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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 969 fasta sequence
[AACGCTCTCACACTCACACTATTCGATTGTCCTAATTTCAAGAAATCAGCGATATGTTTGTTGCATGTTCTCATATTGGTCTGCAGTGGGTTGCGCTTTTACTGGCTTTGATCATGAGTTTCACAGTTCTAACAACATATCTCATTTCCATCTATAGAGGACATGTANNNNNNNNNNNNNNNNNNNNNNNNNCTACAGGTGCCTATCCACCAGAAAGTTGTATATTTGGTGAGGGATTAAACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGAGAACGAAATTTATGGGCACACACCANNNNNNNNNNNNNNNNNNNNNATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAATTTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGCTTTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAANNNATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACTTATCGGCATCCTGGTCAAGGTGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCTTACGAATTCAGATCATATGCTTTTCAGTTACCACAGGTTGTTAAAAAACACCCATTTGAATCCGATATCTATAGCCTCAAAAGCTGAAGACAGCTGCTGGTTACTTTAAAAGCTTTCTCCCTCAACTTCAAATAATCAAATAATTGAAACTTCTAACCCCTACGTTATCACTATATAAATCCATAATTACTTTAATATATTATTATTGATTATTCACCAATAAAACCACA]
[+] EMBL CD081050 [AACGCTCTCACACTCACACTATTCGATTGTCCTAATTTCAAGAAATCAGCGATATGTTTGTTGCATGTTCTCATATTGGTCTGCAGTGGGTTGCGCTTTTACTGGCTTTGATCATGAGTTTCACAGTTCTAACAACATATCTCATTTCCATCTATAGAGGACATGTANNNNNNNNNNNNNNNNNNNNNNNNNCTACAGGTGCCTATCCACCAGAAAGTTGTATATTTGGTGAGGGATTAAACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGAGAACGAAATTTATGGGCACACACCANNNNNNNNNNNNNNNNNNNNNATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAATTTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGCTTTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAANNNATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACTTATCGGCATCCT ]
[-] EMBL CD073173 [ GGAATTTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGC TTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAACACATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACTTATCGGCATCCTGGTCAAGGTGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCTTACGAATTCAGATCATATGCTTTTCAGTTACCACAGGTTGTTAAAAAACACCCATTTGAATCCGATATCTATAGCCTCAAAAGCTGAAGACAGCTGCTGGTTACTTTAAAAGCTTTCTCCCTCAACTTCAAATAATCAAATAATTGAAACTTCTAACCCCTACGTTATCACTATATAAATCCATAATTACTTTAATATATTATTATTGATTA ]
[-] EMBL CD077106 [ GGTCAAGGTGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCTTACGAATTCAGATCATATGCTTTTCAGTTACCACAGGTTGTTAAAAAACACCCATTTGAATCCGATATCTATAGCCTCAAAAGCTGAAGACAGCTGCTGGTTACTTTAAAAGCTTTCTCCCTCAACTTCAAATAATCAAATAATTGAAACTTCTAACCCCTACGTTATCACTATATAAATCCATAATTACTTTAATATATTATTATTGATTATTCACCAATAAAACCACA]
[-] EMBL BG932549 [ CTTTTCAGTTACCACAGGTTGTTAAAAAACACCCATTTGAATCCGATATCTATAGCCTCAAAAGCTGAAGACAGCTGCTGGTTACTTTAAAAGCTTTCTC ]
consensusID : consensus_9523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 585 fasta sequence
[AGAGGACATGTAAATGCAGAATTGCCATTTATCAGCTCTACAGGTGCCTATCCACCAGAAAGTTGTATATTTGGTGAGGGATTAAACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGAGAACGAAATTTATGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAAT-TTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGCTTTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAACACATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACTTATCGGCATCCTGGTCAAGGTGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCT]
[+] EMBL CD078710 [AGAGGACATGTAAATGCAGAATTGCCATTTATCAGCTCTACAGGTGCCTATCCACCAGAAAGTTGTATATTTGGTGAGGGATTAAACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGAGAACGAAATTTATGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAAT TTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGCTTTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAACACATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACTTATCGGCATCCTGGTCAAGGTGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCT]
[+] EMBL CD180790 [ TATTTGGTGAGGGATTAAACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGAGAACGAAATTTATGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAATCTTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGCTTTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAACACATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACT ]
[+] EMBL CD181098 [ TATTTGGTGAGGGATTAAACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGAGAACGAAATTTATGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAAT TTTCAACAAGTTAACGTTGAATTAGTACATGATATTGGTGCTGGGATGGCTTTTTTCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTAGCAAACGATACCTTGGAACACATTGGTGTATATGGGCTTTTAGACTTGTCTTAGGGATTATGGCAGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACT ]
[-] EMBL BG932428 [ AGCAATAACATCAAGTTTGTTTTCAGTCTGTCATACAATTTCCAGAATAAATTTCAACGGTACACAAGAAGAATCTTTGACTTATCGGCATCCTGGTCAAGGTGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCAC ]
consensusID : consensus_9523#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence
[CACGAGGCNCCTTTTGCTGGTATTTAATTGCCCTAAANAGAACGAAATTTATGGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATNGGTTGGGAATTTTCAACAAGTTAACGTTGAATTAGTACATGAATATTGGTGCTGGGAATGGCTTTTTNCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTTAGCAAACGAATACCTTGGAAACACATTGGTGTTATATGGGGCTTTTANACTTGTCTTAGGGGATTATGGGCACCAAATAACATCAAGTTTGGTTTNCAGTTCTGGTCATACAAATTTCCCANAAATAAATTTCAACGGGTACNCAAAAAAANAATCCTTTGAACTTATCGGGCATCCTGGGTCAAGGTGGAATTTTCATTTTAACCTATGCCANTTACAAATTTTTGANTGGGCTGCAGGAATTTANCACNCA]
[+] EMBL AA559825 [CACGAGGCNCCTTTTGCTGGTATTTAATTGCCCTAAANAGAACGAAATTTATGGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTGTCTCTAATTGCTTCAATCGGTTTAACATNGGTTGGGAATTTTCAACAAGTTAACGTTGAATTAGTACATGAATATTGGTGCTGGGAATGGCTTTTTNCGGCACAACGCTTTATATCACTTTATGTGCTTTAGTTTAGCAAACGAATACCTTGGAAACACATTGGTGTTATATGGGGCTTTTANACTTGTCTTAGGGGATTATGGGCACCAAATAACATCAAGTTTGGTTTNCAGTTCTGGTCATACAAATTTCCCANAAATAAATTTCAACGGGTACNCAAAAAAANAATCCTTTGAACTTATCGGGCATCCTGGGTCAAGGTGGAATTTTCATTTTAACCTATGCCANTTACAAATTTTTGANTGGGCTGCAGGAATTTANCACNCA]
consensusID : consensus_9523#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence
[ACATTTGATGCCTAAATGATTTTACTTTCAGGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCTTACGAATTCAGATCATATGCTTTTCAGTTACCACAGGTAAATTTTGATGTTATTAGAATCCTATTCTTTACCACTGTTCTTTTAACATAATGCCAAAAATGCATGTTAAACGAACGCTGACTTATGGTTATTATTTTTAACACCTGAATCTAACAAATAGTCTTCAGGTTTCTAGAATATGGT]
[-] EMBL CD145524 [ACATTTGATGCCTAAATGATTTTACTTTCAGGGATTTTCATTTTATCTATGCAGTACAAGTTTTGAGTGGGCTGCAGGATTTATCATCATAGTGTTTTTTACCACATGGGCTTACGAATTCAGATCATATGCTTTTCAGTTACCACAGGTAAATTTTGATGTTATTAGAATCCTATTCTTTACCACTGTTCTTTTAACATAATGCCAAAAATGCATGTTAAACGAACGCTGACTTATGGTTATTATTTTTAACACCTGAATCTAACAAATAGTCTTCAGGTTTCTAGAATATGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9523#1 ------------------------------------------------------------
consensus_9523#2 ------------------------------------------------------------
consensus_9523#0 AACGCTCTCACACTCACACTATTCGATTGTCCTAATTTCAAGAAATCAGCGATATGTTTG 60
consensus_9523#3 ------------------------------------------------------------
consensus_9523#1 ------------------------------------------------------------
consensus_9523#2 ------------------------------------------------------------
consensus_9523#0 TTGCATGTTCTCATATTGGTCTGCAGTGGGTTGCGCTTTTACTGGCTTTGATCATGAGTT 120
consensus_9523#3 ------------------------------------------------------------
consensus_9523#1 -----------------------------------AGAGGACATGTAAATGCAGAATTGC 25
consensus_9523#2 ------------------------------------------------------------
consensus_9523#0 TCACAGTTCTAACAACATATCTCATTTCCATCTATAGAGGACATGTANNNNNNNNNNNNN 180
consensus_9523#3 ------------------------------------------------------------
consensus_9523#1 CATTTATCAGCTCTACAGGTGCCTATCCACCAGAAAGTTGTATATTTGGTGAGGGATTAA 85
consensus_9523#2 ------------------------------------------------------------
consensus_9523#0 NNNNNNNNNNNNCTACAGGTGCCTATCCACCAGAAAGTTGTATATTTGGTGAGGGATTAA 240
consensus_9523#3 ------------------------------------------------------------
consensus_9523#1 ACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGA 145
consensus_9523#2 ---------------------CACGAGGCNCCTTTTGCTGGTATTTAATTGCCCTAAANA 39
consensus_9523#0 ACATAGCTGCTTTTATCAGTTTGATATGCTCCTTTTGCTGGTATTTAATTGCCCTAGAGA 300
consensus_9523#3 ------------------------------------------------------------
consensus_9523#1 GAACGAAATTTATGGG-CACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTG 204
consensus_9523#2 GAACGAAATTTATGGGGCACACACCAACCAAATTGTCTTCTTAAATTTATGCTTGTATTG 99
consensus_9523#0 GAACGAAATTTATGGG-CACACACCANNNNNNNNNNNNNNNNNNNNN-ATGCTTGTATTG 358
consensus_9523#3 -----------------------------------------------------------A 1
consensus_9523#1 TCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAATTTTCAACAAGTTAACGTTGAA 264
consensus_9523#2 TCTCTAATTGCTTCAATCGGTTTAACATNGGTTGGGAATTTTCAACAAGTTAACGTTGAA 159
consensus_9523#0 TCTCTAATTGCTTCAATCGGTTTAACATTGGTTGGGAATTTTCAACAAGTTAACGTTGAA 418
consensus_9523#3 CATTTGAT-GCCTAAAT-GATTTTACTTT---CAGGGATTTTCATTTTATCTATGCAGTA 56
* * ** ** * *** * *** ** * ** ******* * * * * *
consensus_9523#1 TTAGTACATGA-TATTGGTGCTGGGA-TGGCTTTTTTCGGCACAACGCTTTATATCACTT 322
consensus_9523#2 TTAGTACATGAATATTGGTGCTGGGAATGGCTTTTTNCGGCACAACGCTTTATATCACTT 219
consensus_9523#0 TTAGTACATGA-TATTGGTGCTGGGA-TGGCTTTTTTCGGCACAACGCTTTATATCACTT 476
consensus_9523#3 CAAGTTT-TGA--GTGGGCTGCAGGA------TTTATCATCATAGTGTTTTTTACCAC-- 105
*** *** * ** *** *** * ** * * *** ** ***
consensus_9523#1 TATGTGCTTTAGTT-AGCAAACGA-TACCTTGGAA-CAC-ATTGGTGT-ATATGGG-CTT 376
consensus_9523#2 TATGTGCTTTAGTTTAGCAAACGAATACCTTGGAAACAC-ATTGGTGTTATATGGGGCTT 278
consensus_9523#0 TATGTGCTTTAGTT-AGCAAACGA-TACCTTGGAA-NNN-ATTGGTGT-ATATGGG-CTT 530
consensus_9523#3 -ATGGGCTTACGAATTCAGATCATATGCTTTTCAGTTACCACAGGTAAATTTTGATGTTA 164
*** **** * * * * * ** * * *** * ** *
consensus_9523#1 TTAGA--CTTGTCTTAGGG-ATTATGGCAGC--AATAACATCAAGTTTG-TTTTCAGTCT 430
consensus_9523#2 TTANA--CTTGTCTTAGGGGATTATGGGCACCAAATAACATCAAGTTTGGTTTNCAGTTC 336
consensus_9523#0 TTAGA--CTTGTCTTAGGG-ATTATGGCAGC--AATAACATCAAGTTTG-TTTTCAGTCT 584
consensus_9523#3 TTAGAATCCTATTCTTTACCACTGTTCTTTTAACATAATGCCAAAAATGCATGTTAAACG 224
*** * * * * * * * * **** *** ** * *
consensus_9523#1 --GTCATACAATTTCC---AGAATAAATTTCAACGG---TACACAAGAAGAATCTTT--G 480
consensus_9523#2 TGGTCATACAAATTTCCCANAAATAAATTTCAACGGGTACNCAAAAAAANAATCCTTTGA 396
consensus_9523#0 --GTCATACAATTTCC---AGAATAAATTTCAACGG---TACACAAGAAGAATCTTT--G 634
consensus_9523#3 ----AACGCTGACTTAT-GGTTATTATTTTTAACACCTGAATCTAACAAATAGTCTTCAG 279
* * * ** * *** *** ** ** * **
consensus_9523#1 ACTTATCGG-CATCCTGG-TCAAGGTGGA-TTTTCATTTTA-TCTATGC--AGTACAAGT 534
consensus_9523#2 ACTTATCGGGCATCCTGGGTCAAGGTGGAATTTTCATTTTAACCTATGCCANTTACAAAT 456
consensus_9523#0 ACTTATCGG-CATCCTGG-TCAAGGTGGA-TTTTCATTTTA-TCTATGC--AGTACAAGT 688
consensus_9523#3 GTTTCTAGAATATGGT-------------------------------------------- 295
** * * ** *
consensus_9523#1 TTT-GAGTGGGCTGCAGGA-TTTATCATCATAGTGTTTTTTACCACATGGGCT------- 585
consensus_9523#2 TTTTGANTGGGCTGCAGGAATTTANCA-CNCA---------------------------- 487
consensus_9523#0 TTT-GAGTGGGCTGCAGGA-TTTATCATCATAGTGTTTTTTACCACATGGGCTTACGAAT 746
consensus_9523#3 ------------------------------------------------------------
consensus_9523#1 ------------------------------------------------------------
consensus_9523#2 ------------------------------------------------------------
consensus_9523#0 TCAGATCATATGCTTTTCAGTTACCACAGGTTGTTAAAAAACACCCATTTGAATCCGATA 806
consensus_9523#3 ------------------------------------------------------------
consensus_9523#1 ------------------------------------------------------------
consensus_9523#2 ------------------------------------------------------------
consensus_9523#0 TCTATAGCCTCAAAAGCTGAAGACAGCTGCTGGTTACTTTAAAAGCTTTCTCCCTCAACT 866
consensus_9523#3 ------------------------------------------------------------
consensus_9523#1 ------------------------------------------------------------
consensus_9523#2 ------------------------------------------------------------
consensus_9523#0 TCAAATAATCAAATAATTGAAACTTCTAACCCCTACGTTATCACTATATAAATCCATAAT 926
consensus_9523#3 ------------------------------------------------------------
consensus_9523#1 -------------------------------------------
consensus_9523#2 -------------------------------------------
consensus_9523#0 TACTTTAATATATTATTATTGATTATTCACCAATAAAACCACA 969
consensus_9523#3 -------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||