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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1174 fasta sequence
[GACGTACCCGGCAATTTCAACAGGAACGCATAATTTGAAGAATGAAAGATATAACTGGTTGTGTTTGTCTTGTTACGGGAGCTACTCGTGGTATTGGTAAAGGCATAGCAGTATCATTAGGAAAGTCTGGAGCTACAGTGTATTTAACTGGACGAACATCAGTGCCGCTTAGTGGCGGGGTTGGCGGTAGTCTCCAGGAAACATCAGATATCATCAACAACTTTGGTGGTAAAGCTATTCCTGTTGCGGTTGATCATTCTAATGAAGATGAAATAAAAAATCTATTTCATCAGATTGATCGGGAACAAAAAGGTCGCTTAGATATCGTGGTCAACAACGCATATAGTGCTGTAACATTTATACAAAAAAATATGGCGAAACCTTATTATGACATTACAGACAGATCTCCAGGTGAAGCTTGGGATGTCGTTAATAATACTGGTCTAAAGAATCACTATATTTGTTCTGTTTTGGCTACGCGAATGATGATTGAATACCA-GAAAAAGTTAAATTCAAGTTCAGCTCAACCTGGCTTGATTGTAAATATCACTTCTATCGGTGGAAAAATCTATCTTTTTAACGTGGCTTATGGAAGTGGTAAAGCAGCACTAGATCGTCTAACTCATGATATGGCGTTCGAATTAAAAAAGGAAAATGTTAATATTTCTGTTGTCGGAGTTTCTCCTGGATTGGTTCGTACAGAGCATATTCTTGACGCTGCTTCT-AAGGTTCTCTCACAGTGAATATAGAAAACAGTGAATCTCCTGAACTAGTTGGTCGCGTAATAGTAGGTATGGCTGCTGAATCGCCTAAGAAACTACTTTCTCGGTCAGGTCATATATTCTTTGTCAGTGATTTAGCTGAGGAATACGGTATACATGAAGATTGTGGTCGAGAAGTCATGAACATAAGGTCTTTGAAATACCTTCTTTCATATAGAGGCTACTATATTGCTAAATTTATACCCAGTTTTATTCGAATACCAGAATGGTTATTCTATATAATATTAAAATATAGATGAGAAATTTTTTATACAGATTTCCAGCTTTCTTTTAGACAATCTGATAATAAAACATCCATTGATACGTACTTTTTTTCAATAAGTTACTTTTCAGAATAATCCTTGATAATATTCAGGATGCTTTGTACCTGATTCTTCAAAAATAATGATTTT]
[+] EMBL CD162514 [GACGTACCCGGCAATTTCAACAGGAACGCATAATTTGAAGAATGAAAGATATAACTGGTTGTGTTTGTCTTGTTACGGGAGCTACTCGTGGTATTGGTAAAGGCATAGCAGTATCATTAGGAAAGTCTGGAGCTACAGTGTATTTAACTGGACGAACATCAGTGCCGCTTAGTGGCGGGGTTGGCGGTAGTCTCCAGGAAACATCAGATATCATCAACAACTTTGGTGGTAAAGCTATTCCTGTTGCGGTTGATCATTCTAATGAAGATGAAATAAAAAATCTATTTCATCAGATTGATCGGGAACAAAAAGGTCGCTTAGATATCGTGGTCAACAACGCATATAGTGCTGTAACATTTATACAAAAAAATATGGCGAAACCTTATTATGACATTACAGACAGATCTCCAGGTGAAGCTTGGGATGTCGTTAATAATACTGGTCTAAAGAATCACTATATTTGTTCTGTTTTGGCTACGCGAATGATGATTGAATACCA GAAAAAGTTAAATTCAAGTTCAGCTCAACCTGGCTTGATTGTAAATATCACTTCTATCGGTGGAAAAATCTATCTTTTTAACGTGGCTTATGGAAGTGGTAA ]
[-] EMBL CD189152 [ CAATTTCAACAGGAACGCATAATNTGAAGAATGAAAGATATAACTGATTGTGTTTGTCTTGTTACGGGAGCTACTCGTGGTATTGGTAAAGGCATAGCAGTATCATTGGGAAAGTCTGGAGCTACAGTGTATTTAACTGGACGAACATCAGTGCCGCTTAGTGGCGGGGTTGGCGGTAGTCTCCAGGAAACATCAGATATCATCAACAACTTTGGTGGTAAAGCTATTCCTGTTGCGGTTGATCATTCTAATGAAGATGAAATAAAAAATCTATTTCATCAGATTGATCGGGAACAAAAAGGTCGCTTAGATATCGTGGTCAACAACGCATATAGTGCTGTAACATTTATACAAAAAAATATGGCGAAACCTTATTATGACATTACA ]
[+] EMBL CD079100 [ TGAAGAATGAAAGATATAACTGGTTGTGTTTGTCTTGTTACGGGAGCTACTCGTGGTATTGGTAAAGGCATAGCAGTATCATTAGGAAAGTCTGGAGCTACAGTGTATTTAACTGGACGAACATCAGTGCCGCTTAGTGGCGGGGTTGGCGGTAGTCTCCAGGAAACATCAGATATCATCAACAACTTTGGTGGTAAAGCTATTCCTGTTGCGGTTGATCATTCTAATGAAGATGAAATAAAAAATCTATTTCATCAGATTGATCGGGAACAAAAAGGTCGCTTAGATATCGTGGTCAACAACGCATATAGTGCTGTAACATTTATACAAAAAAATATGGCGAAACCTTATTATGACATTACAGACAGATCTCCAGGTGAAGCTTGGGATGTTGTTAATAATACTGGTCTAAAGAATCACTATATTTGTTCTGTTTTGGCTACGCGAATGATGATTGAATACCA GAAAAAGTTAAATTCAAGTTCAGCTCAACCTGGCTTGATTGTAAATATCACTTCTATCGGTGGAAAAATCTATCTTTTTAACGTGGCTTATGGAAGTGGTAAAGCAGCACTAGATCGTCTAACTCATGATATGGCGTTCGA ]
[+] EMBL CD096956 [ CATAGCAGTATCATTAGGAAAGTCTGGAGCTACAGTGTATTTAACTGGACGAACATCAGTGCCGCTTAGTGGCGGGGTTGGCGGTAGTCTCCAGGAAACATCAGATATCATCAACAACTTTGGTGGTAAAGCTATTCCTGTTGCGGTTGATCATTCTAATGAAGATGAAATAAAAAATCTATTTCATCAGATTGATCGGGAACAAAAA ]
[+] EMBL CD136881 [ TATTTGTTCTGTTTTGGCTACGCGAATGATGATTGAATACCANGAAAAAGTTAAATTCAAGTTCAGCTCAACCTGGCTTGATTGTAAATATCACTTCTATCGGTGGAAAAATCTATCTTTTTAACGTGGCTTATGGAAGTGGTAAAGCAGCACTAGATCGTCTAACTCATGATATGGCGTTCGAATTAAAAAAGGAAAATGTTAATATTTCTGTTGTCGGAGTTTCTCCTGGATTGGTTCGTACAGAGCATATTCTTGACGCTGCTTCT AAGGTTCTCTCACAGTGAATATAGAAAACAGTGAATCTCCTGAACTAGTTGGTCGCGTAATAGTAGGTATGGCTGCTGAATCGCCTAAGAAACTACTTTCTCGGTCAGGTCATATATTCTTTGTCAGTGATTTAGCTGAGGAATACGGTATACATGAAGATTGTGGTCGAGAAGTCATGAACATAAGGTCTTTGAAATA ]
[-] EMBL CD137312 [ CAGCTCAACCTGGCTTGATTGTAAATATCACTTCTATCGGTGGAAAAATCTATCTTTTTAACGTGGCTTATGGAAGTGGTAAAGCAGCACTAGATCGTCTAACTCATGATATGGCGTTCGAATTAAAAAAGGAAAATGTTAATATTTCTGTTGTCGGAGTTTCTCCTGGATTGGTTCGTACAGAGCATATTCTTGACGCTGCTTCTAAAGGTTCTCTCACAGTGAATATAGAAAACAGTGAATCTCCTGAACTAGTTGGTCGCGTAATAGTAGGTATGGCTGCTGAATCGCCTAAGAAACTACTTTCTCGGTCAGGTCATATATTCTTTGTCAGTGATTTAGCTGAGGAATACGGTATACATGAAGATTGTGGTCGAGAAGTCATGAACATAAGGTCTTTGAAATAC ]
[-] EMBL CD073554 [ CTAACTCATGATATGGCGTTCGAATTAAAAAAGGAAAATGTTAATATTTCTGTTGTCGGAGTTTCTCCTGGATTGGTTCGTACAGAGCATATTCTTGACGCTGCTTCTAAAGGTTCTCTCACAGTGAATATAGAAAACAGTGAATCTCCTGAACTAGTTGGTCGCGTAATAGTAGGTATGGCTGCTGAATCGCCTAAGAAACTACTTTCTCGGTCAGGTCATATATTCCTTGTCAGTGATTTAGCTGAGGAATACGGTATACATGAAGATTGTGGTCGAGAAGTCATGAACATAAGGTCTTTGAAATACCTTCTTTCATATAGAGGCTACTATATTGCTAAATTTATACCCAGTTTTATTCGAATACCAGAATGGTTATTCTATATAATATTAAAATATAGATGAGAAATTTTTTATACAGATTTCCAGCTTTCTTTTAGACAATCTGATAATAAAACATCCATTGATACGTACTTTTTTTCAATAAGTTACTTTTCAGAATAATCCTTGATAATATTCAGGATGCTTTGTACCTGATTCTTCAAAAATAATGATTTT]
[+] EMBL CD185734 [ CATGATATGGCGTTCGAATTAAAAAAGGAAAATGTTAATATTTCTGTTGTCGGAGTTTCTCCTGGATTGGTTCGTACAGAGCATATTCTTGACGCTGCTTCTAAAGGTTCTCTCACAGTGAATATAGAAAACAGTGAATCTCCTGAACTAGTTGGTCGCGTAATAGTATGTATGGCTGCTGAATCGCCTAAGAAACTACTTTCTCGGTCAGGTCATATATTCCTTGTCAGTGATTTATCTGAGGAATACGGTATACATGAAGATTGTGGTCGAGAAGTCATGAACATAAGGTCTTTGAAATACCTTCTTTCATATAGAGGCTACTATATTGC ]
consensusID : consensus_9536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence
[CACTGATGTTCGTCCAGTTAAATACACTGCAGCTCCAGACTTTCCTAATGATACTGCTATGCCTTTACCAATACCACGAGTAGCTCCCGTAACAAGACAAACACAACCAGTTATATCTTTCATTCTTCAAATTATGCGTTCCTGTTGAAATTGCGCGGTAGTCTCCAGGAAACATCAGATATCATCAACAACTTTGGTGGTAAAGCTATTCCTGTTGCGGTTGATCATTCTAATGAAGATGAAATAAAAAATCTATTTCATCAGATTGATCGGGAAACAAAAGGTCGCTTAGATATCGTGGTCAACAACGCATATAGTGCTGTAACATTTATACAAAAANATATGGGGAAACCTTATTATGACATTACAGACAGATCTCCAGAATCACTATATTTGTTCTGTTTTGGCTACGCGAATGATGATTGAATACCAGAAAAAGTTAAATTCAAGTTCAGCTCAACCTGGCTTGATTGTAAATATCACTTCTATCGGTGGAAAAATCTATCTTTTTAACGTGGCTTATGGAAGTGGTAAAGCAGCACTAGATCGTCTAACTCATGATATGGCGTTCGAATTAAAAAAGGAAAATGTTAAT]
[+] EMBL CD165986 [CACTGATGTTCGTCCAGTTAAATACACTGCAGCTCCAGACTTTCCTAATGATACTGCTATGCCTTTACCAATACCACGAGTAGCTCCCGTAACAAGACAAACACAACCAGTTATATCTTTCATTCTTCAAATTATGCGTTCCTGTTGAAATTGCGCGGTAGTCTCCAGGAAACATCAGATATCATCAACAACTTTGGTGGTAAAGCTATTCCTGTTGCGGTTGATCATTCTAATGAAGATGAAATAAAAAATCTATTTCATCAGATTGATCGGGAAACAAAAGGTCGCTTAGATATCGTGGTCAACAACGCATATAGTGCTGTAACATTTATACAA ]
[-] EMBL CD165988 [ AGATTGATC GGACAAAAAAGGTCGCTTAGATATCGTGGTCAACAACGCATATAGTGCTGT ACATTTATACAAAAANATATGGGGAAACCTTATTATGACATTACAGACAGATCTCCAGAATCACTATATTTGTTCTGTTTTGGCTACGCGAATGATGATTGAATACCAGAAAAAGTTAAATTCAAGTTCAGCTCAACCTGGCTTGATTGTAAATATCACTTCTATCGGTGGAAAAATCTATCTTTTTAACGTGGCTTATGGAAGTGGTAAAGCAGCACTAGATCGTCTAACTCATGATATGGCGTTCGAATTAAAAAAGGAAAATGTTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9536#0 GACGTACCCGGCAATTTCAACAGGAACGCATAATTTGAAGAATGAAAGATATAACTGGTT 60
consensus_9536#1 ------------------------CACTGATG-TTCGTCCAGTTAAATACACTGCAGCTC 35
** ** ** * * * *** * * * * *
consensus_9536#0 GTGTTTGTCTTGTTACGGGAGCTACTCGTGGTATTGGTAA-AGGCATAGCAGTATCATTA 119
consensus_9536#1 CAGACTTTCCTAATGATACTGCTATGCCTT-TACCAATACCACGAGTAGCTCCCGTAACA 94
* * ** * * **** * * ** ** * * **** * *
consensus_9536#0 GGAAAGTCTGGAGCTACAGTGTATTTAACTGGACGAACATCAGTGCCGCTTAGTGGCGGG 179
consensus_9536#1 AGACAAACACAACCAGTTATATCTTTCATTCTTCAAAT-----TATGCGTTCCTGTTGAA 149
** * * * * * * *** * * * ** * ** ** *
consensus_9536#0 GTTG-GCGGTAGTCTCCAGGAAACATCAGATATCATCAACAACTTTGGTGGTAAAGCTAT 238
consensus_9536#1 ATTGCGCGGTAGTCTCCAGGAAACATCAGATATCATCAACAACTTTGGTGGTAAAGCTAT 209
*** *******************************************************
consensus_9536#0 TCCTGTTGCGGTTGATCATTCTAATGAAGATGAAATAAAAAATCTATTTCATCAGATTGA 298
consensus_9536#1 TCCTGTTGCGGTTGATCATTCTAATGAAGATGAAATAAAAAATCTATTTCATCAGATTGA 269
************************************************************
consensus_9536#0 TCGGGAACAAAAAGGTCGCTTAGATATCGTGGTCAACAACGCATATAGTGCTGTAACATT 358
consensus_9536#1 TCGGGAAACAAAAGGTCGCTTAGATATCGTGGTCAACAACGCATATAGTGCTGTAACATT 329
******* ***************************************************
consensus_9536#0 TATACAAAAAAATATGGCGAAACCTTATTATGACATTACAGACAGATCTCCAGGTGAAGC 418
consensus_9536#1 TATACAAAAANATATGGGGAAACCTTATTATGACATTACAGACAGATCTCCAG------- 382
********** ****** ***********************************
consensus_9536#0 TTGGGATGTCGTTAATAATACTGGTCTAAAGAATCACTATATTTGTTCTGTTTTGGCTAC 478
consensus_9536#1 -------------------------------AATCACTATATTTGTTCTGTTTTGGCTAC 411
*****************************
consensus_9536#0 GCGAATGATGATTGAATACCAGAAAAAGTTAAATTCAAGTTCAGCTCAACCTGGCTTGAT 538
consensus_9536#1 GCGAATGATGATTGAATACCAGAAAAAGTTAAATTCAAGTTCAGCTCAACCTGGCTTGAT 471
************************************************************
consensus_9536#0 TGTAAATATCACTTCTATCGGTGGAAAAATCTATCTTTTTAACGTGGCTTATGGAAGTGG 598
consensus_9536#1 TGTAAATATCACTTCTATCGGTGGAAAAATCTATCTTTTTAACGTGGCTTATGGAAGTGG 531
************************************************************
consensus_9536#0 TAAAGCAGCACTAGATCGTCTAACTCATGATATGGCGTTCGAATTAAAAAAGGAAAATGT 658
consensus_9536#1 TAAAGCAGCACTAGATCGTCTAACTCATGATATGGCGTTCGAATTAAAAAAGGAAAATGT 591
************************************************************
consensus_9536#0 TAATATTTCTGTTGTCGGAGTTTCTCCTGGATTGGTTCGTACAGAGCATATTCTTGACGC 718
consensus_9536#1 TAAT-------------------------------------------------------- 595
****
consensus_9536#0 TGCTTCTAAGGTTCTCTCACAGTGAATATAGAAAACAGTGAATCTCCTGAACTAGTTGGT 778
consensus_9536#1 ------------------------------------------------------------
consensus_9536#0 CGCGTAATAGTAGGTATGGCTGCTGAATCGCCTAAGAAACTACTTTCTCGGTCAGGTCAT 838
consensus_9536#1 ------------------------------------------------------------
consensus_9536#0 ATATTCTTTGTCAGTGATTTAGCTGAGGAATACGGTATACATGAAGATTGTGGTCGAGAA 898
consensus_9536#1 ------------------------------------------------------------
consensus_9536#0 GTCATGAACATAAGGTCTTTGAAATACCTTCTTTCATATAGAGGCTACTATATTGCTAAA 958
consensus_9536#1 ------------------------------------------------------------
consensus_9536#0 TTTATACCCAGTTTTATTCGAATACCAGAATGGTTATTCTATATAATATTAAAATATAGA 1018
consensus_9536#1 ------------------------------------------------------------
consensus_9536#0 TGAGAAATTTTTTATACAGATTTCCAGCTTTCTTTTAGACAATCTGATAATAAAACATCC 1078
consensus_9536#1 ------------------------------------------------------------
consensus_9536#0 ATTGATACGTACTTTTTTTCAATAAGTTACTTTTCAGAATAATCCTTGATAATATTCAGG 1138
consensus_9536#1 ------------------------------------------------------------
consensus_9536#0 ATGCTTTGTACCTGATTCTTCAAAAATAATGATTTT 1174
consensus_9536#1 ------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||