These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9527#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 844 fasta sequence [TATTGGTCTTTATATTTACAATTTGTACATAGAACATATACAATTATTTGGTTTCTAACGAAATGATCATGTGCGAGCTCCAAACCTTGGATGTGAATCCTCCTGAAGATATTAATTATCAAAAGCATTAATTCGATAATAATAAACTTTTTTCATCTGGTTTTGCTTTAGCTCCTCTAGCAAATTGAACAACCATCGGACGATCATATAGCATATAACCATTTGTAGCTTCCAACGCTTGTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTC-ACGGTGGTTGTGATGGTAAGGGAATCAAATCTTCCAAGTTTTCATGTTCTTCATCAGAAAATTGTTCTTTACGGAGCTGGAAATTAGAAAAGATTGATGCATGGTTTTTCTGAAAATTCTGGGTTGTTTCGTCAAGAAAATACCGTCTCTTTATTTTAGTCTCTGTATGGATAAGTCCGAACCCACCTTCAGATTCATCACGTGAATTACTATGATCCCGAGATTGCAAGGGTCCGAGC] [+] EMBL CD073604 [TATTGGTCTTTATATTTACAATTTGTACATAGAACATATACAATTATTTGGTTTCTAACGAAATGATCATGTGCGAGCTCCAAACCTTGGATGTGAATCCTCCTGAAGATATTAATTATCAAAAGCATTAATTCGATAATAATAAACTTTTTTCATCTGGTTTTGCTTTAGCTCCTCTAGCAAATTGAACAACCATCGGACGATCATATAGCATATAACCATTTGTAGCTTCCAACGCTTGTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTC ACGGTGGTTGTGATGGTAAGGG ] [+] EMBL CD075360 [TATTGGTCTTTATATTTACAATTTGTACATAGAACATATACAATTATTTGGTTTCTAACGAAATGATCATGTGCGAGCTCCAAACCTTGGATGTGAATCCTCCTGAAGATATTAATTATCAAAAGCATTAATTCGATAATAATAAACTTTTTTCATCTGGTTTTGCTTTAGCTCCTCTAGCAAATTGAACAACCATCGGACGATCATATAGCATATAACCATTTGTAGCTTCCAACGCTTGTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTC Aac ] [-] EMBL CD184510 [ CTTGTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTCAACGGTGGTTGTGATGGTAAGGGAATCAAATCTTCCAAGTTTTCATG ] [-] EMBL CD140045 [ AGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACC ] [-] EMBL CD063527 [ TGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTCAACGGTGGTTGTGATGGTAAGGGAATCAAATCTTCCAAGTTTTCATGTTCTTCATCAGAAAATTGTTCTTTACGGAGCTGGAAATTAGAAAAGATTGATGCATGGTTTTTCTGAAA ] [-] EMBL CD062671 [ AGTTTTCATGTTCTTCATCAGAAAATTGTTCTTTACGGAGCTGGAAATTAGAAAAGATTGATGCATGGTTTTCTTGAAAATTCTGGGTTGTTTCGTCAAGAAAATACCGTCTCTTTATTTTAGTCTCTGTATGGATAAGTCCGAACCCACCTTCAGATTCATCACGTGAATTACTATGATCCCGAGATTGCAAGGGTCCGAGC] consensusID : consensus_9527#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 381 fasta sequence [CGCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATAGGAAGAAACGCGCGTCCTGGATTCCACTGCTAGCCACTATCCATCTCTGCTTAATAACTATTTATGCTAAAAATCTACTCTTTTTTTCAACTACACATTATTATAGTAGTAGATCGAAGAATAGCTTCAAAACACCTGGGATAGCATTGTCTGAACATGAATCGTCAACGCAGGGTAGGTTGAGCGTAAGAACAAATTGTTTTTGTACACATAAAGGGGGCTTCGATTTCCGTATAGCCGAGGCTTCAATAAACCTTAGTATATGTCCTTGAAGGCTTTTGTCAACCTTAGGACCAGTTTTAACCAAATATTTCGCAATGGAGGAAGATGTCTGTCTATCCTGC] [+] EMBL CD060731 [CGCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATAGGAAGAAACGCGCGTCCTGGATTCCACTGCTAGCCACTATCCATCTCTGCTTAATAACTATTTATGCTAAAAATCTACTCTTTTTTTCAACTACACATTATTATAGTAGTAGATCGAAGAATAGCTTCAAAACACCTGGGATAGCATTGTCTGAACATGAATCGTCAACGCAGGGTAGGTTGAGCGTAAGAACAAATTGTTTTTGTACACATAAAGGGGGCTTCGATTTCCGTATAGCCGAGGCTTCAATAAACCTTAGTATATGTCCTTGAAGGCTTTTGTCAACCTTAGGACCAGTTTTAACCAAATATTTCGCAATGGAGGAAGATGTCTGTCTATCCTGC] [+] EMBL CD060760 [CGCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATAGGAAGAAACGCGCGTCCTGGATTCCACTGCTAGCCACTATCCATCTCTGCTTAATAACTATTTATGCTAAAAATCTACTCTTTTTTTCAACTACACATTATTATAGTAGTAGATCGAAGAATAGCTTCAAAACACCTGGGATAGCATTGTCTGAACATGAATCGTCAACGCAGGGTAGGTTGAGCGTAA ] [+] EMBL CD061069 [ GCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATAGGAAGAAACGCTCGTCCTGGATTCCACTGCTAGCCACTATCCATCTCTGCTTAATAACTATTTATGCTAAAAATCTACTCTTTTTTTCAACTACACATTATTATAGTAGTAGATCGAAGAATAGCTTCAAAACACCTGCGATAGCATTGTCTGAACATGAATCGTCAACGCAGGGTAGGTTGAGCGTAAGAACAAATTGTTTTTGTACACATAAAGGGGGCTTCGATTTCCGTATAGCCGAGGCTTCAATAAACCTTAATATATGTCCTTGAAGGCTTTTGTCAACCTTAGGACCAGTTTTAACCAAATATTTCGCAATGGAGGAAGAT ] consensusID : consensus_9527#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [TATATCCCTAAGTTTACATTAAAATAACCCGATAAACAAAGTAACTGATACGATTGGGGATGCTGTTACAAACTGTAGTCAACAACTAAATTCACTTGGTATTATTTGTCTGAATCTTCCCATTGATGTTCAGGACTCAGTAGCTGAGTGGATAACGCGATGGCGTTTGAAGCGAAAGGTACTGGGTTCCAGTCCTAGAGTGAACATCAACTCTGAGATGCAGGTAAATCCAGCGGACCAGTCCCAAATAGGATGAAACGCGCGTCCTGGATCCCACTGCTAGCCACTATCCATCTTTACTTA] [+] EMBL CD113923 [TATATCCCTAAGTTTACATTAAAATAACCCGATAAACAAAGTAACTGATACGATTGGGGATGCTGTTACAAACTGTAGTCAACAACTAAATTCACTTGGTATTATTTGTCTGAATCTTCCCATTGATGTTCAGGACTCAGTAGCTGAGTGGATAACGCGATGGCGTTTGAAGCGAAAGGTACTGGGTTCCAGTCCTAGAGTGAACATCAACTCTGAGATGCAGGTAAATCCAGCGGACCAGTCCCAAATAGGATGAAACGCGCGTCCTGGATCCCACTGCTAGCCACTATCCATCTTTACTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9527#1 -----------------------CGCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATA 37 consensus_9527#2 ----------------------------------TATATCCCTAAGTTTACATTAAAATA 26 consensus_9527#0 TATTGGTCTTTATATTTACAATTTGTACATAGAACATATACAATTATTTGGTTTCTAACG 60 * ** * ** consensus_9527#1 GGAAGAA-ACGCGC--GTCCTGGATTCCACTGCTAGCCACTAT--CCATCTCTGCTTAAT 92 consensus_9527#2 ACCCGAT-AAACAAA-GTAACTGATACGATTGG-GGATGCTGTTACAAACTGTAGTCAAC 83 consensus_9527#0 AAATGATCATGTGCGAGCTCCAAACCTTGGATGTGAATCCTCCTGAAGATATTAATTATC 120 ** * * * ** * * * consensus_9527#1 AAC----TATTTATGCTAAAAATCTACTCTTTTTTTCAA-CTACACATTATTATAGTAGT 147 consensus_9527#2 AAC----TAAATTCACTTGG----TATTATTTGTCTGAATCTTCCCATTG--ATGTTCAG 133 consensus_9527#0 AAAAGCATTAATTCGATAATAATAAACTTTTTTCATCTGGTTTTGCTTTAGCTCCTCTAG 180 ** * * * * * *** * * * ** consensus_9527#1 --AGATCGAAGAATA--GCTTCAAAACACCTGGGATAGCATTGTCTGAACATGAATCGTC 203 consensus_9527#2 --GACTCAGTAGCTG--AGTGGATAACGC----GATGGCGTT---TGAA-GCGAAAGGT- 180 consensus_9527#0 CAAATTGAACAACCATCGGACGATCATATAGCATATAACCATTTGTAGCTTCCAACGCTT 240 * * * ** * * * ** * consensus_9527#1 AACGCAGGGTAGGTTGA-GCGTAAGA---ACAAATTGTTTTTGTACACATAAAGGGGGCT 259 consensus_9527#2 ---ACTGGGT---TCCA-GTCCTAGA---GTGAACATCAACTCTG-AGATGCAGGTAAAT 229 consensus_9527#0 GTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAG 300 *** * * ** ** * * * consensus_9527#1 TCGATTTCCGTATAGCCGAGGCTTCAATAAACCTTAGTATATGTCCTTG---AAGGCTTT 316 consensus_9527#2 CCAGC--------GGACCAGTCCCAAATAGGATGAAACGCGCGTCCT-G---GATCCCAC 277 consensus_9527#0 TCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTAC 360 * * * * * * * * * consensus_9527#1 TGTCAACCTTAGGACCAGTTTTAACCAAATATTTCGCAATGGAGGAAGATGTCTGTCTAT 376 consensus_9527#2 TGCTAGCC--ACTATCCATCTTTACTTA-------------------------------- 303 consensus_9527#0 TGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAA 420 ** * * * * * * consensus_9527#1 CCTGC------------------------------------------------------- 381 consensus_9527#2 ------------------------------------------------------------ consensus_9527#0 CCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAG 480 consensus_9527#1 ------------------------------------------------------------ consensus_9527#2 ------------------------------------------------------------ consensus_9527#0 CAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAA 540 consensus_9527#1 ------------------------------------------------------------ consensus_9527#2 ------------------------------------------------------------ consensus_9527#0 GGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCAC 600 consensus_9527#1 ------------------------------------------------------------ consensus_9527#2 ------------------------------------------------------------ consensus_9527#0 CACTCACGGTGGTTGTGATGGTAAGGGAATCAAATCTTCCAAGTTTTCATGTTCTTCATC 660 consensus_9527#1 ------------------------------------------------------------ consensus_9527#2 ------------------------------------------------------------ consensus_9527#0 AGAAAATTGTTCTTTACGGAGCTGGAAATTAGAAAAGATTGATGCATGGTTTTTCTGAAA 720 consensus_9527#1 ------------------------------------------------------------ consensus_9527#2 ------------------------------------------------------------ consensus_9527#0 ATTCTGGGTTGTTTCGTCAAGAAAATACCGTCTCTTTATTTTAGTCTCTGTATGGATAAG 780 consensus_9527#1 ------------------------------------------------------------ consensus_9527#2 ------------------------------------------------------------ consensus_9527#0 TCCGAACCCACCTTCAGATTCATCACGTGAATTACTATGATCCCGAGATTGCAAGGGTCC 840 consensus_9527#1 ---- consensus_9527#2 ---- consensus_9527#0 GAGC 844 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||