cluster # 9534

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Schistosoma mansoni
cluster # 9534 cluster # 9534 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9534#0 length = 1010 sequences # 8

consensus_9534#1 length = 379 sequences # 2

consensusID : consensus_9534#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1010
fasta sequence

                              [TGGTACGAGGACTTTGGTTAGTCGGCATGAGTGTTTTCCTGTTGATACAGTATTTGAATGCAGTGAATGTGGATCCAATGAAAAAATATACTTGAGTCGTGATAACAGTGATTCTGATGCTAATCTAATTCCATATTGTTCATATGAACAATCTAATTTTCAATTGTATAAAATATTAGGTGGAATTATTGGAGCCATTGGAATTATATGCTTATTAGTATGTATAATACGTTTCTTAGTGAAACAAATCTGTGGCAATCAACGGATACATAATCGAACTCCTTGTGGTGGTGGATCTGGGGCCAGTACAAATACTAATAGTAATAATGCATCAAATCGACCTGGTCGAAGAAGAAATCGTTCACCTCAATTGCAAAATAATCATAGAGATGATGCTACAGAATATTTACATAATGATTATAGTACAAGTGTATATCCTGTTGGTATTGGAAACTTAGATTTACCCCCTGCATATACAGATGTTGTCAAATTATCTGCCATTGAAACTGAGTCTAACAACAACAACAACAACAATACAAATAACGCAATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACAAATTATAAATCCTTC-TTTTTTATCTAAATCATCATCAAATCATACTCATCAATTTAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTT-AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCCTAATGTTGAAAATGTTTTTTTAATTTAATTTCTTTTGCCT]

[+] EMBL CD082127             [TGGTACGAGGACTTTGGTTAGTCGGCATGAGTGTTTTCCTGTTGATACAGTATTTGAATGCAGTGAATGTGGATCCAATGAAAAAATATACTTGAGTCGTGATAACAGTGATTCTGATGCTAATCTAATTCCATATTGTTCATATGAACAATCTAATTTTCAATTGTATAAAATATTAGGTGGAATTATTGGAGCCATTGGAATTATATGCTTATTAGTATGTATAATACGTTTCTTAGTGAAACAAATCTGTGGCAATCAACGGATACATAATCGAACTCCTTGTGGTGGTGGATCTGGGGCCAGTACAAATACTAATAGTAATAATGCATCAAATCGACCTGGTCGAAGAAGAAATCGTTCACCTCAATTGCAAAATAATCATAGAGATGATGCTACAGAATATTTACATAATGATTATAGTACAAGTGTATATCCTGTTGGTATTGGAAACTTAGATTTACCCCCTGCATATACAGATGTTGTCAAATTATCTGCCATTGAAACTGAGTCTAACAACAACAACAACAACAATACAAATAACGCAATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACAAATTATAAATCCTTC TTTTTTATCTAAATCATCATCAAATCATACTCATCAATTTAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTTAAAATAT ACATCAc                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD196931             [                                                                                                                                                                                                                                                                                                                                                                                                              CAGAATATTTACATAATGATTATAGTACAAGTGTATATCCTGTTGGTATTGGAAACTTAGATTTACCCCCTGCATATACAGATGTTGTCAAATTATCTGCCATTGAAACTGAGTCTAACAACAACAACAACAACAATACAAATAACGCAATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACAAATTATAAATCCTTC TTTTTTATCTAAATCATCATCAAATCATACTCACCAATTTAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAA                                                                                                                                                    ]
[+] EMBL CD185268             [                                                                                                                                                                                                                                                                                                                                                                                                                                             TGTATATCCTGTTGGTATTGGAAACTTAGATTTACCCCCTGCATATACAGATGTTGTCAAATTATCTGCCATTGAAACTGAGTCTAACAACAACAACAACAACAATACAAATAACGCAATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACAAATTATAAATCCTCC TTTTTTATCTAAATCATCATCAAATCATACTCATCAATTTAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCANAACTCCTAATGTTGAAAATGTNTTTT                    ]
[-] EMBL CD188076             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACAAATTATAAATCCTTC TTTTTTATCTAAATCATCATCAAATCATACTCATCAATTTAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCAC                                                                                                                                                                                                                                                                              ]
[-] EMBL CD140414             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACAAATTATAAATCCTTCTTTTTTTATCTAAATCATCATCAAATCATACTCATCAATTTAATTGTGCATTATATGATAACGAACAGAATGCTACATCAAGTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCCTAATGTTGAAAATGTTTTTTTAATTTAAT           ]
[-] EMBL CD196450             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACAACAACAAATTATAAATCCTTC TTTTTTATCTAAATCATCATCAAATCATACTCATCAATTTAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCGTAATGTTGAAAATGTTTTTTTAATTTAAT           ]
[-] EMBL CD140627             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCTGAATCATCATCAAATCATACTCATCAATTTAATTGTGCATGATATGATAACGAACAGAATGCTACATCAAGTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCCTAATGTTGAAAATGTTTTTTTAATTTAAT           ]
[+] EMBL CD088327             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGGACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCCTAATGTTGAAAATGTTTTTTTAATTTAATTTCTTTTGCCT]




>consensus_9534#0
TGGTACGAGGACTTTGGTTAGTCGGCATGAGTGTTTTCCTGTTGATACAGTATTTGAATG
CAGTGAATGTGGATCCAATGAAAAAATATACTTGAGTCGTGATAACAGTGATTCTGATGC
TAATCTAATTCCATATTGTTCATATGAACAATCTAATTTTCAATTGTATAAAATATTAGG
TGGAATTATTGGAGCCATTGGAATTATATGCTTATTAGTATGTATAATACGTTTCTTAGT
GAAACAAATCTGTGGCAATCAACGGATACATAATCGAACTCCTTGTGGTGGTGGATCTGG
GGCCAGTACAAATACTAATAGTAATAATGCATCAAATCGACCTGGTCGAAGAAGAAATCG
TTCACCTCAATTGCAAAATAATCATAGAGATGATGCTACAGAATATTTACATAATGATTA
TAGTACAAGTGTATATCCTGTTGGTATTGGAAACTTAGATTTACCCCCTGCATATACAGA
TGTTGTCAAATTATCTGCCATTGAAACTGAGTCTAACAACAACAACAACAACAATACAAA
TAACGCAATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACA
AATTATAAATCCTTCTTTTTTATCTAAATCATCATCAAATCATACTCATCAATTTAATTG
TGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTTAAATATAACATCAAC
GGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGC
AATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGC
TCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATAC
AACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCT
GCAAAACTCCTAATGTTGAAAATGTTTTTTTAATTTAATTTCTTTTGCCT

consensusID : consensus_9534#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 379
fasta sequence

                              [TAAATCATCATCAAATCATACTCATCAATTTCAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTTAAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCCTAATGTTGAAAATGTTTTCTGATCAAGTAAAT]

[-] EMBL CD196674             [TAAATCATCATCAAATCATACTCATCAATTTCAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTTAAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCCTAATGTTGAAAATGTTTTCTGATCAAGTAAAT]
[-] EMBL CD096923             [                                                                                                                                             TCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGAT                                                                                                                                         ]




>consensus_9534#1
TAAATCATCATCAAATCATACTCATCAATTTCAATTGTGCATTATATGATAATGAACAGA
ATGCTACATCAAGTCAAATTTTAAATATAACATCAACGGATATAGCACCACCGCCACCGC
CGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATG
ATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAG
ATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGA
ATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCCTAATGTTGAAAAT
GTTTTCTGATCAAGTAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9534#0      TGGTACGAGGACTTTGGTTAGTCGGCATGAGTGTTTTCCTGTTGATACAGTATTTGAATG 60
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      CAGTGAATGTGGATCCAATGAAAAAATATACTTGAGTCGTGATAACAGTGATTCTGATGC 120
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      TAATCTAATTCCATATTGTTCATATGAACAATCTAATTTTCAATTGTATAAAATATTAGG 180
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      TGGAATTATTGGAGCCATTGGAATTATATGCTTATTAGTATGTATAATACGTTTCTTAGT 240
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      GAAACAAATCTGTGGCAATCAACGGATACATAATCGAACTCCTTGTGGTGGTGGATCTGG 300
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      GGCCAGTACAAATACTAATAGTAATAATGCATCAAATCGACCTGGTCGAAGAAGAAATCG 360
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      TTCACCTCAATTGCAAAATAATCATAGAGATGATGCTACAGAATATTTACATAATGATTA 420
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      TAGTACAAGTGTATATCCTGTTGGTATTGGAAACTTAGATTTACCCCCTGCATATACAGA 480
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      TGTTGTCAAATTATCTGCCATTGAAACTGAGTCTAACAACAACAACAACAACAATACAAA 540
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      TAACGCAATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACA 600
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      AATTATAAATCCTTCTTTTTTATCTAAATCATCATCAAATCATACTCATCAATTT-AATT 659
consensus_9534#1      ------------------------TAAATCATCATCAAATCATACTCATCAATTTCAATT 36
                                              ******************************* ****

consensus_9534#0      GTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTTAAATATAACATCAA 719
consensus_9534#1      GTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTTAAATATAACATCAA 96
                      ************************************************************

consensus_9534#0      CGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATG 779
consensus_9534#1      CGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATG 156
                      ************************************************************

consensus_9534#0      CAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTG 839
consensus_9534#1      CAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTG 216
                      ************************************************************

consensus_9534#0      CTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATA 899
consensus_9534#1      CTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATA 276
                      ************************************************************

consensus_9534#0      CAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTC 959
consensus_9534#1      CAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTC 336
                      ************************************************************

consensus_9534#0      TGCAAAACTCCTAATGTTGAAAATGTTTTTTTAATTTAATTTCTTTTGCCT 1010
consensus_9534#1      TGCAAAACTCCTAATGTTGAAAATGTTTTCT-GATCAAGTAAAT------- 379
                      ***************************** *  **  * *   *