cluster # 9528

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Schistosoma mansoni
cluster # 9528 cluster # 9528 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9528#0 length = 664 sequences # 3

consensus_9528#1 length = 350 sequences # 7

consensusID : consensus_9528#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 664
fasta sequence

                              [AATATTGCGAAAATGTTCACGAAATTGTTTTTTTAACACATTAGCTTCATTAATATCTCCAGTGAACAAAAGATGTTCATTAAAAATACTGCCTTCGTTTTGAATTATTTGTAAAAAATCTGTAACAACAGATCTAGTTTCCTTATCCATTTTCTCATCTCCTGTGAAATAAGTTTGTTTCATCAAATAAGGTGCAGCTTTAGCTAAAGCACGTAATTCCACCAAATAAGTGAAATAAAGATTACGCAATCGAGTTAAACCATCTGGTACAATGGATGGATCAAAACGACGACGAAATTCCTCTAAATTTGGACCCCAACCTGGATTGTTACTATCATAATCACGAGATATTGGTTGATGTCGTGAAAAAAGACTTAACGGATATCGATAAGATAAATGAACACTGATACTACTATGCAACCCAGACACCATTCGATAAAATGCGCGCTTTTCAAGACATGAAGATTGACTTGGACCAAGGTAACTTGTCCCGTAAGTTATTGAATCTTCATTGAAACAGTTTTCATTGTATACCATATACCATATTCTATTTGAAGCAGGTCCTTTGTAACCAGTATAACGTTCAGGATTCTTCAGTAAGTCCACATAAATCATTNTACCAGAGCTATCGTCATCAGGTTCACAGAATGTCAACTCATCTTCA]

[-] EMBL CD183873             [AATATTGCGAAAATGTTCACGAAATTGTTTTTTTAACACATTAGCTTCATTAATATCTCCAGTGAACAAAAGATGTTCATTAAAAATACTGCCTTCGTTTTGAATTATTTGTAAAAAATCTGTAACAACAGATCTAGTTTCCTTATCCATTTTCTCATCTCCTGTGAAATAAGTTTGTTTCATCAAATAAGGTGCAGCTTTAGCTAAAGCACGTAATTCCACCAAATAAGTGAAATAAAGATTACGCAATCGAGTTAAACCATCTGGTACAATGGATGGATCAAAACGACGACGAAATTCCTCTAAATTTGG                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD168460             [                                                                                                                                                                          AAGTTTGTTTCATCAAATAAGGTGCAGCTTTAGCTAAAGCACGTAATTCCACCAAATAAGTGAAATAAAGATTACGCAATCGAGTTAAACCATCTGGTACAATGGATGGATCAAAACGACGACGAAATTCCTCTAAATTTGGACCCCAACCTGGATTGTTACTATCATAATCACGAGATATTGGTTGATGTCGTGAAAAAAGACTTAACGGATATCGATAAGATAAATGAACACTGATACTACTATGCAACCCAGACACCATTCGATAAAATGCGCGCTTTTCAAGACATGAAGATTGACTTGGACCAAGGTAACTTGTCCCGTAAGTTATTGAATCTTCATTGAAACAGTTTTCATTGTATACCATATACCATATTCTATTTGAAGCAGGTCCTTTGTAACCAGTATAACGTTCAGGATTCTTCAGTAAGTCCACATAAATCATTNTACCAGAGCTATCGTCATCAGGTTCACAGAATGTCAACTCATCTTCA]
[+] EMBL CD168457             [                                                                                                                                                                          AAGTTCGTTTCATCAAATAAGGTGCAGCTTTAGCTAAAGCACGTAATTCCACCAAATAAGTGAAATAAAGATTACGCAATCGAGTTAAACCATCTGGTACAATGGATGGATCAAAACGACGACGAAATTCCTCTAAATTTGGACCCCAACCTGGATTGTTACTATCATAATCACGAGATATTGG                                                                                                                                                                                                                                                                                                                      ]




>consensus_9528#0
AATATTGCGAAAATGTTCACGAAATTGTTTTTTTAACACATTAGCTTCATTAATATCTCC
AGTGAACAAAAGATGTTCATTAAAAATACTGCCTTCGTTTTGAATTATTTGTAAAAAATC
TGTAACAACAGATCTAGTTTCCTTATCCATTTTCTCATCTCCTGTGAAATAAGTTTGTTT
CATCAAATAAGGTGCAGCTTTAGCTAAAGCACGTAATTCCACCAAATAAGTGAAATAAAG
ATTACGCAATCGAGTTAAACCATCTGGTACAATGGATGGATCAAAACGACGACGAAATTC
CTCTAAATTTGGACCCCAACCTGGATTGTTACTATCATAATCACGAGATATTGGTTGATG
TCGTGAAAAAAGACTTAACGGATATCGATAAGATAAATGAACACTGATACTACTATGCAA
CCCAGACACCATTCGATAAAATGCGCGCTTTTCAAGACATGAAGATTGACTTGGACCAAG
GTAACTTGTCCCGTAAGTTATTGAATCTTCATTGAAACAGTTTTCATTGTATACCATATA
CCATATTCTATTTGAAGCAGGTCCTTTGTAACCAGTATAACGTTCAGGATTCTTCAGTAA
GTCCACATAAATCATTNTACCAGAGCTATCGTCATCAGGTTCACAGAATGTCAACTCATC
TTCA

consensusID : consensus_9528#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 350
fasta sequence

                              [TGGAGAGCGAGCATTTATCGAATGGTGTCTGGGTTGCATAG-TA-G-TATCAGTGTTCATTTATCTTATCGATATCCGT-TAAG-TCGTAAGTTTTTATTTTTAGC-AAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGGTATCGTTTTGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTGCTATCAATTTTTATTAGTATCTGTCAGATTCTTGAGAGCATCAGACAAATATATATTTACAGAAAAACGGAATCCTCAATTATTTATTTTTAATCATAATCTAATCAAGGAGTGATGAACTA]

[+] EMBL CD126134             [TGGAGAGCGAGCATTTATCGAATGG G  TGGGTTGCATAG TA G TATCAGTG ACATTTATCTTATCGATATCCGT TAAG TCGTAAGTTTTTATTTTTAGCGAAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGATATCGTTTAGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTGCTATCAATTTTTATTAGTATCTGTCAGATTCTTGAGAGCATCAGACAAATATATATTTACAGAAAAACGGAATCCTCAATTATTTATTTTTAATCATAATCTAATCAAGGAGTGATGAACT ]
[+] EMBL CD125899             [            ATTTATCGAATGGTGTCTGG  TGCATAG TA G TATCAGTGTTCATTTATCTTATCGATATCCGT TAAG TCGTAAGTTTTTATTTTTAGC AAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGGTATCGTTTTGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTACTATCAATTTTTATTAGTATCTGTCAGATTTTTGAGAGCATCAGACAAATATATATTTACAGAAAAACGGAATCCTCAATTATTTATTTTTAATCATAATCTAATCAAGGAGTGATGAACT ]
[+] EMBL CD125999             [                     ATGGTGTCTGGGTTGCATAGCTACGATATCAGTG TCATTTATCTTATCGATATACGTATAGGCTCGTAAG TTTAATTTTTAGC AAACTTTCTTAAATGTTTCTAGTATCATAATCATAATTTCACAGTGTCACATGGTATCGTTTGGTACATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTACTATCAATTTTTATTAGTATCTGTCAGATTCTTGAGAGCATCAGACAAATATATATTTACAGAAAAACGGAATCCTCAATTATTTATTTTTAATCATAATCTAATCAAGGAGTGATGAACT ]
[+] EMBL CD126071             [                      TGGTGTCT GGTTGCATAG TA G TATCAGTGTTCATTTATCTTATCGATATCCGT TAAG TCGTAAGTTTTTATTCTTAGC AAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGATATCGTTTGGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTGCTATCAATTTTTATTAGTATCTGTCAGATTCTTGAGAGCATCAGACAAATATATATTTACAGAAAAACGGAATCCTCAATTATTTATTTTTAATCATAATCTAATCAAGGAGTGATGAACT ]
[-] EMBL CD126123             [                       GGTGTCTGGGTTGCATAG TA G TATCAGTGTTCATTTATCTTATCGATATCCGT TAAG TCGTAAGTTCTTATTTTTAGC AAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGGTATCGTTTTGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTACTATCAATTTTTATTAGTATCTGTCAGATTCTTGAGAGCATCAGACAAATATATATTTACAGAAAAACGGAATCCTCAATTATTTATTCTTAATCATAATCTAATNCAGGAGTGAT  ACTA]
[-] EMBL CD126087             [                       GGTGTCTGGGTTGCATAG TA G TATCAGTGTTCATTTATCTTATCGATATCCGT TAAG TCGTAAGTTTTTATTTTTAGC AAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGATATCGTTTTGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTGCTATCAATTTTTATTAGTATCTGTCAGATTCTTGAGAGCATCAGACAAA ATATATTTACAGAAAAACGGAATCCTCAA TATCTATTTTTAATCATAATCTAATNCAGGA  GATGAACTA]
[-] EMBL CD125892             [                       GGTGTCTGGGTTGCATAG TA G TATCAGTGTTCATTTATCTTATCGATATCCGT TAAG TCGTAAGTTTTTATTTTTAGC AAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGGTATCGTTTTGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTA                                                                                                                                               ]




>consensus_9528#1
TGGAGAGCGAGCATTTATCGAATGGTGTCTGGGTTGCATAGTAGTATCAGTGTTCATTTA
TCTTATCGATATCCGTTAAGTCGTAAGTTTTTATTTTTAGCAAACTTTCTTAAATGTTTC
TAGTATCATAAACATAATTTCACAGTGTCAAATGGTATCGTTTTGTTCATCTCATAGAAT
TATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTGCTATCAATTTTT
ATTAGTATCTGTCAGATTCTTGAGAGCATCAGACAAATATATATTTACAGAAAAACGGAA
TCCTCAATTATTTATTTTTAATCATAATCTAATCAAGGAGTGATGAACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9528#0      AATATTGCGAAAATGTTCACGAAATTGTTTTTTTAACACATTAGCTTCATTAATATCTCC 60
consensus_9528#1      --TGGAGAGCGAGCATTTATCGAATGGTGTCTGGGTTGCAT-AGTAGTATCAGTGT-TCA 56
                        *   * *  *   ** *   *** ** * *      *** **    ** * * * ** 

consensus_9528#0      AGTGAACAAAAGATGTTCATTAAAAATACTGCCTTCGTTTTGAATTATTTGTAAAAAATC 120
consensus_9528#1      TTTATCTTATCGATATCCGTTAA-------GTCGTAAGTTT---TTATTTTTAGCAAACT 106
                        *     *  *** * * ****       * * *   ***   ****** **  ***  

consensus_9528#0      TGTAACAACAGATCTAGTTTCCTTATCCATTTTCTCATCTCCTGTGAAATAAGTTTGTTT 180
consensus_9528#1      TTCTTAAATGTTTCTAGTATCATAAAC-ATAATTTCACAG--TGTCAAATGGTATCGTTT 163
                      *     **    ****** ** * * * **  * ***     *** ****    * ****

consensus_9528#0      CATCAAATAAGGTGCAGCTTTAGCTAAAGCACGTAATTCCACCAAATAAGTGAAATAAAG 240
consensus_9528#1      TGTTCA-TCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTT 222
                        *  * *    *  *  * *    **      * *        ** ** *   * *   

consensus_9528#0      ATTACGCAATCGAGTTAAACCATCTGGTACAATGGATGGATCAAAACGAC-GACGAA-AT 298
consensus_9528#1      ACTGTGCTATCAATTTTTATTAGT--ATCTGTCAGATTCTTGAGAGCATCAGACAAATAT 280
                      * *  ** *** * **  *  *     *      ***   * * * *  * *** ** **

consensus_9528#0      TCCTCTAAATTTGGACCCCAACCTGGATTGTTACTATCATAATCACGAGATATTGGTTGA 358
consensus_9528#1      ATATTTACAGAAAAACGGAATCCTCAATTATTTAT-TTTTAATCATAATCTAATCAAGGA 339
                         * ** *     **   * ***  *** **  * *  ******  *  ** *    **

consensus_9528#0      TGTCGTGAAAAAAGACTTAACGGATATCGATAAGATAAATGAACACTGATACTACTATGC 418
consensus_9528#1      -GTGATGAACTA------------------------------------------------ 350
                       **  ****  *                                                

consensus_9528#0      AACCCAGACACCATTCGATAAAATGCGCGCTTTTCAAGACATGAAGATTGACTTGGACCA 478
consensus_9528#1      ------------------------------------------------------------
                                                                                  

consensus_9528#0      AGGTAACTTGTCCCGTAAGTTATTGAATCTTCATTGAAACAGTTTTCATTGTATACCATA 538
consensus_9528#1      ------------------------------------------------------------
                                                                                  

consensus_9528#0      TACCATATTCTATTTGAAGCAGGTCCTTTGTAACCAGTATAACGTTCAGGATTCTTCAGT 598
consensus_9528#1      ------------------------------------------------------------
                                                                                  

consensus_9528#0      AAGTCCACATAAATCATTNTACCAGAGCTATCGTCATCAGGTTCACAGAATGTCAACTCA 658
consensus_9528#1      ------------------------------------------------------------
                                                                                  

consensus_9528#0      TCTTCA 664
consensus_9528#1      ------