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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9527#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 844 fasta sequence
[TATTGGTCTTTATATTTACAATTTGTACATAGAACATATACAATTATTTGGTTTCTAACGAAATGATCATGTGCGAGCTCCAAACCTTGGATGTGAATCCTCCTGAAGATATTAATTATCAAAAGCATTAATTCGATAATAATAAACTTTTTTCATCTGGTTTTGCTTTAGCTCCTCTAGCAAATTGAACAACCATCGGACGATCATATAGCATATAACCATTTGTAGCTTCCAACGCTTGTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTC-ACGGTGGTTGTGATGGTAAGGGAATCAAATCTTCCAAGTTTTCATGTTCTTCATCAGAAAATTGTTCTTTACGGAGCTGGAAATTAGAAAAGATTGATGCATGGTTTTTCTGAAAATTCTGGGTTGTTTCGTCAAGAAAATACCGTCTCTTTATTTTAGTCTCTGTATGGATAAGTCCGAACCCACCTTCAGATTCATCACGTGAATTACTATGATCCCGAGATTGCAAGGGTCCGAGC]
[+] EMBL CD073604 [TATTGGTCTTTATATTTACAATTTGTACATAGAACATATACAATTATTTGGTTTCTAACGAAATGATCATGTGCGAGCTCCAAACCTTGGATGTGAATCCTCCTGAAGATATTAATTATCAAAAGCATTAATTCGATAATAATAAACTTTTTTCATCTGGTTTTGCTTTAGCTCCTCTAGCAAATTGAACAACCATCGGACGATCATATAGCATATAACCATTTGTAGCTTCCAACGCTTGTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTC ACGGTGGTTGTGATGGTAAGGG ]
[+] EMBL CD075360 [TATTGGTCTTTATATTTACAATTTGTACATAGAACATATACAATTATTTGGTTTCTAACGAAATGATCATGTGCGAGCTCCAAACCTTGGATGTGAATCCTCCTGAAGATATTAATTATCAAAAGCATTAATTCGATAATAATAAACTTTTTTCATCTGGTTTTGCTTTAGCTCCTCTAGCAAATTGAACAACCATCGGACGATCATATAGCATATAACCATTTGTAGCTTCCAACGCTTGTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTC Aac ]
[-] EMBL CD184510 [ CTTGTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTCAACGGTGGTTGTGATGGTAAGGGAATCAAATCTTCCAAGTTTTCATG ]
[-] EMBL CD140045 [ AGTCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTACTGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAACCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAGCAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAAGGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACC ]
[-] EMBL CD063527 [ TGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCACCACTCAACGGTGGTTGTGATGGTAAGGGAATCAAATCTTCCAAGTTTTCATGTTCTTCATCAGAAAATTGTTCTTTACGGAGCTGGAAATTAGAAAAGATTGATGCATGGTTTTTCTGAAA ]
[-] EMBL CD062671 [ AGTTTTCATGTTCTTCATCAGAAAATTGTTCTTTACGGAGCTGGAAATTAGAAAAGATTGATGCATGGTTTTCTTGAAAATTCTGGGTTGTTTCGTCAAGAAAATACCGTCTCTTTATTTTAGTCTCTGTATGGATAAGTCCGAACCCACCTTCAGATTCATCACGTGAATTACTATGATCCCGAGATTGCAAGGGTCCGAGC]
consensusID : consensus_9527#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 381 fasta sequence
[CGCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATAGGAAGAAACGCGCGTCCTGGATTCCACTGCTAGCCACTATCCATCTCTGCTTAATAACTATTTATGCTAAAAATCTACTCTTTTTTTCAACTACACATTATTATAGTAGTAGATCGAAGAATAGCTTCAAAACACCTGGGATAGCATTGTCTGAACATGAATCGTCAACGCAGGGTAGGTTGAGCGTAAGAACAAATTGTTTTTGTACACATAAAGGGGGCTTCGATTTCCGTATAGCCGAGGCTTCAATAAACCTTAGTATATGTCCTTGAAGGCTTTTGTCAACCTTAGGACCAGTTTTAACCAAATATTTCGCAATGGAGGAAGATGTCTGTCTATCCTGC]
[+] EMBL CD060731 [CGCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATAGGAAGAAACGCGCGTCCTGGATTCCACTGCTAGCCACTATCCATCTCTGCTTAATAACTATTTATGCTAAAAATCTACTCTTTTTTTCAACTACACATTATTATAGTAGTAGATCGAAGAATAGCTTCAAAACACCTGGGATAGCATTGTCTGAACATGAATCGTCAACGCAGGGTAGGTTGAGCGTAAGAACAAATTGTTTTTGTACACATAAAGGGGGCTTCGATTTCCGTATAGCCGAGGCTTCAATAAACCTTAGTATATGTCCTTGAAGGCTTTTGTCAACCTTAGGACCAGTTTTAACCAAATATTTCGCAATGGAGGAAGATGTCTGTCTATCCTGC]
[+] EMBL CD060760 [CGCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATAGGAAGAAACGCGCGTCCTGGATTCCACTGCTAGCCACTATCCATCTCTGCTTAATAACTATTTATGCTAAAAATCTACTCTTTTTTTCAACTACACATTATTATAGTAGTAGATCGAAGAATAGCTTCAAAACACCTGGGATAGCATTGTCTGAACATGAATCGTCAACGCAGGGTAGGTTGAGCGTAA ]
[+] EMBL CD061069 [ GCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATAGGAAGAAACGCTCGTCCTGGATTCCACTGCTAGCCACTATCCATCTCTGCTTAATAACTATTTATGCTAAAAATCTACTCTTTTTTTCAACTACACATTATTATAGTAGTAGATCGAAGAATAGCTTCAAAACACCTGCGATAGCATTGTCTGAACATGAATCGTCAACGCAGGGTAGGTTGAGCGTAAGAACAAATTGTTTTTGTACACATAAAGGGGGCTTCGATTTCCGTATAGCCGAGGCTTCAATAAACCTTAATATATGTCCTTGAAGGCTTTTGTCAACCTTAGGACCAGTTTTAACCAAATATTTCGCAATGGAGGAAGAT ]
consensusID : consensus_9527#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence
[TATATCCCTAAGTTTACATTAAAATAACCCGATAAACAAAGTAACTGATACGATTGGGGATGCTGTTACAAACTGTAGTCAACAACTAAATTCACTTGGTATTATTTGTCTGAATCTTCCCATTGATGTTCAGGACTCAGTAGCTGAGTGGATAACGCGATGGCGTTTGAAGCGAAAGGTACTGGGTTCCAGTCCTAGAGTGAACATCAACTCTGAGATGCAGGTAAATCCAGCGGACCAGTCCCAAATAGGATGAAACGCGCGTCCTGGATCCCACTGCTAGCCACTATCCATCTTTACTTA]
[+] EMBL CD113923 [TATATCCCTAAGTTTACATTAAAATAACCCGATAAACAAAGTAACTGATACGATTGGGGATGCTGTTACAAACTGTAGTCAACAACTAAATTCACTTGGTATTATTTGTCTGAATCTTCCCATTGATGTTCAGGACTCAGTAGCTGAGTGGATAACGCGATGGCGTTTGAAGCGAAAGGTACTGGGTTCCAGTCCTAGAGTGAACATCAACTCTGAGATGCAGGTAAATCCAGCGGACCAGTCCCAAATAGGATGAAACGCGCGTCCTGGATCCCACTGCTAGCCACTATCCATCTTTACTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9527#1 -----------------------CGCAGGGCAGGTACATCCAGCTGAAGAGTCCCAAATA 37
consensus_9527#2 ----------------------------------TATATCCCTAAGTTTACATTAAAATA 26
consensus_9527#0 TATTGGTCTTTATATTTACAATTTGTACATAGAACATATACAATTATTTGGTTTCTAACG 60
* ** * **
consensus_9527#1 GGAAGAA-ACGCGC--GTCCTGGATTCCACTGCTAGCCACTAT--CCATCTCTGCTTAAT 92
consensus_9527#2 ACCCGAT-AAACAAA-GTAACTGATACGATTGG-GGATGCTGTTACAAACTGTAGTCAAC 83
consensus_9527#0 AAATGATCATGTGCGAGCTCCAAACCTTGGATGTGAATCCTCCTGAAGATATTAATTATC 120
** * * * ** * * *
consensus_9527#1 AAC----TATTTATGCTAAAAATCTACTCTTTTTTTCAA-CTACACATTATTATAGTAGT 147
consensus_9527#2 AAC----TAAATTCACTTGG----TATTATTTGTCTGAATCTTCCCATTG--ATGTTCAG 133
consensus_9527#0 AAAAGCATTAATTCGATAATAATAAACTTTTTTCATCTGGTTTTGCTTTAGCTCCTCTAG 180
** * * * * * *** * * * **
consensus_9527#1 --AGATCGAAGAATA--GCTTCAAAACACCTGGGATAGCATTGTCTGAACATGAATCGTC 203
consensus_9527#2 --GACTCAGTAGCTG--AGTGGATAACGC----GATGGCGTT---TGAA-GCGAAAGGT- 180
consensus_9527#0 CAAATTGAACAACCATCGGACGATCATATAGCATATAACCATTTGTAGCTTCCAACGCTT 240
* * * ** * * * ** *
consensus_9527#1 AACGCAGGGTAGGTTGA-GCGTAAGA---ACAAATTGTTTTTGTACACATAAAGGGGGCT 259
consensus_9527#2 ---ACTGGGT---TCCA-GTCCTAGA---GTGAACATCAACTCTG-AGATGCAGGTAAAT 229
consensus_9527#0 GTTTGGCGGTTAATTCACATGCAAGGCCGATGAATGCCTGACCTTTCATTCGACCTTCAG 300
*** * * ** ** * * *
consensus_9527#1 TCGATTTCCGTATAGCCGAGGCTTCAATAAACCTTAGTATATGTCCTTG---AAGGCTTT 316
consensus_9527#2 CCAGC--------GGACCAGTCCCAAATAGGATGAAACGCGCGTCCT-G---GATCCCAC 277
consensus_9527#0 TCAAAAGTCTTATTGAAAAACGCTCTGTTGAGTCCAACGAAACCCTTGGTTTGCAACTAC 360
* * * * * * * * *
consensus_9527#1 TGTCAACCTTAGGACCAGTTTTAACCAAATATTTCGCAATGGAGGAAGATGTCTGTCTAT 376
consensus_9527#2 TGCTAGCC--ACTATCCATCTTTACTTA-------------------------------- 303
consensus_9527#0 TGTCAGTCACAGGTCCATTTGAAAATACCCCGAATATTGCAAACAAATCGGTTTCTGTAA 420
** * * * * * *
consensus_9527#1 CCTGC------------------------------------------------------- 381
consensus_9527#2 ------------------------------------------------------------
consensus_9527#0 CCGTTTGAGATAAATTTTTGACATATAGACGGGAGGTGGCAGTTCCAGTATCATATTTAG 480
consensus_9527#1 ------------------------------------------------------------
consensus_9527#2 ------------------------------------------------------------
consensus_9527#0 CAAACACTGGGTAATTTCTGCGGTCCTCATCTTTCAGGCGATTGGATATGATTTCATCAA 540
consensus_9527#1 ------------------------------------------------------------
consensus_9527#2 ------------------------------------------------------------
consensus_9527#0 GGGACAGTACTGTTACGAAATTAGACGGGTTATTATCAGTAACATCTGTCATATTTTCAC 600
consensus_9527#1 ------------------------------------------------------------
consensus_9527#2 ------------------------------------------------------------
consensus_9527#0 CACTCACGGTGGTTGTGATGGTAAGGGAATCAAATCTTCCAAGTTTTCATGTTCTTCATC 660
consensus_9527#1 ------------------------------------------------------------
consensus_9527#2 ------------------------------------------------------------
consensus_9527#0 AGAAAATTGTTCTTTACGGAGCTGGAAATTAGAAAAGATTGATGCATGGTTTTTCTGAAA 720
consensus_9527#1 ------------------------------------------------------------
consensus_9527#2 ------------------------------------------------------------
consensus_9527#0 ATTCTGGGTTGTTTCGTCAAGAAAATACCGTCTCTTTATTTTAGTCTCTGTATGGATAAG 780
consensus_9527#1 ------------------------------------------------------------
consensus_9527#2 ------------------------------------------------------------
consensus_9527#0 TCCGAACCCACCTTCAGATTCATCACGTGAATTACTATGATCCCGAGATTGCAAGGGTCC 840
consensus_9527#1 ----
consensus_9527#2 ----
consensus_9527#0 GAGC 844
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||