These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9535#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 971 fasta sequence [GAGCCTTATTCGGCCGAGGTNACTTGGTCAGACAGCTAATCGCACTTCTAACAGTATTATCAAATCGCATGTTGGCAGTAGTGATGATGATGAAGCCTTTGAAAACTTTTTAAAATTTCAACAAACCGAGATAAACAAACTTGCGGTTAATCAAGACAGTGAATGGTCATCTTGGGACTCGGATAATGATGATAGGTCGAGTTGTGATTCCCCATATCAGACGTTTTACTACAGAGTCAACAACAAGTTGCACTTGTCTGGTATCACAGAGTTACCATCAAGGTCATCAGAATCAAAATTCTCTCATTCAGGGAAAAAATATATTGCTCCGAATAAGAAAACTCAGTCATGTACTGTACAAGTTTCAAAGTATCCGAAGATTTCCAAATATCAGAAAATTTCACATAAGATGGAAAAGTGTAATTCGCAATATTTATCTACGGAGGAATTCGTTTATTCTCTTTATCCAGTTAATAATAATGATGACAGTAAGCGTATGTCACACGAGAAACTTCGTCATCCTGATGCGTTAAAATTTGTCCAAAAGTTTAAGCCAAACAGATCTGAATTAGCTGAAAAATTGTACCAACTTTACAATGAAAAGATATTTTCTAACCAATTACCACCAAAGTTAGAGATTATATGGAGTCGGCGATTATTGAAAACTGCTGGTCTTTGCAAGTACATGATGCGTACAATCACTCATTCGGACGGAACATCTAATCAGGTCCGTATAGCTCAGATTTTGTTGTCGGAAAAAGTATGCACTACAGCTGAGCGTGTTCGCGACACCCTGCTGCATGAAATTTGTCACGCTGCTGTCTGGTTGATTAATGGTTTAAATGATGGTCATGGACGACATTGGAAATCTTGGGCTAACCATGTTCATCGAGTTTGGCCGAAACTGCCTGTGGTTTCTGTTTGTCACGCATATATAATCGCCGTCACGAGATAAGGGCGAATTCCGCGCT] [+] EMBL CD081494 [GAGCCTTATTCGGCCGAGGTNACTTGGTCAGACAGCTAATCGCACTTCTAACAGTATTATCAAATCGCATGTTGGCAGTAGTGATGATGATGAAGCCTTTGAAAACTTTTTAAAATTTCAACAAACCGAGATAAACAAACTTGCGGTTAATCAAGACAGTGAATGGTCATCTTGGGACTCGGATAATGATGATAGGTCGAGTTGTGATTCCCCATATCAGACGTTTTACTACAGAGTCAACAACAAGTTGCACTTGTCTGGTATCACAGAGTTACCATCAAGGTCATCAGAATCAAAATTCTCTCATTCAGGGAAAAAATATATTGCTCCGAATAAGAAAACTCAGTCATGTACTGTACAAGTTTCAAAGTATCCGAAGATTTCCAAATATCAGAAAATTTCACATAAGATGGAAAAGTGTAATTCGCAATATTTATCTACGGAGGAATTCGTTTATTCTCTTTATCCAGTTAATAATAATGATGACAGTAAGCGTATGTCACACGAGAAACTTCGTCATCCTGATGCGTTAAAATTTGTCCAAAAGTTTAAGCCAAACAGATCTGAATTAGCTGAAAAATTGTACCAACTTTACAATGAAAAGATATTTTCTAACCAATTACCACCAAAGTTAGAGATTATATGGAGTCGTCGACTATTGAAAACTGCTGGTCTTTGCAAGTACATGATGCGTACAATCACTCATTCGGACGGAACATCTAATCAGGTCCGTATAGCTCAGATTTTGTTGTCGGAAAAAGTATGCACTACAGCTGAGCGTGTTCGCGACACCCTGCTGCATGAAATTTGTCACGCTGCTGTCTGGTTGATTAATGGTTTAAATGATGGTCATGGACGACATTGGAAATCTTGNGCTAACCATGTc ] [-] EMBL CD060847 [ GGCGATTATTGAAAACTGCTGGTCTTTGCAAGTACATGATGCGTACAATCACTCATTCGGACGGAACATCTAATCAGGTCCGTATAGCTCAGATTTTGTTGTCGGAAAAAGTATGCACTACAGCTGAGCGTGTTCGCGACACCCTGCTGCATGAAATTTGTCACGCTGCTGTCTGGTTGATTAATGGTTTAAATGATGGTCATGGACGACATTGGAAATCTTGGGCTAACCATGTTCATCGAGTTTGGCCGAAACTGCCTGTGGTTTCTGTTTGTCACGCATATATAATCGCCGTCACGAGATAAGGGCGAATTCCGCGCT] [-] EMBL CD060829 [ GGCGATTATTGAAAACTGCTGGTCTTTGCAAGTACATGATGCGTACAATCACTCATTCGGACGGAACATCTAATCAGGTCCGTATAGCTCAGATTTTGTTGTCGGAAAAAGTATGCACTACAGCTGAGCGTGTTCGCGACACCCTGCTGCATGAAATTTGTCACGCTGCTGTCTGGTTGATTAATGGTTTAAATGATGGTCATGGACGACATTGGAAATCTTGGGCTAACCATGTTCATCGAGTTTGGCCGACACTGCCTGTGGTTTCTGTTTGTCACGCATATATAATCGCCG ] consensusID : consensus_9535#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 943 fasta sequence [CATTTTTCGGCACGACGATTACCACCAAAGTTAGAGATATATGGAGTCGTCGACTATTGAAAACTGCTGGTCTTTGCAAGTACATGATGCGTACAATCACTCATTCGGACGGAACATCTAATCAGGTCCGTATAGCTCAGATTTTGTTGTCGGAAAAAGTATGCACTACAGCTGAGCGTGTTCGCGACACCCTGCTGCATGAAATTTGTCACGCTGCTGTCTGGTTGATTAATGGTTTAAATGATGGTCATGGACGACATTGGAAATCTTGGGCTAACCATGTTCATCGAGTTTGGCCGAAACTGCCTGTGGTTTCTGTTTGTCACGCATATACAATCGATACACGATTCACATATCGGTGCACAGGGTGTGGTGTATGTATCAATCGACATAGCAAATC-TTTGGATATTACTA-GAAAGATTTGTGGTCATTGTCGTTCGAAGTTTGAATTAC-TTATTAATACACCCAAAGGTCGTATGCTTCGACCCAGCTTAGCTGCACAATATGATAAACGTCTCCTGCCACATTGTTCTTCCAATAAAGTAACTAAAATGCATTCTGAACCGGAAAAATATCGGTTGTCTAGAACTCCAGATGAAAATTATAATGTTGAAAATGGACTGTCAAATATTTTCGGCGACTTACGTCTTGAATGAGATTTTTCCCCAATATATTTACTTTTACTGCGTTTTATTTCTGTTCATAAGATTATATTTTTAATGAAATTATTTTTCTACCCTGTGTAGGTGTCTGCATTTCTACATACCCTGTAATTCAATATTTCTCACTTATTTATTTTTTACACGTTTTCTGATTTCCACCTGTTAAGTTTTATCCTAAAACATATT-CTCAGG-TTGCATTTTCCACTTCTTTGTCTAATTTTTACTC-GTGTAATTAATGCATTTAAAAATAAAAAAGATTCTTTCCAAANNAAAAAAAAAAA] [+] EMBL CD081787 [CATTTTTCGGCACGACGATTACCACCAAAGTTAGAGATATATGGAGTCGTCGACTATTGAAAACTGCTGGTCTTTGCAAGTACATGATGCGTACAATCACTCATTCGGACGGAACATCTAATCAGGTCCGTATAGCTCAGATTTTGTTGTCGGAAAAAGTATGCACTACAGCTGAGCGTGTTCGCGACACCCTGCTGCATGAAATTTGTCACGCTGCTGTCTGGTTGATTAATGGTTTAAATGATGGTCATGGACGACATTGGAAATCTTGGGCTAACCATGTTCATCGAGTTTGGCCGAAACTGCCTGTGGTTTCTGTTTGTCACGCATATACAATCGATACACGATTCACATATCGGTGCACAGGGTGTGGTGTATGTATCAATCGACATAGCAAATC TTTGGATATTACTA GAAAGATTTGTGGTCATTGTCGTTCGAAGTTTGAATTAC TTATTAATACACCCAAAGGTCGTATGCTTCGACCCAGCTTAGCTGCACAATATGATAAACGTCTCCTGCCACATTGTTCTTCCAATAAAGTAACTAAAATGCATTCTGAACCGGAAAAATATCGGTTGTCTAGAACTCCAGATGAAAATTATAATGTTGAAAATGGACTGTCAAATATTTTCGGCGACTTACGTCTTGAATGAGATTTTTCCCCAATATATTTAATTTTACTGCGTTTTATTTCTGTTCATAAGATTATATTTTTAATGAAATTATTTTTCTACCCTGTGTAGGTGTCTGCATTTCTACATACCCTGNTATTCAATATTTCTCACTTATTTATTTTTTACACGTTTTCTGATTTCCACCTGTTAAGTTTTATCCT AAACATATT CTCAGGNNTGCA TTTCCACTTTCTTGTCTAA TTTTACTCNGTGT ATTAATGCATTTAAAAATAAAta ] [-] EMBL CD075518 [ TATGCACTACAGCTGAGCGTGTTCGCGACACCCTGCTGCATGAAATTTGTCACGCTGCTGTCTGGTTGATTAATGGTTTAAATGATGGTCATGGACGACATTGGAAATCTTGGGCTAACCATGTTCATCGAGTTTGGCCGAAACTGCCTGTGGTTTCTGTTTGTCACGCATATACAATCGATACACGATTCACATATCGGTGCACAGGGTGTGGTGTATGTATCAATCGACATAGCAAATC TTTGGATATTACTA GAAAGATTTGTGGTCATTGTCGTTCGAAGTTTGAATTAC TTATTAATACACCCAAAGGTCGTATGCTTCGACCCAGCTTAGCTGCACAATATGATAAACGTCTCCTGCCACATTGTTCTTCCAATAAAGTAACTAAAATGCATTCTGAACCGGAAAAATATCGGTTGTCTAGAACTCCAGATGAAAATTATAATGTTGAAAATGGACTGTCAAATATTTTCGGCGACTTACGTCTTGAATGAGATTTTTCCCCAATATATTTAATTTTACTGCGTTTTATTTCTGTTCATAAGATTATATTTTTAATGAAATTATTTTTCTACCCTGTGTAGGTGTCTGCATTTCTACATACCCTGTAATTCAATATTTCTCACTTATTTATTTTTTACACGTTTTCTGATTTCCACCTGTTAAGTTTTATCCTAAAACATATTAATCAGG TTGCATTTTCCACTTCTTTGTCTAATTTTTACTC GTGTAATTAATGGATTTAAAAATAAAAAAAATTCTTTCCAAANN ] [+] EMBL CD135684 [ TATGTATCAATCGACATAGCAAATC TTTGGATATTACTA GAAAGATTTGTGGTCATTGTCGTTCGAAGTTTGAATTAC TTATTAATACACCCAAAGGTCGTACGCTTCGACCCAGCTTAGCTGCACAATATGATAAACGTCTCCTGCCACATTGTTCTTCCAATAAAGTAACTAAAATGCATTCTGAACCGGAAAAATATCGGTTGTCTAGAACTCCAGATGAAAATTATAATGTTGAAAATGGACTGTCAAATATTTTCGGCGACTTACGTCTTGAATGAGATTTTTCCCCAATATATTTACTTTTACTG ] [-] EMBL CD135698 [ ATGTATCAATCGACATAGCAAATC TTTGGATATTACTA GAAAGATTTGTGGTCATTGTCGTTCGAAGTTTGAATTAC TTATTAATACACCCAAAGGTCGTATGCTTCGACCCAGCTTAGCTGCACAATATGATAAACGTCTCCTGCCACATTG TCTTCCAATAAAGTAACTAAAATGCATTCTGAACCGGAAAAATATCGGTTGTCTAGAACTCCAGATGAAAATTATAATGTTGAAAATGGACTGTCAAATATTTTCGGCGACTTACGTCTTGAATGAGATTTTTCCCCAATATATTTACTTTCACTGC ] [-] EMBL CD075318 [ CATAGCAAATC TTTGGATATTACTA GAAAGATTTGTGGTCATTGTCGTTCGAAGTTTGAATTAC TTATTAATACACCCAAAGGTCGTATGCTTCGACCCAGCTTAGCTGCACAATATGATAAACGTCTCCTGCCACATTGTTCTTCCAATAAAGTAACTAAAATGCATTCTGAACCGGAAAAATATCGGTTGTCTAGAACTCCAGATGAAAATTATAATGTTGAAAATGGACTGTCAAATATTTTCGGCGACTTACGTCTTGAATGAGATTTTTCCCCAATATATTTACTTTTACTGCGTTTTATTTCTGTTCATAAGATTATATTTTTAATGAAATTATTTTTCTACCCTGTGTAGGTGTTTGCATTTCTACATACCCTGTAATTCAATATTTCTCACTTATTTATTTTTTACACGTTTTCTGATTTCCACCTGTTAAGTTTTATCCTAAAACATATT CTCAGG TTGCATTTTCCACTTCTTTGTCTAATTTTTACTC GTGTAATTAATGCATTTAAAAATAAAATAG ] [-] EMBL AI394851 [ caAAATCTTTTGGATATTACTAGGAACGATTTGTGGTCATTGTCGTTCGAAGTTTG ATTACGTTATTAATACACCCAAAGGTCGTATGCTTCGACCCAGCTTAGCTGCACATTATGATAAACGTCTCTTGCCACATTGTTCTTCCAATAAAGTAACTAAAATGCATTCTGAACCGGAAAAATATCGGTTGTCTAGAACTCCAGATGAAAATTATAATGTTGAAAATGGACTGTCAAATATTTTCGGCGACTTACGTCTTGAATGAGATTTTTCCCCAATATATTTACTTTTACTGCGTTTTATTTCTGTTCATAAGATTATATTTTTAATGAAATTATTTTTCTACCCTGTGTAGGTGTTTGCATTTCTACATACCCTGTAATTCAATATTTCTCACTTATTTATTTTTTACACGTTTTCTGATTTCCACCTGTTAAGTTTTATCCTAAAACATATT CTCAGG TTGCATTTTCCACTTCTTTGTCTAATTTTTACTC GTGTAATTAATGCATTTAAAAATAAAATAGATTCTTTCCAAAAAAAAAAAAAAAA] consensusID : consensus_9535#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [TGTGATTCCCCATATCAGACGTTTTACTACAGAGTCAACAACAAGTTGCACTTGTCTGGTATCACAGAGTTACCATCAAGGTCATCAGAATCAAAATTCTCTCATTCAGGGAAAAAATATATTGCTCCGAATAAGAAAACTCAGTCATGTACTGTACAAGTTTCAAAGTATCCGAAGATTTCCAAATATCAGAAAATTTCACATAAGATGGAAAAGTGTAATTCGCAATATTTATCTACGGAGGAATTCGTTTATTCTCTTTATCCAGTTAATAATAATGATGACAGTAAGCGTATGTCACACGAGAAACTTCGTCATCCTGATTTCCCACCTGGGTACCG] [-] EMBL CD129415 [TGTGATTCCCCATATCAGACGTTTTACTACAGAGTCAACAACAAGTTGCACTTGTCTGGTATCACAGAGTTACCATCAAGGTCATCAGAATCAAAATTCTCTCATTCAGGGAAAAAATATATTGCTCCGAATAAGAAAACTCAGTCATGTACTGTACAAGTTTCAAAGTATCCGAAGATTTCCAAATATCAGAAAATTTCACATAAGATGGAAAAGTGTAATTCGCAATATTTATCTACGGAGGAATTCGTTTATTCTCTTTATCCAGTTAATAATAATGATGACAGTAAGCGTATGTCACACGAGAAACTTCGTCATCCTGATTTCCCACCTGGGTACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9535#0 GAGCCTTATTCGGCCGAGGTNACTTGGTCAGACAGCTAATCGCACTTCTAACAGTATTAT 60 consensus_9535#2 ------------------------------------------------------------ consensus_9535#1 ------------------------------------------------------------ consensus_9535#0 CAAATCGCATGTTGGCAGTAGTGATGATGATGAAGCCTTTGAAAACTTTTTAAAATTTCA 120 consensus_9535#2 ------------------------------------------------------------ consensus_9535#1 CATTTTTCGGCACGACGATTACCACCAAAGTTAGAGATATATGGAGTCGTCGACTATTGA 60 consensus_9535#0 ACAAACCGAGATAAACAAACTTGCGGTTAATCAAGACAGTGAATGGTCATCTTGGGACTC 180 consensus_9535#2 ------------------------------------------------------------ consensus_9535#1 AAACTGCTGGTCTTTGCAAGTACATGATGCGTACAATCACTCATTCGGACGGAACATCTA 120 consensus_9535#0 GGATAATGATGATAGGTCGAGTTGTGATTCCCCATATCAGACGTTTTACTACAGAGT-CA 239 consensus_9535#2 ----------------------TGTGATTCCCCATATCAGACGTTTTACTACAGAGT-CA 37 consensus_9535#1 ATCAGGTCCGTATAGCTCAGATTTTGTTGTCGGAAAAAGTATGCACTACAGCTGAGCGTG 180 * ** * * * * * * *** * *** consensus_9535#0 ACAACAAGTTGCACTTGTCTGGTATC-ACAGAGTTACCATCAAGGTCATCA--GAATCAA 296 consensus_9535#2 ACAACAAGTTGCACTTGTCTGGTATC-ACAGAGTTACCATCAAGGTCATCA--GAATCAA 94 consensus_9535#1 TTCGCGACACCCTGCTGCATGAAATTTGTCACGCTGCTGTCTGGTTGATTAATGGTTTAA 240 * * * ** ** ** * * * ** * * ** * * * ** consensus_9535#0 AATTCTCTCATTCAGGGAAA-AAATATATTGCTCCGAATAAGAAAACTCAGTCATGT--- 352 consensus_9535#2 AATTCTCTCATTCAGGGAAA-AAATATATTGCTCCGAATAAGAAAACTCAGTCATGT--- 150 consensus_9535#1 ATGATGGTCATGGACGACATTGGAAATCTTGGGCTAACCATGTTCATCGAGTTTGGCCGA 300 * **** * * * * ** *** * * * * * *** * consensus_9535#0 -ACTGTACAAGTTTCAAAGTATCCGAAGATTTCCAAATATCAGAAAATTT-CACATAAGA 410 consensus_9535#2 -ACTGTACAAGTTTCAAAGTATCCGAAGATTTCCAAATATCAGAAAATTT-CACATAAGA 208 consensus_9535#1 AACTGCCTGTGGTTTCTGTTTGTCACGCATATACAATCGATACACGATTCACATATCGGT 360 **** * ** * * ** * *** * * *** ** ** * consensus_9535#0 TGGAAAAGTGTAATTCGCAATATTTATCTACGGAGGAATTCGTTTATTCTCTTTATCCAG 470 consensus_9535#2 TGGAAAAGTGTAATTCGCAATATTTATCTACGGAGGAATTCGTTTATTCTCTTTATCCAG 268 consensus_9535#1 GCACAGGGTGTGGTGTATG-TATCAATCGACATAGCAAATCTTTGGATATTACTAGAAAG 419 * **** * *** *** ** ** ** ** ** * * ** ** consensus_9535#0 -TTAATAATAATGATGACAGTAAGCGTATGTCACACGAGAAACTTCGTCATCCTGATGCG 529 consensus_9535#2 -TTAATAATAATGATGACAGTAAGCGTATGTCACACGAGAAACTTCGTCATCCTGAT--- 324 consensus_9535#1 ATTTGTGGTCATTGTCGTTCGAAGTTTGAATTACTTATTAATACACCCAAAGGTCGTATG 479 ** * * ** * *** * * ** ** * * * * consensus_9535#0 TTAAAATTTGTCC--AAAAGTTTAAGCCAAACAGATCTGAATTAGCTGAAAAATTGTACC 587 consensus_9535#2 TTCCCACCTGGGT--ACCG----------------------------------------- 341 consensus_9535#1 CTTCGACCCAGCTTAGCTGCACAATATGATAAACGTCTCCTGCCACATTGTTCTTCCAAT 539 * * consensus_9535#0 AACTTTACAATGAAAAGATATTTTCTAACCAATTACCACCAAAGTTAGAGATTATATGGA 647 consensus_9535#2 ------------------------------------------------------------ consensus_9535#1 AAAGTAACTAAAATGCATTCTGAACCGGAAAAATATCGGTTGTCTAGAACTCCAGATGAA 599 consensus_9535#0 GTCGGCGATTATTGAAAACTGCTGGTCTTTGCAAGTACATGATGCGTACAATCACTCATT 707 consensus_9535#2 ------------------------------------------------------------ consensus_9535#1 AATTATAATGTTGAAAATGGACTGTCAAATATTTTCGGCGACTTACGTCTTGAATGAGAT 659 consensus_9535#0 CGGACGGAACATCTAATCAGGTCCGTATAGCTCAGATTTTGTTGTCGGAAAAAGTATGCA 767 consensus_9535#2 ------------------------------------------------------------ consensus_9535#1 TTTTCCCCAATATATTTACTTTTACTGCGTTTTATTTCTGTTCATAAGATTATATTTTTA 719 consensus_9535#0 CTACAGCTGAGCGTGTTCGCGACACCCTGCTGCATGAAATTTGTCACGCTGCTGTCTGGT 827 consensus_9535#2 ------------------------------------------------------------ consensus_9535#1 ATGAAATTATTTTTCTACCCTGTGTAGGTGTCTGCATTTCTACATACCCTGTAATTCAAT 779 consensus_9535#0 TGATTAATGGTTTAAATGATGGTCATGGACGACATTGGAAATCTTGGGCTAACCATGTTC 887 consensus_9535#2 ------------------------------------------------------------ consensus_9535#1 ATTTCTCACTTATTTATTTTTTACACGTTTTCTGATTTCCACCTGTTAAGTTTTATCCTA 839 consensus_9535#0 ATCGAGTTTGGCCGAAACTGCCTGTGGTTTCTGTTTGTCACGCATATATAATCGCCGTCA 947 consensus_9535#2 ------------------------------------------------------------ consensus_9535#1 AAACATATTCTCAGGTTGCATTTTCCACTTCTTTGTCTAATTTTTACTCGTGTAATTAAT 899 consensus_9535#0 CGAGATAAGGGCGAATTCCGCGCT-------------------- 971 consensus_9535#2 -------------------------------------------- consensus_9535#1 GCATTTAAAAATAAAAAAGATTCTTTCCAAANNAAAAAAAAAAA 943 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||