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Schistosoma mansoni
cluster # 9527 cluster # 9527       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9527#0 length = 844 sequences # 6  
consensus_9527#1 length = 381 sequences # 3  
consensus_9527#2 length = 303 sequences # 1  

consensusID : consensus_9527#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 844
fasta sequence
                              [TATTGGTCTTTATATTTACAATTTGTACATAGAACATATACAATTATTTGGTTTCTAACGAAATGATCATGTGCGAGCTCCAAACCTTGGATGTGAATCCTCCTGAAGATATTAATTATCAAAAGCATTAATTCGATAATAATAAACTTTTTTCATCTGGTTTTGCTTTAGCTCCTCTAGCAAATTGAACAACCATCGGACGATCATATAGCATATAACCATTTGTAGCTTCCAACGCTTGTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTC-ACGGTGGTTGTGATGGTAAGGGAATCAAATCTTCCAAGTTTTCATGTTCTTCATCAGAAAATTGTTCTTTACGGAGCTGGAAATTAGAAAAGATTGATGCATGGTTTTTCTGAAAATTCTGGGTTGTTTCGTCAAGAAAATACCGTCTCTTTATTTTAGTCTCTGTATGGATAAGTCCGAACCCACCTTCAGATTCATCACGTGAATTACTATGATCCCGAGATTGCAAGGGTCCGAGC]

[+] EMBL CD073604             [TATTGGTCTTTATATTTACAATTTGTACATAGAACATATACAATTATTTGGTTTCTAACGAAATGATCATGTGCGAGCTCCAAACCTTGGATGTGAATCCTCCTGAAGATATTAATTATCAAAAGCATTAATTCGATAATAATAAACTTTTTTCATCTGGTTTTGCTTTAGCTCCTCTAGCAAATTGAACAACCATCGGACGATCATATAGCATATAACCATTTGTAGCTTCCAACGCTTGTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTC ACGGTGGTTGTGATGGTAAGGG                                                                                                                                                                                                                         ]
[+] EMBL CD075360             [TATTGGTCTTTATATTTACAATTTGTACATAGAACATATACAATTATTTGGTTTCTAACGAAATGATCATGTGCGAGCTCCAAACCTTGGATGTGAATCCTCCTGAAGATATTAATTATCAAAAGCATTAATTCGATAATAATAAACTTTTTTCATCTGGTTTTGCTTTAGCTCCTCTAGCAAATTGAACAACCATCGGACGATCATATAGCATATAACCATTTGTAGCTTCCAACGCTTGTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTC Aac                                                                                                                                                                                                                                            ]
[-] EMBL CD184510             [                                                                                                                                                                                                                                             CTTGTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTCAACGGTGGTTGTGATGGTAAGGGAATCAAATCTTCCAAGTTTTCATG                                                                                                                                                                                                 ]
[-] EMBL CD140045             [                                                                                                                                                                                                                                                                                                          AGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACC                                                                                                                                                                                                                                                    ]
[-] EMBL CD063527             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTCAACGGTGGTTGTGATGGTAAGGGAATCAAATCTTCCAAGTTTTCATGTTCTTCATCAGAAAATTGTTCTTTACGGAGCTGGAAATTAGAAAAGATTGATGCATGGTTTTTCTGAAA                                                                                                                            ]
[-] EMBL CD062671             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGTTTTCATGTTCTTCATCAGAAAATTGTTCTTTACGGAGCTGGAAATTAGAAAAGATTGATGCATGGTTTTCTTGAAAATTCTGGGTTGTTTCGTCAAGAAAATACCGTCTCTTTATTTTAGTCTCTGTATGGATAAGTCCGAACCCACCTTCAGATTCATCACGTGAATTACTATGATCCCGAGATTGCAAGGGTCCGAGC]


>consensus_9527#0 TATTGGTCTTTATATTTACAATTTGTACATAGAACATATACAATTATTTGGTTTCTAACG AAATGATCATGTGCGAGCTCCAAACCTTGGATGTGAATCCTCCTGAAGATATTAATTATC AAAAGCATTAATTCGATAATAATAAACTTTTTTCATCTGGTTTTGCTTTAGCTCCTCTAG CAAATTGAACAACCATCGGACGATCATATAGCATATAACCATTTGTAGCTTCCAACGCTT GTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAG TCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTAC TGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAA CCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAG CAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAA GGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCAC CACTCACGGTGGTTGTGATGGTAAGGGAATCAAATCTTCCAAGTTTTCATGTTCTTCATC AGAAAATTGTTCTTTACGGAGCTGGAAATTAGAAAAGATTGATGCATGGTTTTTCTGAAA ATTCTGGGTTGTTTCGTCAAGAAAATACCGTCTCTTTATTTTAGTCTCTGTATGGATAAG TCCGAACCCACCTTCAGATTCATCACGTGAATTACTATGATCCCGAGATTGCAAGGGTCC GAGC



consensusID : consensus_9527#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 381
fasta sequence
                              [CGCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATAGGAAGAAACGCGCGTCCTGGATTCCACTGCTAGCCACTATCCATCTCTGCTTAATAACTATTTATGCTAAAAATCTACTCTTTTTTTCAACTACACATTATTATAGTAGTAGATCGAAGAATAGCTTCAAAACACCTGGGATAGCATTGTCTGAACATGAATCGTCAACGCAGGGTAGGTTGAGCGTAAGAACAAATTGTTTTTGTACACATAAAGGGGGCTTCGATTTCCGTATAGCCGAGGCTTCAATAAACCTTAGTATATGTCCTTGAAGGCTTTTGTCAACCTTAGGACCAGTTTTAACCAAATATTTCGCAATGGAGGAAGATGTCTGTCTATCCTGC]

[+] EMBL CD060731             [CGCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATAGGAAGAAACGCGCGTCCTGGATTCCACTGCTAGCCACTATCCATCTCTGCTTAATAACTATTTATGCTAAAAATCTACTCTTTTTTTCAACTACACATTATTATAGTAGTAGATCGAAGAATAGCTTCAAAACACCTGGGATAGCATTGTCTGAACATGAATCGTCAACGCAGGGTAGGTTGAGCGTAAGAACAAATTGTTTTTGTACACATAAAGGGGGCTTCGATTTCCGTATAGCCGAGGCTTCAATAAACCTTAGTATATGTCCTTGAAGGCTTTTGTCAACCTTAGGACCAGTTTTAACCAAATATTTCGCAATGGAGGAAGATGTCTGTCTATCCTGC]
[+] EMBL CD060760             [CGCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATAGGAAGAAACGCGCGTCCTGGATTCCACTGCTAGCCACTATCCATCTCTGCTTAATAACTATTTATGCTAAAAATCTACTCTTTTTTTCAACTACACATTATTATAGTAGTAGATCGAAGAATAGCTTCAAAACACCTGGGATAGCATTGTCTGAACATGAATCGTCAACGCAGGGTAGGTTGAGCGTAA                                                                                                                                                           ]
[+] EMBL CD061069             [ GCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATAGGAAGAAACGCTCGTCCTGGATTCCACTGCTAGCCACTATCCATCTCTGCTTAATAACTATTTATGCTAAAAATCTACTCTTTTTTTCAACTACACATTATTATAGTAGTAGATCGAAGAATAGCTTCAAAACACCTGCGATAGCATTGTCTGAACATGAATCGTCAACGCAGGGTAGGTTGAGCGTAAGAACAAATTGTTTTTGTACACATAAAGGGGGCTTCGATTTCCGTATAGCCGAGGCTTCAATAAACCTTAATATATGTCCTTGAAGGCTTTTGTCAACCTTAGGACCAGTTTTAACCAAATATTTCGCAATGGAGGAAGAT               ]


>consensus_9527#1 CGCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATAGGAAGAAACGCGCGTCCTGGATT CCACTGCTAGCCACTATCCATCTCTGCTTAATAACTATTTATGCTAAAAATCTACTCTTT TTTTCAACTACACATTATTATAGTAGTAGATCGAAGAATAGCTTCAAAACACCTGGGATA GCATTGTCTGAACATGAATCGTCAACGCAGGGTAGGTTGAGCGTAAGAACAAATTGTTTT TGTACACATAAAGGGGGCTTCGATTTCCGTATAGCCGAGGCTTCAATAAACCTTAGTATA TGTCCTTGAAGGCTTTTGTCAACCTTAGGACCAGTTTTAACCAAATATTTCGCAATGGAG GAAGATGTCTGTCTATCCTGC



consensusID : consensus_9527#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence
                              [TATATCCCTAAGTTTACATTAAAATAACCCGATAAACAAAGTAACTGATACGATTGGGGATGCTGTTACAAACTGTAGTCAACAACTAAATTCACTTGGTATTATTTGTCTGAATCTTCCCATTGATGTTCAGGACTCAGTAGCTGAGTGGATAACGCGATGGCGTTTGAAGCGAAAGGTACTGGGTTCCAGTCCTAGAGTGAACATCAACTCTGAGATGCAGGTAAATCCAGCGGACCAGTCCCAAATAGGATGAAACGCGCGTCCTGGATCCCACTGCTAGCCACTATCCATCTTTACTTA]

[+] EMBL CD113923             [TATATCCCTAAGTTTACATTAAAATAACCCGATAAACAAAGTAACTGATACGATTGGGGATGCTGTTACAAACTGTAGTCAACAACTAAATTCACTTGGTATTATTTGTCTGAATCTTCCCATTGATGTTCAGGACTCAGTAGCTGAGTGGATAACGCGATGGCGTTTGAAGCGAAAGGTACTGGGTTCCAGTCCTAGAGTGAACATCAACTCTGAGATGCAGGTAAATCCAGCGGACCAGTCCCAAATAGGATGAAACGCGCGTCCTGGATCCCACTGCTAGCCACTATCCATCTTTACTTA]


>consensus_9527#2 TATATCCCTAAGTTTACATTAAAATAACCCGATAAACAAAGTAACTGATACGATTGGGGA TGCTGTTACAAACTGTAGTCAACAACTAAATTCACTTGGTATTATTTGTCTGAATCTTCC CATTGATGTTCAGGACTCAGTAGCTGAGTGGATAACGCGATGGCGTTTGAAGCGAAAGGT ACTGGGTTCCAGTCCTAGAGTGAACATCAACTCTGAGATGCAGGTAAATCCAGCGGACCA GTCCCAAATAGGATGAAACGCGCGTCCTGGATCCCACTGCTAGCCACTATCCATCTTTAC TTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9527#1      -----------------------CGCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATA 37
consensus_9527#2      ----------------------------------TATATCCCTAAGTTTACATTAAAATA 26
consensus_9527#0      TATTGGTCTTTATATTTACAATTTGTACATAGAACATATACAATTATTTGGTTTCTAACG 60
                                                         * ** *               **  

consensus_9527#1      GGAAGAA-ACGCGC--GTCCTGGATTCCACTGCTAGCCACTAT--CCATCTCTGCTTAAT 92
consensus_9527#2      ACCCGAT-AAACAAA-GTAACTGATACGATTGG-GGATGCTGTTACAAACTGTAGTCAAC 83
consensus_9527#0      AAATGATCATGTGCGAGCTCCAAACCTTGGATGTGAATCCTCCTGAAGATATTAATTATC 120
                          **  *       *      *               **           *  * *  

consensus_9527#1      AAC----TATTTATGCTAAAAATCTACTCTTTTTTTCAA-CTACACATTATTATAGTAGT 147
consensus_9527#2      AAC----TAAATTCACTTGG----TATTATTTGTCTGAATCTTCCCATTG--ATGTTCAG 133
consensus_9527#0      AAAAGCATTAATTCGATAATAATAAACTTTTTTCATCTGGTTTTGCTTTAGCTCCTCTAG 180
                      **     *   *    *        * * ***   *     *   * **           

consensus_9527#1      --AGATCGAAGAATA--GCTTCAAAACACCTGGGATAGCATTGTCTGAACATGAATCGTC 203
consensus_9527#2      --GACTCAGTAGCTG--AGTGGATAACGC----GATGGCGTT---TGAA-GCGAAAGGT- 180
consensus_9527#0      CAAATTGAACAACCATCGGACGATCATATAGCATATAACCATTTGTAGCTTCCAACGCTT 240
                           *                *  *        **  *  *   *       **   * 

consensus_9527#1      AACGCAGGGTAGGTTGA-GCGTAAGA---ACAAATTGTTTTTGTACACATAAAGGGGGCT 259
consensus_9527#2      ---ACTGGGT---TCCA-GTCCTAGA---GTGAACATCAACTCTG-AGATGCAGGTAAAT 229
consensus_9527#0      GTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAG 300
                             ***   *  *      **       **         *     *  *       

consensus_9527#1      TCGATTTCCGTATAGCCGAGGCTTCAATAAACCTTAGTATATGTCCTTG---AAGGCTTT 316
consensus_9527#2      CCAGC--------GGACCAGTCCCAAATAGGATGAAACGCGCGTCCT-G---GATCCCAC 277
consensus_9527#0      TCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTAC 360
                       *            *   *        *       *        * * *       *   

consensus_9527#1      TGTCAACCTTAGGACCAGTTTTAACCAAATATTTCGCAATGGAGGAAGATGTCTGTCTAT 376
consensus_9527#2      TGCTAGCC--ACTATCCATCTTTACTTA-------------------------------- 303
consensus_9527#0      TGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAA 420
                      **  *  *  *    *  *    *                                    

consensus_9527#1      CCTGC------------------------------------------------------- 381
consensus_9527#2      ------------------------------------------------------------
consensus_9527#0      CCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAG 480
                                                                                  

consensus_9527#1      ------------------------------------------------------------
consensus_9527#2      ------------------------------------------------------------
consensus_9527#0      CAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAA 540
                                                                                  

consensus_9527#1      ------------------------------------------------------------
consensus_9527#2      ------------------------------------------------------------
consensus_9527#0      GGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCAC 600
                                                                                  

consensus_9527#1      ------------------------------------------------------------
consensus_9527#2      ------------------------------------------------------------
consensus_9527#0      CACTCACGGTGGTTGTGATGGTAAGGGAATCAAATCTTCCAAGTTTTCATGTTCTTCATC 660
                                                                                  

consensus_9527#1      ------------------------------------------------------------
consensus_9527#2      ------------------------------------------------------------
consensus_9527#0      AGAAAATTGTTCTTTACGGAGCTGGAAATTAGAAAAGATTGATGCATGGTTTTTCTGAAA 720
                                                                                  

consensus_9527#1      ------------------------------------------------------------
consensus_9527#2      ------------------------------------------------------------
consensus_9527#0      ATTCTGGGTTGTTTCGTCAAGAAAATACCGTCTCTTTATTTTAGTCTCTGTATGGATAAG 780
                                                                                  

consensus_9527#1      ------------------------------------------------------------
consensus_9527#2      ------------------------------------------------------------
consensus_9527#0      TCCGAACCCACCTTCAGATTCATCACGTGAATTACTATGATCCCGAGATTGCAAGGGTCC 840
                                                                                  

consensus_9527#1      ----
consensus_9527#2      ----
consensus_9527#0      GAGC 844
                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)