These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1010 fasta sequence [TGGTACGAGGACTTTGGTTAGTCGGCATGAGTGTTTTCCTGTTGATACAGTATTTGAATGCAGTGAATGTGGATCCAATGAAAAAATATACTTGAGTCGTGATAACAGTGATTCTGATGCTAATCTAATTCCATATTGTTCATATGAACAATCTAATTTTCAATTGTATAAAATATTAGGTGGAATTATTGGAGCCATTGGAATTATATGCTTATTAGTATGTATAATACGTTTCTTAGTGAAACAAATCTGTGGCAATCAACGGATACATAATCGAACTCCTTGTGGTGGTGGATCTGGGGCCAGTACAAATACTAATAGTAATAATGCATCAAATCGACCTGGTCGAAGAAGAAATCGTTCACCTCAATTGCAAAATAATCATAGAGATGATGCTACAGAATATTTACATAATGATTATAGTACAAGTGTATATCCTGTTGGTATTGGAAACTTAGATTTACCCCCTGCATATACAGATGTTGTCAAATTATCTGCCATTGAAACTGAGTCTAACAACAACAACAACAACAATACAAATAACGCAATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACAAATTATAAATCCTTC-TTTTTTATCTAAATCATCATCAAATCATACTCATCAATTTAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTT-AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCCTAATGTTGAAAATGTTTTTTTAATTTAATTTCTTTTGCCT] [+] EMBL CD082127 [TGGTACGAGGACTTTGGTTAGTCGGCATGAGTGTTTTCCTGTTGATACAGTATTTGAATGCAGTGAATGTGGATCCAATGAAAAAATATACTTGAGTCGTGATAACAGTGATTCTGATGCTAATCTAATTCCATATTGTTCATATGAACAATCTAATTTTCAATTGTATAAAATATTAGGTGGAATTATTGGAGCCATTGGAATTATATGCTTATTAGTATGTATAATACGTTTCTTAGTGAAACAAATCTGTGGCAATCAACGGATACATAATCGAACTCCTTGTGGTGGTGGATCTGGGGCCAGTACAAATACTAATAGTAATAATGCATCAAATCGACCTGGTCGAAGAAGAAATCGTTCACCTCAATTGCAAAATAATCATAGAGATGATGCTACAGAATATTTACATAATGATTATAGTACAAGTGTATATCCTGTTGGTATTGGAAACTTAGATTTACCCCCTGCATATACAGATGTTGTCAAATTATCTGCCATTGAAACTGAGTCTAACAACAACAACAACAACAATACAAATAACGCAATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACAAATTATAAATCCTTC TTTTTTATCTAAATCATCATCAAATCATACTCATCAATTTAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTTAAAATAT ACATCAc ] [+] EMBL CD196931 [ CAGAATATTTACATAATGATTATAGTACAAGTGTATATCCTGTTGGTATTGGAAACTTAGATTTACCCCCTGCATATACAGATGTTGTCAAATTATCTGCCATTGAAACTGAGTCTAACAACAACAACAACAACAATACAAATAACGCAATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACAAATTATAAATCCTTC TTTTTTATCTAAATCATCATCAAATCATACTCACCAATTTAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAA ] [+] EMBL CD185268 [ TGTATATCCTGTTGGTATTGGAAACTTAGATTTACCCCCTGCATATACAGATGTTGTCAAATTATCTGCCATTGAAACTGAGTCTAACAACAACAACAACAACAATACAAATAACGCAATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACAAATTATAAATCCTCC TTTTTTATCTAAATCATCATCAAATCATACTCATCAATTTAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCANAACTCCTAATGTTGAAAATGTNTTTT ] [-] EMBL CD188076 [ AATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACAAATTATAAATCCTTC TTTTTTATCTAAATCATCATCAAATCATACTCATCAATTTAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCAC ] [-] EMBL CD140414 [ ATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACAAATTATAAATCCTTCTTTTTTTATCTAAATCATCATCAAATCATACTCATCAATTTAATTGTGCATTATATGATAACGAACAGAATGCTACATCAAGTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCCTAATGTTGAAAATGTTTTTTTAATTTAAT ] [-] EMBL CD196450 [ ACAACAACAAATTATAAATCCTTC TTTTTTATCTAAATCATCATCAAATCATACTCATCAATTTAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCGTAATGTTGAAAATGTTTTTTTAATTTAAT ] [-] EMBL CD140627 [ TCTGAATCATCATCAAATCATACTCATCAATTTAATTGTGCATGATATGATAACGAACAGAATGCTACATCAAGTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCCTAATGTTGAAAATGTTTTTTTAATTTAAT ] [+] EMBL CD088327 [ GTCAAATTTT AAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGGACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCCTAATGTTGAAAATGTTTTTTTAATTTAATTTCTTTTGCCT] consensusID : consensus_9534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 379 fasta sequence [TAAATCATCATCAAATCATACTCATCAATTTCAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTTAAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCCTAATGTTGAAAATGTTTTCTGATCAAGTAAAT] [-] EMBL CD196674 [TAAATCATCATCAAATCATACTCATCAATTTCAATTGTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTTAAATATAACATCAACGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATACAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTCTGCAAAACTCCTAATGTTGAAAATGTTTTCTGATCAAGTAAAT] [-] EMBL CD096923 [ TCGCAGCAACAAATGCAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTGCTCAAGTTACTCATCAAACAGAAGAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9534#0 TGGTACGAGGACTTTGGTTAGTCGGCATGAGTGTTTTCCTGTTGATACAGTATTTGAATG 60 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 CAGTGAATGTGGATCCAATGAAAAAATATACTTGAGTCGTGATAACAGTGATTCTGATGC 120 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 TAATCTAATTCCATATTGTTCATATGAACAATCTAATTTTCAATTGTATAAAATATTAGG 180 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 TGGAATTATTGGAGCCATTGGAATTATATGCTTATTAGTATGTATAATACGTTTCTTAGT 240 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 GAAACAAATCTGTGGCAATCAACGGATACATAATCGAACTCCTTGTGGTGGTGGATCTGG 300 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 GGCCAGTACAAATACTAATAGTAATAATGCATCAAATCGACCTGGTCGAAGAAGAAATCG 360 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 TTCACCTCAATTGCAAAATAATCATAGAGATGATGCTACAGAATATTTACATAATGATTA 420 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 TAGTACAAGTGTATATCCTGTTGGTATTGGAAACTTAGATTTACCCCCTGCATATACAGA 480 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 TGTTGTCAAATTATCTGCCATTGAAACTGAGTCTAACAACAACAACAACAACAATACAAA 540 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 TAACGCAATAATAATACCGGATGCATTTTCTTTTAATTTATTACCAAATGAACAACAACA 600 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 AATTATAAATCCTTCTTTTTTATCTAAATCATCATCAAATCATACTCATCAATTT-AATT 659 consensus_9534#1 ------------------------TAAATCATCATCAAATCATACTCATCAATTTCAATT 36 ******************************* **** consensus_9534#0 GTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTTAAATATAACATCAA 719 consensus_9534#1 GTGCATTATATGATAATGAACAGAATGCTACATCAAGTCAAATTTTAAATATAACATCAA 96 ************************************************************ consensus_9534#0 CGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATG 779 consensus_9534#1 CGGATATAGCACCACCGCCACCGCCGCCTAGTTATGAAGAGATTGTCGCAGCAACAAATG 156 ************************************************************ consensus_9534#0 CAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTG 839 consensus_9534#1 CAATGAAGATAAATCGTGAAAATGATAATTCATTTATATCAGGGAATAAAATGAATATTG 216 ************************************************************ consensus_9534#0 CTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATA 899 consensus_9534#1 CTCAAGTTACTCATCAAACAGAAGATACCGTCACTACTACTACTGCTAATAATAGTAATA 276 ************************************************************ consensus_9534#0 CAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTC 959 consensus_9534#1 CAACATATAGTGGCAGTAATTTGAATACTGGACGAACTGAGACTAGTTCCTCGTAGTTTC 336 ************************************************************ consensus_9534#0 TGCAAAACTCCTAATGTTGAAAATGTTTTTTTAATTTAATTTCTTTTGCCT 1010 consensus_9534#1 TGCAAAACTCCTAATGTTGAAAATGTTTTCT-GATCAAGTAAAT------- 379 ***************************** * ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||