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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1057 fasta sequence
[CCTCGAGGGCCANAATTCGGCACGAGGTAAAACTAGACAACAAGACGGCTATGAAATTTCTCTGCTCATAAATCAACCTACAATAACTGATAGTGGAAGGTATGAGTGCCGTGCAGGGAATGTTGCTGCTTTCATAGATGTAAATGTGGAAGAATCAGCAATTCCATTCACTGTGCTACTTACAAGTGATGATGGGATTCTAATGACACAATCTACCGATTCAAATGTAACCAAAGCTACTCTATGGAATATTGCTGAAAATAACAAGTATGGACGTGTCTCCATGGTTGGTGATTGTAATAGTCAACGAATTATATATACATCTGATTATGGTCATACTATCCGATGGGGTAATTCAAACTCTGGACAAAATAAGTTGGTGACAAAAGAAATATACACTTCTCAATTTAACCGATTTCGTAATTTGGCGGTAGATTCATTATCTGGAAATGTATTTGCCTGGGAAGAGGCCTTTGGGAAAATTATGGTATTCAATCCAAATAAACCAAATATTCATTATACACNTTGAAAGTTTACATAGCTTAACTTCTTCTGAACAACAGAATTTCGCTGGACTAGCTNTGCATTCCACATTAGGTCTAATGTACTGGNGC-ATATACACAGACGGTTGGAGACCGAATGGTACAATTCAAGTAGCTTCAATGTCTGGTGAAAATGAGGAGCAATTATTACAATTAACTGGTGAACCACTGGCAATTAGTATATCACCTGCAACACCAGTTAATGGTAATTCCGCTGGAAAATTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACATTGTGCACGATTAGGTCAAACGGGAAGAGAGATATTAA-CCAATGAAAAGATAAGAGAATTTAGTCCTTCTGAAGAACCATCGTTTGGTATGACACAGTATAAAGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGC]
[+] EMBL CD082760 [CCTCGAGGGCCANAATTCGGCACGAGGTAAAACTAGACAACAAGACGGCTATGAAATTTCTCTGCTCATAAATCAACCTACAATAACTGATAGTGGAAGGTATGAGTGCCGTGCAGGGAATGTTGCTGCTTTCATAGATGTAAATGTGGAAGAATCAGCAATTCCATTCACTGTGCTACTTACAAGTGATGATGGGATTCTAATGACACAATCTACCGATTCAAATGTAACCAAAGCTACTCTATGGAATATTGCTGAAAATAACAAGTATGGACGTGTCTCCATGGTTGGTGATTGTAATAGTCAACGAATTATATATACATCTGATTATGGTCATACTATCCGATGGGGTAATTCAAACTCTGGACAAAATAAGTTGGTGACAAAAGAAATATACACTTCTCAATTTAACCGATTTCGTAATTTGGCGGTAGATTCATTATCTGGAAATGTATTTGCCTGGGAAGAGGCCTTTGGGAAAATTATGGTATTCAATCCAAATAAACCAAATATTCATTATACACNTTGAAAGTTTACATAGCTTAACTTCTTCTGAACAACAGAATTTCGCTGGACTAGCTNTGCATTCCACATTAGGTCTAATGTACTGGNGC ATATACACAGACGGTTGG ]
[+] EMBL AI021787 [ TCTGAACAACAGAATTTCGCTGGACTAGCTTTGCATTCCACATTAGGTCTAATGTACTGG GCAATATACACAGACGGTTGGAGACCGAATGGTACAATTCAAGTAGCTTCAATGTCTGGTG AAATGAGGAGCAATTATTACAATTAACTGGTGAA CACTGGCAATTAGTATATCACCTGC ACACCAGTTAATGGTAATTCCGCTGGAAAATTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACATTGTGCACGATTAGGTCAAACGGG AGAGAGATTTTAACCCACTG AAAGAT AGAG ATTTAGTCCTTCTG AGAA ]
[+] EMBL CD169325 [ TAGCTTCAATGTCTGGTGAAAATGAGGAGCAATTATTACAATTAACTGGTGAACCACTGGCAATTAGTATATCACCTGCAACACCAGTTAATGGTAATTCCGCTGGAAAATTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACATTGTGCACGATTAGGTCAAACGGGAAGAGAGATATTAA CCAATGAAAAGATAAGAGAATTTAGTCCTTCTGAAGAACCATCGTTTGGTATGACACAGTATAAAGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGC]
[+] EMBL CD169324 [ TAGCTTCAATGTCTGGTGAAAATGAGGAGCAATTATTACAATTAACTGGTGAACCACTGGCAATTAGTATATCACCTGCAACACCAGTTAATGGTAATTCCGCTGGAAAATTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACATTGTGCACGATTAGGTCAAACGGGAAGAGAGATATTAA CCAATGAAAAGATAAGAGAATTTAGTCCTTCTGAAGAACCATCGTTTGGTATGACACAGTATAAAGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGC]
consensusID : consensus_9524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 919 fasta sequence
[CTCGAGGCCAAAAATTCGGCACGAGGGCAACACCAGTTAATGGTAATTCCGCTGGAAAATTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACATTGTGCACGATTAGGTCAAACGGGAAGAGAGATATTAACCAATGAAAAGATAAGAGAATTTAGTCCTTCTGAAGAACCATCGTTTGGTATGACACAGTATAAAGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGCTTCAACTAATCCATGTACTTATTCTAATGGACGATGTCGTTATATTTGCTTACCGAATGATGGTGGTAGATCTCGTACATGTGTATGTCCCGATAATGAGCCTGGATGTCATAAAGAAATGTAAAATGTATCAGTTATAATTAAATGAAATGACAATATCATTTTATCCCAGTTTATATTTTTCAATTTTCATTAACCTAATATTTATGTTACTGATTTGTTAGGAAATTGAAATTTTGAATTTTCCTTCACAATTTCAATATCATATGTTACATTTAAACATTCATAAAAGTTGTTTACACTTAGAATTAAAACATTATTAGGAAAGGTTTATTCTTGAAATATCAATCTTTGTATTACATTTAATCATATTTGCATGTTGTATTTTATCTATATGAATTTGAAGAGTTACAATTGATGAAATAGGTTATATTATCTGAAATAATTTTATCTAATTAACCTCATTCATGAACTTAAAGCTGATATATATGAACTGAATACTTCTCTTAGAATTAGTTTTTTGTGTAATATTTAAACTTTGATGTTACTATATCCTAATAAATTATA]
[+] EMBL CD080477 [CTCGAGGCCAAAAATTCGGCACGAGGGCAACACCAGTTAATGGTAATTCCGCTGGAAAATTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACATTGTGCACGATTAGGTCAAACGGGAAGAGAGATATTAACCAATGAAAAGATAAGAGAATTTAGTCCTTCTGAAGAACCATCGTTTGGTATGACACAGTATAAAGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGCTTCAACTAATCCATGTACTTATTCTAATGGACGATGTCGTTATATTTGCTTACCGAATGATGGTGGTAGATCTCGTACATGTGTATGTCCCGATAATGAGCCTGGATGTCATAAAGAAATGTAAAATGTATCAGTTATAATTAAATGAAATGACAATATCATTTTATCCCAGTTTATATTTTTCAATTTTCATTAACCTAATATTTATGTTACTGATTTGTTAGGAAATTGAAATTNTGAATTTTCCTTCACAATTTCAATATCATATGTTACATTTAAACATTCATAAAAGNTGTTTACACTTAGAATT ]
[-] EMBL CD177759 [ CGTTTGGTGTGACACAGTATAAAGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGCTTCAACTAATCCATGTACTTATTCTAATGGACGATGTCGTTATATTTGCTTACCGAATGAT GTGGTAGATCTCGTACATGTGTATGTC ]
[+] EMBL AA931041 [ AGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAG AC AGGTGATTGTCCACAAGCTTCAACTAATCCATGTACTTATTCTAATG ]
[+] EMBL SM0201 [ AGGAACATTATTGTGGACAGACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCAG AC AGGTGATTGTCCACAAGCTTCAACTAATCCATGTACTTATTCTAATG ]
[-] EMBL CD074388 [ CCACAAGCTTCAACTAATCCATGTACTTATTCTAATGGACGATGTCGTTATATTTGCTTACCGAATGATGGTGGTAGATCTCGTACATGTGTATGTCCCGATAATGAGCCTGGATGTCATAAAGAAATGTAAAATGTATCAGTTATAATTAAATGAAATGACAATATCATTTTATCCCAGTTTATATTTTTCAATTTTCATTAACCTAATATTTATGTTACTGATTTGTTAGGAAATTGAAATTTTGAATTTTCCTTCACAATTTCAATATCATATGTTACATTTAAACATTCATAAAAGTTGTTTACACTTAGAATTAAAACATTATTAGGAAAGGTTTATTCTTGAAATATCAATCTTTGTATTACATTTAATCATATTTGCATGTTGTATTTTATCTATATGAATTTGAAGAGTTACAATTGATGAAATAGGTTATATTATCTGAAATAATTTTATCTAATTAACCTCATTCATGAACTTAAAGCTGATATATATGAACTGAATACTTCTCTTAGAATTAGTTTTTTGTGTAATATTTAAACTTTGATGTTACTATATCCTAATAAATTATA]
[-] EMBL CD076351 [ CTTCAACTAATCCATGTACTTATTCTAATGGACGATGTCGTTATATTTGCTTACCGAATGATGGTGGTAGATCTCGTACATGTGTATGTCCCGATAATGAGCCTGGATGTCATAAAGAAATGTAAAATGTATCAGTTATAATTAAATGAAATGACAATATCATTTTATCCCAGTTTATATTTTTCAATTTTCATTAACCTAATATTTATGTTACTGATTTGTTAGGAAATTGAAATTTTGAATTTTCCTTCACAATTTCAATATCATATGTTACATTTAAACATTCATAAAAGTTGTTTACACTTAGAATTAAAACATTATTAGGAAAGGTTTATTCTTGAAATATCAATCTTTGTATTACATTTAATCATATTTGCATGTTGTATTTTATCTATATGAATTTGAAGAGTTACAATTGATGAAATAGGTTATATTATCTGAAATAATTTTATCTAATTAACCTCATTCATGAACTTAAAGCTGATATATATGAACTGAATACTTCTCTTAGAATTAGTTTTTTGTGTAATATTTAAACTTTGATGTTACTATATCCTAATAAATTATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9524#0 CCTCGAGGGCCANAATTCGGCACGAGG-TAAAACTAGACAACAAGA---CGGCTATGAAA 56
consensus_9524#1 -CTCGAGGCCAAAAATTCGGCACGAGGGCAACACCAGTTAATGGTAATTCCGCTGGAAAA 59
******* * * ************** ** ** ** ** * * *** ***
consensus_9524#0 TTTCTCTGCTCATAAATCAACCTACAATAACTGATAGTGGAAGGTA-TGAGTGCCGTGCA 115
consensus_9524#1 TTATGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCACTGAATTACAT-TG 118
** *** *** ** * ** * * ** * *** * * *
consensus_9524#0 GGGAATGTTGCTGCTTTCATAGATGTAAATGTGGAAGAATCAGCAATTCCATTCACTGTG 175
consensus_9524#1 TGCACGATTAGGTCAAACGGGAAGAGAGATATTAACCAATGAA-AAGATAAGAGAATTTA 177
* * ** * * * * ** * * *** * ** * * * *
consensus_9524#0 CTACTTACAAGTGATGATGGGATTCTAATGACACAATCTACCGATTCAAATGTAACCAAA 235
consensus_9524#1 GTCCTTCTGAAGAACCATCGT-TTGGTATGACACAGTATAAAGGAACATTATTGTGGACA 236
* *** * * ** * ** ******** * ** * ** * * *
consensus_9524#0 GCTACTCTATGGAATATTGCTGAAAATAACAAGTATGGACGTGTCTCCATGGTTGGTGAT 295
consensus_9524#1 GACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCG---CCGAATACGTGTCCGT 293
* ** * ** ** * * ** *** ** ** * ** ** *
consensus_9524#0 TGTAATAGTCAA-CGAATTATATATACATCTGATTATGGTCATACTATCCGATGGGGTAA 354
consensus_9524#1 TATGTCTGTTGTTCTAATCGTTTCCAAGCCTTATCA-----GTACTAGGTGATTGTCCA- 347
* * ** * *** * * * ** ** * ***** *** * *
consensus_9524#0 TTCAAACTCTGGACAAAATAAGTTGGTGACAAAAGAAATATACACTTCTCAATTTAACCG 414
consensus_9524#1 --CAAGCTTCAACTAATCCATGTACTTATTCTAATGGACG-ATGTCGTTATATTTGCT-- 402
*** ** ** * ** * ** * * * ****
consensus_9524#0 ATTTCGTAATTTGGCGGTAGATTCATTATCTGGAAATGTATTTGCCTGGGA---AGAGGC 471
consensus_9524#1 -TACCGAATGATGGTGGTAGATCTCGTACATGTGTATGTCCCGATAATGAGCCTGGATGT 461
* ** * *** ******* ** ** **** * ** *
consensus_9524#0 CTTTGGGAAAATTATGGTAT-TCAATC-CAAATAAACCAAATATTCATTATACACNTTGA 529
consensus_9524#1 CATAAAGAAATGTAAAATGTATCAGTTATAATTAAATGAAATGACAATATCATTTTATCC 521
* * **** ** * * *** * ** **** **** ** * *
consensus_9524#0 AAGTTTACATAGCTTAACTTCTTCTGAACAACAGAATTTCGCTG--GACTAGCTNTGCAT 587
consensus_9524#1 CAGTTTATATTTTTCAATTTTCATTAACCTA-ATATTTATGTTACTGATTTGTTAGGAAA 580
****** ** * ** ** * * * * * * ** * * ** * * * * *
consensus_9524#0 TCCACATTAGGTCTAATGTACTGGNGCATATACACAGACGGTTGGAGACCGAATGGTACA 647
consensus_9524#1 TTGAAATT---TTGAATTTTCCTTCACA-----------ATTTCAATATCATATGTTACA 626
* * *** * *** * * ** ** * * * *** ****
consensus_9524#0 ATTCAAGTAGCTTCAATGTCTGGTGAAAATGAGGAGCAATTATTACAATTAACTGGTGAA 707
consensus_9524#1 -TTTAAACATTCATAAAAGTTGTTTACACTTAGAATTAA--AACATTATTAG-----GAA 678
** ** * ** ** * * * * ** * ** * * **** ***
consensus_9524#0 CCACTGGCAATTAGTATATCACCTGCAACACCAGTTAATGGTAATTCCGCTGGAAAATTA 767
consensus_9524#1 AGGTTTATTCTTGAAATATCAATCTTTGTA----TTACATTTAATCATATTTGCATGTTG 734
* ** ****** * *** **** * * * **
consensus_9524#0 TGCTGGATGCAAAGATCTTCTAAAGGAATGTTTGGATTAGTCAC-TGAATTACATTGTGC 826
consensus_9524#1 TATTTTATCTATATGAATTTGAAGA----GTTACAATTGATGAAATAGGTTATATTATCT 790
* * ** * * ** ** *** *** * * * *** *** *
consensus_9524#0 ACGATTAGGTCAAACGGGAAGAGAGAT--ATTAACC-AATGAAAAGATAAGAGAATTTAG 883
consensus_9524#1 GAAATAATTTTATCTAATTAACCTCATTCATGAACTTAAAGCTGATATATATGAACTGAA 850
** * * * * ** ** *** ** * * *** *** * *
consensus_9524#0 TCCTTCTGA-AGAACCATCGTTTGGTATGACACAGTATAAAGGAACATTATTGTGGACAG 942
consensus_9524#1 TACTTCTCTTAGAATTAGTTTTTTGTGTAATATT-TAAACTTTGATGTTACTATATCCTA 909
* ***** **** * *** ** * * * ** * * *** * * *
consensus_9524#0 ACGCTACAAAGACAGTTTATTACTCTATCAATCCTGATCGCCGAATACGTGTCCGTTATG 1002
consensus_9524#1 ATAAATTATA-------------------------------------------------- 919
* * *
consensus_9524#0 TCTGTTGTTCTAATCGTTTCCAAGCCTTATCAGTACTAGGTGATTGTCCACAAGC 1057
consensus_9524#1 -------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||