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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9538#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 838 fasta sequence
[TCATACTGTTACTTCAGTATGTTGTCCTTGAGTAGCAAAAAAGGGCTACACA-GGCTGATTTATTCATCATACTCGCGACTTTCATCTTCGGAGCCAAGTCAACCTTCGAAAGTTGATAGTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAAACCACAAGGGAAAATAGACTATGTTATCACCCGGCTTGATGATTTAGCAGACTGGGCCAGAAAAAACTCTATATATCCACTTACTTTTGGTCTTGCATGCTGTGCTGTTGAAATGATGCATATCGCTGGGCCTCGTTATGACATGGATCGTTATGGGGTAGTTTTTCGGGCTAGCCCACGTCAAGCTGATCTTTTAATCGTCTCTGGAACTGTTACGAACAAGATGGCTCCGGCTCTTCACAGGATTTACAGCCAAATGACTCAACCGAAGTGGGTTATTTCAATGGGCTCTTGTGCAAATGGTGGTGGTTACTATCATTATTCATATAGTGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGGTTGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAA-GAATTTTCAGAACT-GAGTTGTAACTCACTTTCTAAAATTAATTCACGCATTAGTGTTTACTTGTATT-TATTATAGAAAATAAGACATTTCTAGATACATGTGTTTATCTGCTCGGTTTTACGTACCACTTTTCGAATAAAATATAGGTTTCACAAAAAAAAAAAAAAAA]
[+] EMBL CD144059 [TCATACTGTTACTTCAGTATGTCGTCCTTGAGTAGCAAAAAAGGGCTACACA GGCTGATTTATTCATCATACTCGCGACTTTCATCTTCGGAGCCAAGTCAACCTTCGAAAGTTGATAGTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAAACCACAAGGGAAAATAGACTATGTTATCACCCGGCTTGATGATTTAGCAGACTGGGCCAGAAAAAACTCTATATATCCACTTACTTTTGGTCCTGCATGCTGTGCTGTTGAAATGATGCATATCGCTGGGCCTCGATATGAC ]
[+] EMBL CD178692 [ CATACTGTTACTTCAGTATGTTGTCCTTGAGTAGCAAAAAAGGGCTACACA GGCTGATTTATTCATCATACTCGCGACTTTCATCTTCGGAGCCAAGTCAACCTTCGAAAGTTGATAGTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAAACCACAAGGGAAAATAGACTATGTTATCACCCGGCTTGATGATTTAGCAGACTGGGCCAGAAAAAACTCTATATATCCACTTACTTTTGGTCTTGCATGCTGTGCTGTTGAAATGATGCATATCGCTGGGCCTCGTTATGACATGGATCGTTATGGGGTAGTTTTTCGGGCTAGCCCACGTCAAGCTGATCTTTTAATCGTCTCTGGAACTGTTACGAACAAGATGGCTCCGGCTCTTCACAGGATTTACAGCCAAATGACTCAACCGAAGTGGGTTATTTCAATGGGCTCTTGTGCAAATGGTGGTGGTTACTATCATTATTCATATAGTGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGGTTGTCCT ]
[+] EMBL CD185809 [ TGTTACTTCAGTATGTTGTCCTTGAGTAGCAAAAAAGGGCTACACA GGCTGATTTATTCATCATACTCGCGACTTTCATCTTCGGAGCCAAGTCAACCTTCGAAAGTTGATAGTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAAACCACAAGGGAAAATAGACTATGTTATCACCCGGCTTGATGATTTAGCAGACTGGGCCAGAAAAAACTCTATATATCCACTTACTTTTGGTCTTGCATGCTGTGCTGTTGAAATGATGCATATCGCTGGGCCTCGTTATGACATGGATCGTTATGGGGTAGTTTTTCGGGCTAGCCCACGTCAAGCTGATCTTTTAATCGTCTCTGGAACTGTTACGAACAAGATGGCTCCGGCTCTTCACAGGATTTACAGCCAAATGACTCAACCGAAGTGGGTTATTTCAATGGGCTCTTGTGCAAATGGTGGTGGTTACTATCATTATTCATATAGTGTTGTACGTGGCTGTGATCGCATTATCCCAGTTG ]
[+] EMBL CD083031 [ gAAAAAGGGCTACACAGGGCTGATTTATTCATCATACTCGCGACTTTCATCTTCGGAGCCATGTCAACCTTCGAAAGTTGATAGTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAAACCACAAGGGAAAATAGACTATGTTATCACCCGGCTTGATGATTTAGCAGACTGGGCCAGAAAAAACTCTATATATCCACTTACTTTTGGTCTTGCATGCTGTGCTGTTGAAATGATGCATATCGCTGGGCCTCGTTATGACATGGATCGTTATGGGGTAGTTTTTCGGGCTAGCCCACGTCAAGCTGATCTTTTAATCGTCTCTGGAACTGTTACGAACAAGATGGCTCCGGCTCTTCACAGGATTTACAGCCAAATGACTCAACCGAAGTGGGTTATTTCAATGGGCTCTTGTGCAAATGGTGGTGGTTACTATCATTATTCATATAGTGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGGTTGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAA ]
[+] EMBL AA883020 [ CTGATTTATTCATCATACTCGCGACTTTCATCTTCGGAGCCAAGTCAACCTTCGAAAGTTGATAGTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAAACCACAAGGGAAAATAGACTATG TATCACCCGGCTTGATGATTTAGCAGA ]
[-] EMBL AI394798 [ TGGCCCAGGAAAAACTCTATATATCCACTAACTTTTGGTCTTGCATGCTGTGCTGTTGAATGGATGCATATCGCTGGCCCTCGTTATGACATGGATCGTTATGGGGTAGTTTTTCGGGCTAGCCCACGTCAAGCTGATCTNTTAATCGTCTCTGGAACTGTTACGAACAAGATGGCTCCGGCTCTTCACAGGATTTACAGCCAAATGACTCAACCGAAGTGGGTTATTTCAATGGGCTCTTGTGCAAATGGTGGTGGTTACTATCATTATTCATATAGTGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGGTTGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAA GAATTTTCAGAACT GAGTTGTAACTCACTTTCTAAAATTAATTCACGCATTAGTGTTTACTTGTATT TATTATAGAAAATAAGACATTTCTAGATACATGTGTTTATCTGCTCGGTTTTACGTACCACTTTTCGAATAAAATATAGGTTTCACAAAAAAAAAAAAAAAA]
[-] EMBL AA999583 [ GATATATATGTCCCAGGTTGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAAGGAATTTTCAGAACTGGAGTTGTAACTCACTTTCTAAAATTAATTCACGCATTAGTGTTNACTTGTATTNTATTATAGAAAATAAGACA ]
consensusID : consensus_9538#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 727 fasta sequence
[CCAGGCCAGAATTTGGCACGAGGGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGGTTGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTAAGTGGAAATGTAAGTCGATCAAAACTTATAGAAATGGTTTCGGTGGGACAACAAGTGTCGAGAAAGAATTTAAGATTACAAGTAATAACATTAACAGTGTTTTCCAGTGAGCTATCTGTAGATAATTTCCAGTTGGTCTTACGAAAAATGTTTTTCAGGACAGCAGTATTTTTCTTCTGAGTATATTTTATAATATTAATCGTTTAATTACGCATCACGACTACTGTTATTGCTTTACTTGAATTTATTTCAGTTAAAGTGATCCGTAAGAGTACCGCTTTTCTTCTAGAGAAGTTTATCATCTGTATTTTACGAGTAAAGATACAAAAAAAACTAAGGGCACTGGTATTTATTTTTCATCGTTGAGTATATCTTTGAGTATTTTTTTTGCATCCATAGATGTAAAGGTCCTTTTTGTAACTACCGAAGTCGGATTTTTTTGGGTTNTTTTATTGTTGTTTGGTACAATTCTATGCANACCCCTATTTTTGTTTGTGTGTCTATCACATA]
[+] EMBL CD081140 [CCAGGCCAGAATTTGGCACGAGGGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGGTTGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTAAGTGGAAATGTAAGTCGATCAAAACTTATAGAAATGGTTTCGGTGGGACAACAAGTGTCGAGAAAGAATTTAAGATTACAAGTAATAACATTAACAGTGTTTTCCAGTGAGCTATCTGTAGATAATTTCCAGTTGGTCTTACGAAAAATGTTTTTCAGGACAGCAGTATTTTTCTTCTGAGTATATTTTATAATATTAATCGTTTAATTACGCATCACGACTACTGTTATTGCTTTACTTGAATTTATTTCAGTTAAAGTGATCCGTAAGAGTACCGCTTTTCTTCTAGAGAAGTTTATCATCTGTATTTTACGAGTAAAGATACAAAAAAAACTAAGGGCACTGGTATTTATTTTTCATCGTTGAGTATATCTTTGAGTATTTTTTTTGCATCCATAGATGTAAAGGTCCTTTTTGTAACTACCGAAGTCGGATTTTTTTGGGTTNTTTTATTGTTGTTTGGTACAATTCTATGCANACCCCTATTTTTGTTTGTGTGTCTATCACAT ]
[-] EMBL CD074963 [ AAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTAAGTGGAAATGTAAGTCGATCAAAACTTATAGAAATGGTTTCGGTGGGACAACAAGTGTCGAGAAAGAATTTAAGATTACAAGTAATAACATTAACAGTGTTTTCCAGTGAGCTATCTGTAGATAATTTCCAGTTGGTCTTACGAAAAATGTTTTTCAGGACAGCAGTATTTTTCTTCTGAGTATATTTTATAATATTAATCGTTTAATTACGCATCACGACTACTGTTATTGCTTTACTTGAATTTATTTCAGTTAAAGTGATCCGTAAGAGTACCGCTTTTCTTCTAGAGAAGTTTATCATCTGTATTTTACGAGTAAAGATACAAAAAAAACTAAGGGCACTGGTATTTATTTTTCATCGTTGAGTATATCTTTGAGTATTTTTTTTGCATCCATAGATGTAAAGGTCCTTTTTGTAACTACCGAAGTCGGATTTTTTTGGGTTTTTTTATTGTTGTTTGGTACAATTCTATGCAAACCCCTATTTTTGTTTGTGTGTATATCACATA]
consensusID : consensus_9538#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence
[TGAAACACACCTATCGTCATTTGATAGAGAATGCGAGCGCCATGTTAAAATGCGTTTACAAAATTAGCGTATTTACAAAATTAGCTCAATTCCAGTGCATTCAGTGACTTTTGAGTGCACGTGGGGCCCTGTATTGCAGCTGCGAAGTTGATTGCGCAAGTCGATAAGTTGGTAACGCAGGTTTCCCAGTCACGACGTTTTAAACGACGTCCATGAATTTAATACGACCCACTTAGTCGAATTGTTACGTGCCCCCCTCGTGACAATTCTCTCTCTCGACTCAACCGAAGTGTTGTATTCAATTGCTCTTGTGCAAATTGTTGTTGTTACTATCATTATTCATATAGTGTTGTACGTGGCTTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGTTGTCCTCCATCTGCTGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTGTAACTCACTTTCTAAAATTAATTCACGCATTAGTGTTTACTTGTATTTATTATAGAAAATAAGACATT]
[-] EMBL AI618782 [TGAAACACACCTATCGTCATTTGATAGAGAATGCGAGCGCCATGTTAAAATGCGTTTACAAAATTAGCGTATTTACAAAATTAGCTCAATTCCAGTGCATTCAGTGACTTTTGAGTGCACGTGGGGCCCTGTATTGCAGCTGCGAAGTTGATTGCGCAAGTCGATAAGTTGGTAACGCAGGTTTCCCAGTCACGACGTTTTAAACGACGTCCATGAATTTAATACGACCCACTTAGTCGAATTGTTACGTGCCCCCCTCGTGACAATTCTCTCTCTCGACTCAACCGAAGTGTTGTATTCAATTGCTCTTGTGCAAATTGTTGTTGTTACTATCATTATTCATATAGTGTTGTACGTGGCTTGTGATCGCATTATCCCAGTTGATATATATGTCCCAGTTGTCCTCCATCTGCTGAAGCACTAATGTATTCTATATTACAATTGCAAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAATTATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTGTAACTCACTTTCTAAAATTAATTCACGCATTAGTGTTTACTTGTATTTATTATAGAAAATAAGACATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9538#0 TCATACTGTTACTTCAGTATGTTGTCCTTGAGTAGCAAAAAAGGGCTACACAGGCTGATT 60
consensus_9538#2 ------------------------------------------------------------
consensus_9538#1 CCAGGCCAGAATTTGGCACGAGGGTTGTACGTGGCTGTGATCGCATTATCCCAGTTGATA 60
consensus_9538#0 TATTCATCATACTCGCGACTTTCATCTTCGGAGCCA--AGTCAACCTTCGAAAGTTGATA 118
consensus_9538#2 ------------------------------------------------------------
consensus_9538#1 TATATGTCCCAGGT-TGTCCTCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTG 119
consensus_9538#0 GTTCTGATGAGTCCATCCCATTTAAACCGTACAGTCCTTTTCCAAA-ACCACAAGGGAAA 177
consensus_9538#2 -----------------TGAAACACACC-TATCGTCATTTGATAGAGAATGCGAGCGCCA 42
consensus_9538#1 CAAAAGAAAATTAAATCTGAAAAACACTTTA-AATCATGGTATAGA-------AGATAAA 171
* * ** ** ** * * * ** *
consensus_9538#0 ATAGACTATGTTATCACCCGGCTTGATGATTTAGCAGACTGGGCCAGAAAAAACTCTATA 237
consensus_9538#2 TGTTAAAATGCGTTTACAAAATTAGCGTATTTACAAAATTAGCTCA-----ATTCCAGTG 97
consensus_9538#1 TGGAGAAATTATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTAAGTGGAAATGTAAG 231
** * * **** * * * *
consensus_9538#0 TATCCACTTACTTTTGGTCTTGCATGCTGTGCTGTTGAAATGATGCATATCGCTGGGCCT 297
consensus_9538#2 CATTCAGTGACTTTTGAGTGCACGTGGGGCCCTGTATTGCAGCTGCGAAG---TTGATTG 154
consensus_9538#1 TCGATCAAAACTTATAGAAATGGTTTCGGTG--GGACAACAAGTGTCGAGA--AAGAATT 287
**** * * * * ** * *
consensus_9538#0 CGTTATGACATGGATCGTTATGGGGTAGTTTTTCGGGCTAGCCCACGTCAAGCTGATCTT 357
consensus_9538#2 CGCAAGTCGATAAGTTGGTA--ACGCAGGTTTCCCAGTCACGACGTTTTAAACGACGTCC 212
consensus_9538#1 TAAGATTACAAGTAATAACATTAACAGTGTTTTCCAGTGAGC-TATCTGTAGATAATTTC 346
* * * *** * * * * *
consensus_9538#0 TTAATCGTCTCTGGAACTGTTACGAACAAGATGGCTCCGGCTCTTCACAGGATT-TACAG 416
consensus_9538#2 ATGAATTTAATACGACCCACT-TAGTCGAATTGTTACGTGCCCCCCTCGTGACAATTCTC 271
consensus_9538#1 CAGTTGGTCTTACGAAAAATGTTTTTCAGGACAGCA-GTATTTTTCTTCTGAGTATATTT 405
* ** * * ** *
consensus_9538#0 CCAAATGACTCAACCGAAGTGGGTTATTTCAATGGGCTCTTGTGCAAATGGTGGTGGTTA 476
consensus_9538#2 TCTCTCGACTCAACCGAAGTGTTGTATTCAATT--GCTCTTGTGCAAATTGTTGTTGTTA 329
consensus_9538#1 TATAATA--TTAATCGTTTAATTACGCATCACG--ACTACTGTT---ATTGCTTTACTTG 458
* ** ** * ** *** ** * * **
consensus_9538#0 CTATCATTATTCATATAGTGTTGTACGTGGCT-GTGATCGCATTATCCCAGTTGATATAT 535
consensus_9538#2 CTATCATTATTCATATAGTGTTGTACGTGGCTTGTGATCGCATTATCCCAGTTGATATAT 389
consensus_9538#1 AATTTATTTCAGTTAAAGTGATCCGTAAGAGT----ACCGCTTTTCTTCTAGAGAAGTTT 514
* *** ** **** * * * * *** ** * ** * *
consensus_9538#0 ATGTCCCAGGTTGTCC---TCCATCTGCGGAAGCACTAATGTATTCTATATTACAATTGC 592
consensus_9538#2 ATGTCCCAG-TTGTCC---TCCATCTGCTGAAGCACTAATGTATTCTATATTACAATTGC 445
consensus_9538#1 ATCATCTGTATTTTACGAGTAAAGATACAAAAAAAACTAAGGGCACTGGTATTTATTTTT 574
** * ** * * * * * * ** * * * ** * * **
consensus_9538#0 AAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAAT 652
consensus_9538#2 AAAAGAAAATTAAATCTGAAAAACACTTTAAATCATGGTATAGAAGATAAATGGAGAAAT 505
consensus_9538#1 CATCGTTGAGTATATCTTTGAGTATTTTTTTTGCATC-CATAGATG-TAAAGGTCCTTTT 632
* * * ** **** * *** *** ***** * **** * *
consensus_9538#0 TATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTGTAACTCACTTTCTAAAATTAATT 712
consensus_9538#2 TATCTGAACTGAAGAAAGAATTTTCAGAACTGAGTTGTAACTCACTTTCTAAAATTAATT 565
consensus_9538#1 TGTAACTACCGAAGTCGGATTTTTTTGGGTTNTTTTATTGTTGTTTGGTACAATTCTATG 692
* * ** **** ** **** * * ** * * * ** * **
consensus_9538#0 CACGCATTAGTGTTTACTTGTATTTATTATAGAAAATAAGACATTTCTAGATACATGTGT 772
consensus_9538#2 CACGCATTAGTGTTTACTTGTATTTATTATAGAAAATAAGACATT--------------- 610
consensus_9538#1 CANACCCCTATTTTTGTTTGTGTGTCTATCACATA------------------------- 727
** * * *** **** * * * * * *
consensus_9538#0 TTATCTGCTCGGTTTTACGTACCACTTTTCGAATAAAATATAGGTTTCACAAAAAAAAAA 832
consensus_9538#2 ------------------------------------------------------------
consensus_9538#1 ------------------------------------------------------------
consensus_9538#0 AAAAAA 838
consensus_9538#2 ------
consensus_9538#1 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||