These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 664 fasta sequence [AATATTGCGAAAATGTTCACGAAATTGTTTTTTTAACACATTAGCTTCATTAATATCTCCAGTGAACAAAAGATGTTCATTAAAAATACTGCCTTCGTTTTGAATTATTTGTAAAAAATCTGTAACAACAGATCTAGTTTCCTTATCCATTTTCTCATCTCCTGTGAAATAAGTTTGTTTCATCAAATAAGGTGCAGCTTTAGCTAAAGCACGTAATTCCACCAAATAAGTGAAATAAAGATTACGCAATCGAGTTAAACCATCTGGTACAATGGATGGATCAAAACGACGACGAAATTCCTCTAAATTTGGACCCCAACCTGGATTGTTACTATCATAATCACGAGATATTGGTTGATGTCGTGAAAAAAGACTTAACGGATATCGATAAGATAAATGAACACTGATACTACTATGCAACCCAGACACCATTCGATAAAATGCGCGCTTTTCAAGACATGAAGATTGACTTGGACCAAGGTAACTTGTCCCGTAAGTTATTGAATCTTCATTGAAACAGTTTTCATTGTATACCATATACCATATTCTATTTGAAGCAGGTCCTTTGTAACCAGTATAACGTTCAGGATTCTTCAGTAAGTCCACATAAATCATTNTACCAGAGCTATCGTCATCAGGTTCACAGAATGTCAACTCATCTTCA] [-] EMBL CD183873 [AATATTGCGAAAATGTTCACGAAATTGTTTTTTTAACACATTAGCTTCATTAATATCTCCAGTGAACAAAAGATGTTCATTAAAAATACTGCCTTCGTTTTGAATTATTTGTAAAAAATCTGTAACAACAGATCTAGTTTCCTTATCCATTTTCTCATCTCCTGTGAAATAAGTTTGTTTCATCAAATAAGGTGCAGCTTTAGCTAAAGCACGTAATTCCACCAAATAAGTGAAATAAAGATTACGCAATCGAGTTAAACCATCTGGTACAATGGATGGATCAAAACGACGACGAAATTCCTCTAAATTTGG ] [+] EMBL CD168460 [ AAGTTTGTTTCATCAAATAAGGTGCAGCTTTAGCTAAAGCACGTAATTCCACCAAATAAGTGAAATAAAGATTACGCAATCGAGTTAAACCATCTGGTACAATGGATGGATCAAAACGACGACGAAATTCCTCTAAATTTGGACCCCAACCTGGATTGTTACTATCATAATCACGAGATATTGGTTGATGTCGTGAAAAAAGACTTAACGGATATCGATAAGATAAATGAACACTGATACTACTATGCAACCCAGACACCATTCGATAAAATGCGCGCTTTTCAAGACATGAAGATTGACTTGGACCAAGGTAACTTGTCCCGTAAGTTATTGAATCTTCATTGAAACAGTTTTCATTGTATACCATATACCATATTCTATTTGAAGCAGGTCCTTTGTAACCAGTATAACGTTCAGGATTCTTCAGTAAGTCCACATAAATCATTNTACCAGAGCTATCGTCATCAGGTTCACAGAATGTCAACTCATCTTCA] [+] EMBL CD168457 [ AAGTTCGTTTCATCAAATAAGGTGCAGCTTTAGCTAAAGCACGTAATTCCACCAAATAAGTGAAATAAAGATTACGCAATCGAGTTAAACCATCTGGTACAATGGATGGATCAAAACGACGACGAAATTCCTCTAAATTTGGACCCCAACCTGGATTGTTACTATCATAATCACGAGATATTGG ] consensusID : consensus_9528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 350 fasta sequence [TGGAGAGCGAGCATTTATCGAATGGTGTCTGGGTTGCATAG-TA-G-TATCAGTGTTCATTTATCTTATCGATATCCGT-TAAG-TCGTAAGTTTTTATTTTTAGC-AAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGGTATCGTTTTGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTGCTATCAATTTTTATTAGTATCTGTCAGATTCTTGAGAGCATCAGACAAATATATATTTACAGAAAAACGGAATCCTCAATTATTTATTTTTAATCATAATCTAATCAAGGAGTGATGAACTA] [+] EMBL CD126134 [TGGAGAGCGAGCATTTATCGAATGG G TGGGTTGCATAG TA G TATCAGTG ACATTTATCTTATCGATATCCGT TAAG TCGTAAGTTTTTATTTTTAGCGAAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGATATCGTTTAGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTGCTATCAATTTTTATTAGTATCTGTCAGATTCTTGAGAGCATCAGACAAATATATATTTACAGAAAAACGGAATCCTCAATTATTTATTTTTAATCATAATCTAATCAAGGAGTGATGAACT ] [+] EMBL CD125899 [ ATTTATCGAATGGTGTCTGG TGCATAG TA G TATCAGTGTTCATTTATCTTATCGATATCCGT TAAG TCGTAAGTTTTTATTTTTAGC AAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGGTATCGTTTTGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTACTATCAATTTTTATTAGTATCTGTCAGATTTTTGAGAGCATCAGACAAATATATATTTACAGAAAAACGGAATCCTCAATTATTTATTTTTAATCATAATCTAATCAAGGAGTGATGAACT ] [+] EMBL CD125999 [ ATGGTGTCTGGGTTGCATAGCTACGATATCAGTG TCATTTATCTTATCGATATACGTATAGGCTCGTAAG TTTAATTTTTAGC AAACTTTCTTAAATGTTTCTAGTATCATAATCATAATTTCACAGTGTCACATGGTATCGTTTGGTACATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTACTATCAATTTTTATTAGTATCTGTCAGATTCTTGAGAGCATCAGACAAATATATATTTACAGAAAAACGGAATCCTCAATTATTTATTTTTAATCATAATCTAATCAAGGAGTGATGAACT ] [+] EMBL CD126071 [ TGGTGTCT GGTTGCATAG TA G TATCAGTGTTCATTTATCTTATCGATATCCGT TAAG TCGTAAGTTTTTATTCTTAGC AAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGATATCGTTTGGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTGCTATCAATTTTTATTAGTATCTGTCAGATTCTTGAGAGCATCAGACAAATATATATTTACAGAAAAACGGAATCCTCAATTATTTATTTTTAATCATAATCTAATCAAGGAGTGATGAACT ] [-] EMBL CD126123 [ GGTGTCTGGGTTGCATAG TA G TATCAGTGTTCATTTATCTTATCGATATCCGT TAAG TCGTAAGTTCTTATTTTTAGC AAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGGTATCGTTTTGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTACTATCAATTTTTATTAGTATCTGTCAGATTCTTGAGAGCATCAGACAAATATATATTTACAGAAAAACGGAATCCTCAATTATTTATTCTTAATCATAATCTAATNCAGGAGTGAT ACTA] [-] EMBL CD126087 [ GGTGTCTGGGTTGCATAG TA G TATCAGTGTTCATTTATCTTATCGATATCCGT TAAG TCGTAAGTTTTTATTTTTAGC AAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGATATCGTTTTGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTTACTGTGCTATCAATTTTTATTAGTATCTGTCAGATTCTTGAGAGCATCAGACAAA ATATATTTACAGAAAAACGGAATCCTCAA TATCTATTTTTAATCATAATCTAATNCAGGA GATGAACTA] [-] EMBL CD125892 [ GGTGTCTGGGTTGCATAG TA G TATCAGTGTTCATTTATCTTATCGATATCCGT TAAG TCGTAAGTTTTTATTTTTAGC AAACTTTCTTAAATGTTTCTAGTATCATAAACATAATTTCACAGTGTCAAATGGTATCGTTTTGTTCATCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9528#0 AATATTGCGAAAATGTTCACGAAATTGTTTTTTTAACACATTAGCTTCATTAATATCTCC 60 consensus_9528#1 --TGGAGAGCGAGCATTTATCGAATGGTGTCTGGGTTGCAT-AGTAGTATCAGTGT-TCA 56 * * * * ** * *** ** * * *** ** ** * * * ** consensus_9528#0 AGTGAACAAAAGATGTTCATTAAAAATACTGCCTTCGTTTTGAATTATTTGTAAAAAATC 120 consensus_9528#1 TTTATCTTATCGATATCCGTTAA-------GTCGTAAGTTT---TTATTTTTAGCAAACT 106 * * *** * * **** * * * *** ****** ** *** consensus_9528#0 TGTAACAACAGATCTAGTTTCCTTATCCATTTTCTCATCTCCTGTGAAATAAGTTTGTTT 180 consensus_9528#1 TTCTTAAATGTTTCTAGTATCATAAAC-ATAATTTCACAG--TGTCAAATGGTATCGTTT 163 * ** ****** ** * * * ** * *** *** **** * **** consensus_9528#0 CATCAAATAAGGTGCAGCTTTAGCTAAAGCACGTAATTCCACCAAATAAGTGAAATAAAG 240 consensus_9528#1 TGTTCA-TCTCATAGAATTATGATAAATTTTTCTCAAATTGTTTAAAAACTATTACAGTT 222 * * * * * * * ** * * ** ** * * * consensus_9528#0 ATTACGCAATCGAGTTAAACCATCTGGTACAATGGATGGATCAAAACGAC-GACGAA-AT 298 consensus_9528#1 ACTGTGCTATCAATTTTTATTAGT--ATCTGTCAGATTCTTGAGAGCATCAGACAAATAT 280 * * ** *** * ** * * * *** * * * * * *** ** ** consensus_9528#0 TCCTCTAAATTTGGACCCCAACCTGGATTGTTACTATCATAATCACGAGATATTGGTTGA 358 consensus_9528#1 ATATTTACAGAAAAACGGAATCCTCAATTATTTAT-TTTTAATCATAATCTAATCAAGGA 339 * ** * ** * *** *** ** * * ****** * ** * ** consensus_9528#0 TGTCGTGAAAAAAGACTTAACGGATATCGATAAGATAAATGAACACTGATACTACTATGC 418 consensus_9528#1 -GTGATGAACTA------------------------------------------------ 350 ** **** * consensus_9528#0 AACCCAGACACCATTCGATAAAATGCGCGCTTTTCAAGACATGAAGATTGACTTGGACCA 478 consensus_9528#1 ------------------------------------------------------------ consensus_9528#0 AGGTAACTTGTCCCGTAAGTTATTGAATCTTCATTGAAACAGTTTTCATTGTATACCATA 538 consensus_9528#1 ------------------------------------------------------------ consensus_9528#0 TACCATATTCTATTTGAAGCAGGTCCTTTGTAACCAGTATAACGTTCAGGATTCTTCAGT 598 consensus_9528#1 ------------------------------------------------------------ consensus_9528#0 AAGTCCACATAAATCATTNTACCAGAGCTATCGTCATCAGGTTCACAGAATGTCAACTCA 658 consensus_9528#1 ------------------------------------------------------------ consensus_9528#0 TCTTCA 664 consensus_9528#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||