGACATGTTATAAATTTATTACGTGAACAAAGTCGTAGTCGACCTATAAGCCCAGCAGAAATTGAACTTATGGTTGGTATAATTCGGAGGAAGTTTCGAGCAATTGAAACACAATTGAAACAAGTCTCTAATTGGTTTGGAAACAAACGTATTCGGTACAAAAAGAACATTGTAAAGGCTCAAGAGGAAGCAAATATGTATGCTGCGGCAACAGCCGCGGCAGCTGCTGCCGCTGGGTCTGTGGC]

[+] EMBL CD199485             [TTGGATAAAATGTTAGTTGCTGAGGGTGTAACTGGACCTGGTGGTAGTCTGAATAATGATCTAAGTGACGGTCCTGGAGATTTGGGTGGGGGACCCGGTGATTGTAATCAAATTGAACATGCTGATTATCGCGCCAAATTGTCTCAGATTCGCCAGATATATCATGCAGAATTGGAGAAATATAAAAATGCGTGTGATGAATTCACAGGACATGTTATAAATTTATTACGTGAACAAAGTCGTAGTCGACCTATAAGCCCAGCAGAAATTGAACTTATGGTTGGTATAATTCGGAGGAAGTTTCGAGCAATTGAAACACAATTGAAACAAGTCTCTAATTGGTTTGGAAACAAACGTATTCGGTACAAAAAGAACATTGTAAAGGCTCAAGAGGAAGCAAATATGTATGCTGCGGCAACAGCCGCGGCAGCTGCTGCCGCTGGGTCTGTGGC]
[+] EMBL CD199508             [TTGGATAAAATGTTAGTTGCTGAGGGTGTAACTGGACCTGGTGGTAGTCTGAATAATGATCTAAGTGACGGTCCTGGAGATTTGGGTGGGGGACCCGGTGATTGTAATCAAATTGAACATGCTGATTATCGCGCCAAATTGTCTCAGATTCGCCAGATATATCATGCAGAATTGGAGAAATATAAAAATGCGTGTGATGAATTCACAGGACATGTTATAAATTTATTACGTGAACAAAGTCGTAGTCGACCTATAAGCCCAGCAGAAATTGAACTTATGGTTGGTATAATTCGGAGGAAGTTTCGAGCAATTGAAACACAATTGAAACAAGTCTCTAATTGGTTTGGAAACAAACGTATTCGGTACAAAAAGAACATTGTAAAGGCTCAAGAGGAAGCAAATATGTATGCTGCGGCAACAGCCGCGGCAGCTGCTGCCGCTGGGTCTGTG  ]




>consensus_9520#1
TTGGATAAAATGTTAGTTGCTGAGGGTGTAACTGGACCTGGTGGTAGTCTGAATAATGAT
CTAAGTGACGGTCCTGGAGATTTGGGTGGGGGACCCGGTGATTGTAATCAAATTGAACAT
GCTGATTATCGCGCCAAATTGTCTCAGATTCGCCAGATATATCATGCAGAATTGGAGAAA
TATAAAAATGCGTGTGATGAATTCACAGGACATGTTATAAATTTATTACGTGAACAAAGT
CGTAGTCGACCTATAAGCCCAGCAGAAATTGAACTTATGGTTGGTATAATTCGGAGGAAG
TTTCGAGCAATTGAAACACAATTGAAACAAGTCTCTAATTGGTTTGGAAACAAACGTATT
CGGTACAAAAAGAACATTGTAAAGGCTCAAGAGGAAGCAAATATGTATGCTGCGGCAACA
GCCGCGGCAGCTGCTGCCGCTGGGTCTGTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9520#0      GGCTTTTTCGAGTTATATTCTAAGTGCATTTCAATGAGTTGGCATCAGCCTGGTCTTGAT 60
consensus_9520#1      ------------------------------------------------------------
                                                                                  

consensus_9520#0      GTTAGTGCGGCTCCTTTACACCAACTTACACCTCATGGTCTGTTATCAAATGAATATCTT 120
consensus_9520#1      ------------------------------------------------------------
                                                                                  

consensus_9520#0      TCTGGATTTGATCAGAGTTCTGGTGGTATGGATTCGGAAAACGCACTCTTGACGGAGCAG 180
consensus_9520#1      ------------------------------------------------------------
                                                                                  

consensus_9520#0      CGTGCACAGTTGACAGGGAGAGAACTTCAACAGCTTCTTAGTGTTGCTCACCAAAGTTTA 240
consensus_9520#1      ------------------------------------------------------------
                                                                                  

consensus_9520#0      GATGAAGCTCAGGAAAGAAAACAGTCATTAAATAGTCATAGATTAAAGCCTGCTCTATAC 300
consensus_9520#1      ------------------------------------------------------------
                                                                                  

consensus_9520#0      AGTGTGTTCTGTGAAATCAAGGAGAAAACAGCTCTAAGTTTGAGAAACTCAGCTGTTTCT 360
consensus_9520#1      ------------------------------------------------------------
                                                                                  

consensus_9520#0      GCTGTAGAAGATGAAGCTAATTCACCAGATCCGCAGCTTCTACGCTTGGATAAAATGTTA 420
consensus_9520#1      ---------------------------------------------TTGGATAAAATGTTA 15
                                                                   ***************

consensus_9520#0      GTTGCTGAGGGTGTAACTGGACCTGGTGGTAGTCTGAATAATGATCTAAGTGACGGTCCT 480
consensus_9520#1      GTTGCTGAGGGTGTAACTGGACCTGGTGGTAGTCTGAATAATGATCTAAGTGACGGTCCT 75
                      ************************************************************

consensus_9520#0      GGAGATTTGGGTGGGGGACCCGGTGATTGTAATCAAATTGAACATGCTGATTATCGCGCC 540
consensus_9520#1      GGAGATTTGGGTGGGGGACCCGGTGATTGTAATCAAATTGAACATGCTGATTATCGCGCC 135
                      ************************************************************

consensus_9520#0      AAATTGTCTCAGATTCGCCAGATATATCATGCAGAATTGGAGAAATATAAAAATGCGTGT 600
consensus_9520#1      AAATTGTCTCAGATTCGCCAGATATATCATGCAGAATTGGAGAAATATAAAAATGCGTGT 195
                      ************************************************************

consensus_9520#0      GATGAATTCACAGGACATGTTATAAATTTATTACGTGAACAAAGTCGTAGTCGACCTATA 660
consensus_9520#1      GATGAATTCACAGGACATGTTATAAATTTATTACGTGAACAAAGTCGTAGTCGACCTATA 255
                      ************************************************************

consensus_9520#0      AGCCCAGCAGAAATTGAACTTATGGTTGGTATAATTCGGAGGAAGTTTCGAGCAATTGAA 720
consensus_9520#1      AGCCCAGCAGAAATTGAACTTATGGTTGGTATAATTCGGAGGAAGTTTCGAGCAATTGAA 315
                      ************************************************************

consensus_9520#0      ACACAATTGAAACAAAGTACTTGTGAAGCAGTTATGATATTGCGATCTCGATTTTTGGAC 780
consensus_9520#1      ACACAATTGAAACAAGTCTCT----AATTGGTTTGGAAACAAACGTATTCGGTACAAAAA 371
                      ***************    **    **   ***  ** *      * *    *     * 

consensus_9520#0      GCTAGACGTAAGCGTCGAAATTTCAGTAAAGAAGC-TACTGAAGTACTGAATGAGTATTT 839
consensus_9520#1      GAACATTGTAAAGGCTCAAGAGGAAGCAAATATGTATGCTGCGGCAACAGCCGCG-GCAG 430
                      *      ****  *   **     ** *** * *  * ***  * *      * *     

consensus_9520#0      CTACTCTCATTTGGCTAATCCAT 862
consensus_9520#1      CTGCTGCCGCTGGGTCTGTGGC- 452
                      ** **  *  * **    *