cluster # 9539

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9539 cluster # 9539 Sequences # 10 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9539#0 length = 1233 sequences # 5
consensus_9539#1 length = 644 sequences # 1
consensus_9539#2 length = 554 sequences # 1

consensus_9539#3 length = 486 sequences # 1
consensus_9539#4 length = 357 sequences # 1
consensus_9539#5 length = 336 sequences # 1

consensusID : consensus_9539#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1233
fasta sequence

                              [TCGGAAACACTTCANNGAGTTACTTCTTAAACCGCCATGTCATCAACATTGGATCATTTGAAAAAACATACTATTATCGTAGCGGACACTGGAGACTTTAATTCTATCAGAAAGTATTTACCAGTTGATTCAACAACAAATCCATCCCTAATTTTATCTGCATGCAAATTACCACAATATTCACAACTGTTAGATTCAGCAATTCAATATGCCAATAAACAAAAACAAACATTAAATGAACAAATTGAATTAGCGTTAGAAAGAATATTTGTATTATTCGGTTGCGAAATTTTGAAAATTGTACCAGGACGTGTATCTACTGAAGTGGATGCTCGTTATTCATTCAATGTACAAAAACAAGTAGAAGTAGCTTGTCGTCTGATTTCAATGTATGAAGAATTAGGATTCTCTAAGGAACGTGTACTTATTAAATTAAGTTCTACATGGGAAGGTATAAAAGCCGCAAAAATATTAGAATCTCAATATGGTATCCATTGTAATTTAACATTAATGTTTTCATTTTATCAGGCTATCGCTTGTGCTCAAGCTAATGTTACATTAATTTCACCATTTGTTGGACGTGTACTGGATTGGTATATAGCTAAACATGGTAAGAAAGAATATACTAGACATGATGATCCTGGTGTTAAATTGGTTACTCGTATCTATAATTACTATAAAGTCCATGGTTATAAAACACAGATAATGGGTGCTTCATTTAG-A--ATGTTGAACAAATTCTTGGTTTAGTTGGATGTGATTTATTAACAATAGCACCTAGTCTATTGGAAGAATTAAGTAAAATATCAGAAGAGCCCAGCGTATGCTTGTCTATAGATAAAGTTCAAACATCTTGTGATCATTTTTATCAATCGGATGAACATTTAACTGAAGAAGAATTTCGTTGGCAAATGAATGAAGATGAAATGGCTAATGATAAATTAGCAGATGGTATACGACGTTTTGCTAAAGATGCTTTATTATTAGAAGATTTAATTAAAACACGTATACAACAAAAACAACCATGATAAAGATCATCATCTCATAGATTGCATGTTTGTGTGTGTGTGTGTGAATCAAATGAATTCTGATGTTTTGTATACGTGATCGTTTTCAATCCGATCGTCTTGACTTTCATTAAATTGCAAAAATTCTTTATTTCTCCTTGATTCAGTTCATTCATGAGCATTCTTTACGTTTATTAGCATAAAGTAATTTATTAAAATTCATTACTTC]

[+] EMBL AI447072             [TCGGAAACACTTCANNGAGTTACTTCTTAAACCGCCATGTCATCAACATTGGATCATTTGAAAAAACATACTATTATCGTAGCGGACACTGGAGACTTTAATTCTATCAGAAAGTATTTACCAGTTGATTCAACAACAAATCCATCCCTAATTTTATCTGCATGCAAATTACCACAATATTCACAACTGTTAGATTCAGCAATTCAATATGCCAATAAACAAAAACAAACATTAAATGAACAAATTGAATTAGCGTTAGAAAGAATATTTGTATTATTCGGTTGCGAAATTTTGAAAATTGTACCAGGACGTGTATCTACTGAAGTGGATGCTCGTTATTCATTCAATGTACAAAAGCAAGTAGAAGTAGCTTGTCGTCTGATTTCAATGTATGAAGAATTAGGATTCTCTAAGGAACGTGTACTTATTAAATTAAGTTCTACATGGGAAGGTATAAAAGCCGCAAAAATATTAGAATCTCAATATGGTATCCATTGTAATTTAACATTAATGTTTTCATTTTATCAGGCTATCGCTTGTGCTCAAGCTAATGTTACATTAATTTCACCATTTGTTGGACGTGTACTGGATTGGTATATAGCTAAACATGGTAAG AAGGATATACTAGACATGATGATCCTGGTGTTAAATTGGTTACCCG ATCTATAATTACTATAAGGT CATGGTTATAAAAC CAGATAATGGGTGCCTCATTTAG A  ATGTTG ACAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD155051             [                                                                                                                                                                                              TAGATTCAGCAATTCAATATGCCAATAAACAAAAACAACCATTAAATGACCCAATTGAATTAGCGTTAGAAAGAATATTTGTATTATTCGGTTGCGAAATTTTGAAAATTGTACCAGGACGTGTATCTACTGAAGTGGATGCTCGTTATTCATTCAATGTACAAAAACAAGTAGAAGTAGCTTGTCGTCTGATTTCAATGTAAGAAGAATTAGGATTCTCTAAGGAACGTGTACTTATTAAATTAAGTTCTACATGGGAAGGTATAAAACCCGCAAAAATATTAGAATCTCAATATGGTATCCATTGTAATTTAACATTAATGTTTTCATTTAATCAGGCTATCGCTTGTGCTCAAGCTAATGTTACATTAATTTCACCATTTGTTGGACGTGTACTGGATTGGTATATAGATAAACATGGTAAGAAAGAATATACTAGACATGGTGATCCTGGTGTTAAATTGGTTACTCGTATCTATAATTACTATAAAGTCCATGGTTATAAAACACAGATAATGGGTGCTTCATTTAG AACATGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD164156             [                                                                                                                                                                                                                                                                                                            GTACCAGGACGTGTATCTACTGAAGTGGATGCTCGTTATTCATTCAATGTACAAAAACAAGTAGAAGTAGCTTGTCGTCTGATTTCAATGTATGAAGAATTAGGATTCTCTAAGGAACGTGTACTTATTAAATTAAGTTCTACATGGGAAGGTATAAAAGCCGCAAAAATATTAGAATCTCAATATGGTATCCATTGTAATTTAACATTAATGTTTTCATTTTATCAGGCTATCGCTTGTGCTCAAGCTAATGTTACATTAATTTCACCATTTGTTGGACGTGTACTGGATTGGTATATAGCTAAACATGGTAAGAAAGAATATACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD074408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TAATGTACCATTAATTTCACCATNTGTTGGACGTGTACTGGATTGGTATATAGCTAAACATGGTAAGAAAGAATATACTAGACATGATGATCCTGGTGTTAAATTGGTTACTCGTATCTATAATTACTATAAAGTCCATGGTTATAAAACACAGATAATGGGTGCTTCATTTAGAA  ATGTTGAACAAATTCTTGGTTTAGTTGGATGTGATTTATTAACAATAGCACCTAGTCTATTGGAAGAATTAAGTAAAATATCAGAAGAGCCCAGCGTATGCTTGTCTATAGATAAAGTTCAAACATCTTGTGATCATTTTTATCAATCGGATGAACATTTAACTGAAGAAGAATTTCGTTGGCAAATGAATGAAGATGAAATGGCTAATGATAAATTAGCAGATGGTATACGACGTTTTGCTAAAGATGCTTTATTATTAGAAGATTTAATTAAAACACGTATACAACAAAAACAACCATGATAAAGATCATCATCTCATAGATTGCATGTTTGTGTGTGTGTGTGTGAATCAAATGAATTCTGATGTTTTGTATACGTGATCGTTTTCAATCCGATCGTCTTGACTTTCATTAAATTGCAAAAATTCTTTATTTCTCCTTGATTCAGTTCATTCATGAGCATTCTTTACGTTTATTAGCATAAAG                        ]
[-] EMBL CD076988             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCATGGTTATAAAACACAGATAATGGGTGCTTCATTTAGAA  ATGTTGAACAAATTCTTGGTTTAGTTGGATGTGATTTATTAACAATAGCACCTAGTCTATTGGAAGAATTAAGTAAAATATCAGAAGAGCCCAGCGTATGCTTGTCTATAGATAAAGTTCAAACATCTTGTGATCATTTTTATCAATCGGATGAACATTTAACTGAAGAAGAATTTCGTTGGCAAATGAATGAAGATGAAATGGCTAATGATAAATTAGCAGATGGTATACGACGTTTTGCTAAAGATGCTTTATTATTAGAAGATTTAATTAAAACACGTATACAACAAAAACAACCATGATAAAGATCATCATCTCATAGATTGCATGTTTGTGTGTGTGTGTGTGAATCAAATGAATTCTGATGTTTTGTATACGTGATCGTTTTCAATCCGATCGTCTTGACTTTCATTAAATTGCAAAAATTCTTTATTTCTCCTTGATTCAGTTCATTCATGAGCATTCTTTACGTTTATTAGCATAAAGTAATTTATTAAAATTCATTACTTC]




>consensus_9539#0
TCGGAAACACTTCANNGAGTTACTTCTTAAACCGCCATGTCATCAACATTGGATCATTTG
AAAAAACATACTATTATCGTAGCGGACACTGGAGACTTTAATTCTATCAGAAAGTATTTA
CCAGTTGATTCAACAACAAATCCATCCCTAATTTTATCTGCATGCAAATTACCACAATAT
TCACAACTGTTAGATTCAGCAATTCAATATGCCAATAAACAAAAACAAACATTAAATGAA
CAAATTGAATTAGCGTTAGAAAGAATATTTGTATTATTCGGTTGCGAAATTTTGAAAATT
GTACCAGGACGTGTATCTACTGAAGTGGATGCTCGTTATTCATTCAATGTACAAAAACAA
GTAGAAGTAGCTTGTCGTCTGATTTCAATGTATGAAGAATTAGGATTCTCTAAGGAACGT
GTACTTATTAAATTAAGTTCTACATGGGAAGGTATAAAAGCCGCAAAAATATTAGAATCT
CAATATGGTATCCATTGTAATTTAACATTAATGTTTTCATTTTATCAGGCTATCGCTTGT
GCTCAAGCTAATGTTACATTAATTTCACCATTTGTTGGACGTGTACTGGATTGGTATATA
GCTAAACATGGTAAGAAAGAATATACTAGACATGATGATCCTGGTGTTAAATTGGTTACT
CGTATCTATAATTACTATAAAGTCCATGGTTATAAAACACAGATAATGGGTGCTTCATTT
AGAATGTTGAACAAATTCTTGGTTTAGTTGGATGTGATTTATTAACAATAGCACCTAGTC
TATTGGAAGAATTAAGTAAAATATCAGAAGAGCCCAGCGTATGCTTGTCTATAGATAAAG
TTCAAACATCTTGTGATCATTTTTATCAATCGGATGAACATTTAACTGAAGAAGAATTTC
GTTGGCAAATGAATGAAGATGAAATGGCTAATGATAAATTAGCAGATGGTATACGACGTT
TTGCTAAAGATGCTTTATTATTAGAAGATTTAATTAAAACACGTATACAACAAAAACAAC
CATGATAAAGATCATCATCTCATAGATTGCATGTTTGTGTGTGTGTGTGTGAATCAAATG
AATTCTGATGTTTTGTATACGTGATCGTTTTCAATCCGATCGTCTTGACTTTCATTAAAT
TGCAAAAATTCTTTATTTCTCCTTGATTCAGTTCATTCATGAGCATTCTTTACGTTTATT
AGCATAAAGTAATTTATTAAAATTCATTACTTC

consensusID : consensus_9539#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCGAGGCCANAATTCGGCACGAGGGTTGAAAATTGTACCAGGACGTGTATCTACTGAAGTGGATGCTCGTTATTCATTCAATGTACAAAAACAAGTAGAAGTAGCTTGTCGTCTGATTTCAATGTATGAAGAATTAGGATTCTCTAAGGAACGTGTACTTATTAAATTAAGTTCTACATGGGAAGGTATAAAAGCCGCAAAAATATTAGAATCTCAATATGGTACCCATTGTAATTTAACATTAATGTTTTCATTTTATCAGGCTATCGCTTGTGCTCAAGCTAATGTTACATTAATTTCACCATTTGTTGGACGTGTACTGGATTGGTATATAGCTAAACATGGTAAGAAAGAATATACTAGACATGATGATCCTGGTGTTAAATTGGTTACTCGTATCTATAATTACTATAAAGTCCATGGTTATAAAACACAGATAATGGGTGCTTCATTTAGAAATGTTGAACAAATTCTTGGTTTAGTTGGATGTGATTTATTAACAATAGCACCTAGTCTATTGGAAGAATTAAGTAAAATATCAGAAGAGCCCAGCGTATGCTTGTCTATAGATAAAGTTCANACATCTTGTGATCATTTTTATCAATCGGATGAACATTTAACTGAAGAAGAAATTCGTTGGGCAA]

[+] EMBL CD080498             [CCGAGGCCANAATTCGGCACGAGGGTTGAAAATTGTACCAGGACGTGTATCTACTGAAGTGGATGCTCGTTATTCATTCAATGTACAAAAACAAGTAGAAGTAGCTTGTCGTCTGATTTCAATGTATGAAGAATTAGGATTCTCTAAGGAACGTGTACTTATTAAATTAAGTTCTACATGGGAAGGTATAAAAGCCGCAAAAATATTAGAATCTCAATATGGTACCCATTGTAATTTAACATTAATGTTTTCATTTTATCAGGCTATCGCTTGTGCTCAAGCTAATGTTACATTAATTTCACCATTTGTTGGACGTGTACTGGATTGGTATATAGCTAAACATGGTAAGAAAGAATATACTAGACATGATGATCCTGGTGTTAAATTGGTTACTCGTATCTATAATTACTATAAAGTCCATGGTTATAAAACACAGATAATGGGTGCTTCATTTAGAAATGTTGAACAAATTCTTGGTTTAGTTGGATGTGATTTATTAACAATAGCACCTAGTCTATTGGAAGAATTAAGTAAAATATCAGAAGAGCCCAGCGTATGCTTGTCTATAGATAAAGTTCANACATCTTGTGATCATTTTTATCAATCGGATGAACATTTAACTGAAGAAGAAATTCGTTGGGCAA]




>consensus_9539#1
CCGAGGCCANAATTCGGCACGAGGGTTGAAAATTGTACCAGGACGTGTATCTACTGAAGT
GGATGCTCGTTATTCATTCAATGTACAAAAACAAGTAGAAGTAGCTTGTCGTCTGATTTC
AATGTATGAAGAATTAGGATTCTCTAAGGAACGTGTACTTATTAAATTAAGTTCTACATG
GGAAGGTATAAAAGCCGCAAAAATATTAGAATCTCAATATGGTACCCATTGTAATTTAAC
ATTAATGTTTTCATTTTATCAGGCTATCGCTTGTGCTCAAGCTAATGTTACATTAATTTC
ACCATTTGTTGGACGTGTACTGGATTGGTATATAGCTAAACATGGTAAGAAAGAATATAC
TAGACATGATGATCCTGGTGTTAAATTGGTTACTCGTATCTATAATTACTATAAAGTCCA
TGGTTATAAAACACAGATAATGGGTGCTTCATTTAGAAATGTTGAACAAATTCTTGGTTT
AGTTGGATGTGATTTATTAACAATAGCACCTAGTCTATTGGAAGAATTAAGTAAAATATC
AGAAGAGCCCAGCGTATGCTTGTCTATAGATAAAGTTCANACATCTTGTGATCATTTTTA
TCAATCGGATGAACATTTAACTGAAGAAGAAATTCGTTGGGCAA

consensusID : consensus_9539#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 554
fasta sequence

                              [GGCATGAATCGGCACGAGGGGAACGTGTACTTATTAAATTAAGTCTACATGGGAAGGTATAAAAGCCGCAAAAATATTAGAATCTCAATATGGTATCCATTGTAATTTAACATTAATGTTTTCATTTTATCAGGCTATCGCTTGTGCTCAAGCTAATGTTACATTAATTTCACCATTTGTTGGACGTGTACTGGATTGGTATATAGCTAAACATGGTAAGAAAGAATATACTAGACATGATGATCCTGGTGTTAAATTGGTTACTCGTATCTATAATTACTATAAAGTCCATGGTTATAAAACACAGATAATGGGTGCTTCATTTAGAAATGTTGAACAAATTCTTGGTTTAGTTGGATGTGATTTATTAACAATAGCACCTAGTCTATTGGAAGAATTAAGTAAAATATCAGAAGAGCCCAGCGTATGCTTGTCTATAGATAAAGTTCAAACATCTTGTGATCATTTTTATCAATCGGATGAACATTTAACTGAAGAAGATTTCGTTGGCAAATGAATGAAGATGAAATGGCTAATGATAAATTAGCAGATGG]

[+] EMBL CD083588             [GGCATGAATCGGCACGAGGGGAACGTGTACTTATTAAATTAAGTCTACATGGGAAGGTATAAAAGCCGCAAAAATATTAGAATCTCAATATGGTATCCATTGTAATTTAACATTAATGTTTTCATTTTATCAGGCTATCGCTTGTGCTCAAGCTAATGTTACATTAATTTCACCATTTGTTGGACGTGTACTGGATTGGTATATAGCTAAACATGGTAAGAAAGAATATACTAGACATGATGATCCTGGTGTTAAATTGGTTACTCGTATCTATAATTACTATAAAGTCCATGGTTATAAAACACAGATAATGGGTGCTTCATTTAGAAATGTTGAACAAATTCTTGGTTTAGTTGGATGTGATTTATTAACAATAGCACCTAGTCTATTGGAAGAATTAAGTAAAATATCAGAAGAGCCCAGCGTATGCTTGTCTATAGATAAAGTTCAAACATCTTGTGATCATTTTTATCAATCGGATGAACATTTAACTGAAGAAGATTTCGTTGGCAAATGAATGAAGATGAAATGGCTAATGATAAATTAGCAGATGG]




>consensus_9539#2
GGCATGAATCGGCACGAGGGGAACGTGTACTTATTAAATTAAGTCTACATGGGAAGGTAT
AAAAGCCGCAAAAATATTAGAATCTCAATATGGTATCCATTGTAATTTAACATTAATGTT
TTCATTTTATCAGGCTATCGCTTGTGCTCAAGCTAATGTTACATTAATTTCACCATTTGT
TGGACGTGTACTGGATTGGTATATAGCTAAACATGGTAAGAAAGAATATACTAGACATGA
TGATCCTGGTGTTAAATTGGTTACTCGTATCTATAATTACTATAAAGTCCATGGTTATAA
AACACAGATAATGGGTGCTTCATTTAGAAATGTTGAACAAATTCTTGGTTTAGTTGGATG
TGATTTATTAACAATAGCACCTAGTCTATTGGAAGAATTAAGTAAAATATCAGAAGAGCC
CAGCGTATGCTTGTCTATAGATAAAGTTCAAACATCTTGTGATCATTTTTATCAATCGGA
TGAACATTTAACTGAAGAAGATTTCGTTGGCAAATGAATGAAGATGAAATGGCTAATGAT
AAATTAGCAGATGG

consensusID : consensus_9539#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [CGGCACGAGGTCTATTGGANGAATTAAGTAAATTGTCAGAAGAGCCCAGCGTATGCTTGTCTATAGATAAAGCTCAAATTCTTGTGATCTTCTTATCATGCGGATGATATTTAACTGAAGAGGATTTCGTTGGCAAATGAGTGAAGATGAAATGGCTAATGATAAATTAGCAGATGGTATACGACGTTTTGCTAAAGATGCTTTATTATTAGAAGATTTAATTAAAACACGTATACAACAACAACAACAACAATCATGATAAAAATCATCATCTCATAGATTGCATGTTTGTGTGTGTGTGTGTGAATCAAATTGAATTCTGTTGTTTTGTATACGTGGTCATTTTCAATCCGATCGTCTTGACTTTCATTAAATTGCAAAAATTCTTCATTTCTCCGTGATTCAGTTCATTCATGAACATGCTTTACGTTTATTAGCATAAAGTAATTTATTAAAATTCATTACTTCTTAAAAAAAAAAAAAAAA]

[-] EMBL AI395158             [CGGCACGAGGTCTATTGGANGAATTAAGTAAATTGTCAGAAGAGCCCAGCGTATGCTTGTCTATAGATAAAGCTCAAATTCTTGTGATCTTCTTATCATGCGGATGATATTTAACTGAAGAGGATTTCGTTGGCAAATGAGTGAAGATGAAATGGCTAATGATAAATTAGCAGATGGTATACGACGTTTTGCTAAAGATGCTTTATTATTAGAAGATTTAATTAAAACACGTATACAACAACAACAACAACAATCATGATAAAAATCATCATCTCATAGATTGCATGTTTGTGTGTGTGTGTGTGAATCAAATTGAATTCTGTTGTTTTGTATACGTGGTCATTTTCAATCCGATCGTCTTGACTTTCATTAAATTGCAAAAATTCTTCATTTCTCCGTGATTCAGTTCATTCATGAACATGCTTTACGTTTATTAGCATAAAGTAATTTATTAAAATTCATTACTTCTTAAAAAAAAAAAAAAAA]




>consensus_9539#3
CGGCACGAGGTCTATTGGANGAATTAAGTAAATTGTCAGAAGAGCCCAGCGTATGCTTGT
CTATAGATAAAGCTCAAATTCTTGTGATCTTCTTATCATGCGGATGATATTTAACTGAAG
AGGATTTCGTTGGCAAATGAGTGAAGATGAAATGGCTAATGATAAATTAGCAGATGGTAT
ACGACGTTTTGCTAAAGATGCTTTATTATTAGAAGATTTAATTAAAACACGTATACAACA
ACAACAACAACAATCATGATAAAAATCATCATCTCATAGATTGCATGTTTGTGTGTGTGT
GTGTGAATCAAATTGAATTCTGTTGTTTTGTATACGTGGTCATTTTCAATCCGATCGTCT
TGACTTTCATTAAATTGCAAAAATTCTTCATTTCTCCGTGATTCAGTTCATTCATGAACA
TGCTTTACGTTTATTAGCATAAAGTAATTTATTAAAATTCATTACTTCTTAAAAAAAAAA
AAAAAA

consensusID : consensus_9539#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence

                              [AATTATGATTCTCTAAGGAACGTGTACTTATTAAATTAAGTTCTACATGGGAAGGTATAAAACCCGCAAAACTATTAGAATCTCAATATGGTATCCATTGTAATTCAACATTAATGATCTCATTTTATCAAGCTATCGCTTGCGCTCAAGCTAATGTTACATTAATTACACCATTTGTCGGACGTGTACTGGATTGGTATATACCTACACATGGAAAGAAAGAATATACTAGACATGATGATCCTGGCGTTAAATCGGATACTCTTATCTATAATTACTATAAAGTCCATGGTTATAAAACACACATAATGGCTGCTTTATTTATAAATGCGGAACAAATTCTTGGCTCAGTTGGAT]

[+] EMBL CD167049             [AATTATGATTCTCTAAGGAACGTGTACTTATTAAATTAAGTTCTACATGGGAAGGTATAAAACCCGCAAAACTATTAGAATCTCAATATGGTATCCATTGTAATTCAACATTAATGATCTCATTTTATCAAGCTATCGCTTGCGCTCAAGCTAATGTTACATTAATTACACCATTTGTCGGACGTGTACTGGATTGGTATATACCTACACATGGAAAGAAAGAATATACTAGACATGATGATCCTGGCGTTAAATCGGATACTCTTATCTATAATTACTATAAAGTCCATGGTTATAAAACACACATAATGGCTGCTTTATTTATAAATGCGGAACAAATTCTTGGCTCAGTTGGAT]




>consensus_9539#4
AATTATGATTCTCTAAGGAACGTGTACTTATTAAATTAAGTTCTACATGGGAAGGTATAA
AACCCGCAAAACTATTAGAATCTCAATATGGTATCCATTGTAATTCAACATTAATGATCT
CATTTTATCAAGCTATCGCTTGCGCTCAAGCTAATGTTACATTAATTACACCATTTGTCG
GACGTGTACTGGATTGGTATATACCTACACATGGAAAGAAAGAATATACTAGACATGATG
ATCCTGGCGTTAAATCGGATACTCTTATCTATAATTACTATAAAGTCCATGGTTATAAAA
CACACATAATGGCTGCTTTATTTATAAATGCGGAACAAATTCTTGGCTCAGTTGGAT

consensusID : consensus_9539#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence

                              [CGTGGCCATGTGATATTATTTGGAGAGGGAGAGCGGACTCTCCCCACCCTCGGCCGTACCAGGGGGCACAACAAACAAAAATACACTGATGAAATTTTTTCTGCATTATTCTTGTTATATTCACTTCAATTGAATATGCTTCATTTAAATGGCTTAATGTTTATTGATCAATGATGATTATTTTTTTATTATAACAAACAAAACACCCAGTTCAAACATCTTGTGATCATTTTTATCAATCGGATGAACATTTAACTGAAGAAGAATTTCGTTGGCAAATGAATGAAGATGAAATGGGCTATGATNAAATAGCAGATGGTATACGACGTTNTGCTA]

[+] EMBL CD171532             [CGTGGCCATGTGATATTATTTGGAGAGGGAGAGCGGACTCTCCCCACCCTCGGCCGTACCAGGGGGCACAACAAACAAAAATACACTGATGAAATTTTTTCTGCATTATTCTTGTTATATTCACTTCAATTGAATATGCTTCATTTAAATGGCTTAATGTTTATTGATCAATGATGATTATTTTTTTATTATAACAAACAAAACACCCAGTTCAAACATCTTGTGATCATTTTTATCAATCGGATGAACATTTAACTGAAGAAGAATTTCGTTGGCAAATGAATGAAGATGAAATGGGCTATGATNAAATAGCAGATGGTATACGACGTTNTGCTA]




>consensus_9539#5
CGTGGCCATGTGATATTATTTGGAGAGGGAGAGCGGACTCTCCCCACCCTCGGCCGTACC
AGGGGGCACAACAAACAAAAATACACTGATGAAATTTTTTCTGCATTATTCTTGTTATAT
TCACTTCAATTGAATATGCTTCATTTAAATGGCTTAATGTTTATTGATCAATGATGATTA
TTTTTTTATTATAACAAACAAAACACCCAGTTCAAACATCTTGTGATCATTTTTATCAAT
CGGATGAACATTTAACTGAAGAAGAATTTCGTTGGCAAATGAATGAAGATGAAATGGGCT
ATGATNAAATAGCAGATGGTATACGACGTTNTGCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9539#1      ------------------------------------------------------------
consensus_9539#4      ------------------------------------------------------------
consensus_9539#2      ------------------------------------------------------------
consensus_9539#0      TCGGAAACACTTCANNGAGTTACTTCTTAAACCGCCATGTCATCAACATTGGATCATTTG 60
consensus_9539#3      ------------------------------------------------------------
consensus_9539#5      ------------------------------------------------------------
                                                                                  

consensus_9539#1      ------------------------------------------------------------
consensus_9539#4      ------------------------------------------------------------
consensus_9539#2      ------------------------------------------------------------
consensus_9539#0      AAAAAACATACTATTATCGTAGCGGACACTGGAGACTTTAATTCTATCAGAAAGTATTTA 120
consensus_9539#3      ------------------------------------------------------------
consensus_9539#5      ------------------------------------------------------------
                                                                                  

consensus_9539#1      ------------------------------------------------------------
consensus_9539#4      ------------------------------------------------------------
consensus_9539#2      ------------------------------------------------------------
consensus_9539#0      CCAGTTGATTCAACAACAAATCCATCCCTAATTTTATCTGCATGCAAATTACCACAATAT 180
consensus_9539#3      ------------------------------------------------------------
consensus_9539#5      ------------------------------------------------------------
                                                                                  

consensus_9539#1      ------------------------------------------------------------
consensus_9539#4      ------------------------------------------------------------
consensus_9539#2      ------------------------------------------------------------
consensus_9539#0      TCACAACTGTTAGATTCAGCAATTCAATATGCCAATAAACAAAAACAAACATTAAATGAA 240
consensus_9539#3      ------------------------------------------------------------
consensus_9539#5      ------------------------------------------------------------
                                                                                  

consensus_9539#1      -------------------------CCGAGGCCANAATTCGGCACGAGGGTT-GAAAATT 34
consensus_9539#4      ------------------------------------------------------------
consensus_9539#2      ------------------------------------------------------------
consensus_9539#0      CAAATTGAATTAGCGTTAGAAAGAATATTTGTATTATTCGGTTGCGAAATTTTGAAAATT 300
consensus_9539#3      ------------------------------------------------------------
consensus_9539#5      ------------------------------------------------------------
                                                                                  

consensus_9539#1      GTACCAGGACGTGTATCTACTGAAGTGGATGCTCGTTATTCATTCAATGTACAAAAACAA 94
consensus_9539#4      ------------------------------------------------------------
consensus_9539#2      ------------------------------------------------------------
consensus_9539#0      GTACCAGGACGTGTATCTACTGAAGTGGATGCTCGTTATTCATTCAATGTACAAAAACAA 360
consensus_9539#3      ------------------------------------------------------------
consensus_9539#5      ------------------------------------------------------------
                                                                                  

consensus_9539#1      GTAGAAGTAGCTTGTCGTCTGATTTCAATGTATGAAGAATTAGGATTCTCTA----AGGA 150
consensus_9539#4      -------------------------------------AATTATGATTCTCTA----AGGA 19
consensus_9539#2      --------------------------------------GGCATGAATCGGCACGAGGGGA 22
consensus_9539#0      GTAGAAGTAGCTTGTCGTCTGATTTCAATGTATGAAGAATTAGGATTCTCTA----AGGA 416
consensus_9539#3      -------------------------------------CGGCACGAGGTCTATTGGANGAA 23
consensus_9539#5      ------------------------------CGTGGCCATGTGATATTATTTGGAGAGGGA 30
                                                                  *            * *

consensus_9539#1      ACGTGTACTTATTAAATTAAGTTCTACATGGGAAGGTATAAAAGCCGCA---AAAATATT 207
consensus_9539#4      ACGTGTACTTATTAAATTAAGTTCTACATGGGAAGGTATAAAACCCGCA---AAACTATT 76
consensus_9539#2      ACGTGTACTTATTAAATTAAGT-CTACATGGGAAGGTATAAAAGCCGCA---AAAATATT 78
consensus_9539#0      ACGTGTACTTATTAAATTAAGTTCTACATGGGAAGGTATAAAAGCCGCA---AAAATATT 473
consensus_9539#3      TTAAGTAAATTGTCAGAAGAGCCCAGCGTATGCTTGTCTATAGATAAAGCTCAAATTCTT 83
consensus_9539#5      GAGCGGACTCTCCCCACCCTCGGCCGTACCAGGGGGCACAACAAACAAAAATACACTGAT 90
                          * *                *       *   *   *            * * *  *

consensus_9539#1      AGAATCT---CAATATGGTACCCATTGTAATTTAACATTAATGTTTTCATTTTATC-AGG 263
consensus_9539#4      AGAATCT---CAATATGGTATCCATTGTAATTCAACATTAATGATCTCATTTTATC-AAG 132
consensus_9539#2      AGAATCT---CAATATGGTATCCATTGTAATTTAACATTAATGTTTTCATTTTATC-AGG 134
consensus_9539#0      AGAATCT---CAATATGGTATCCATTGTAATTTAACATTAATGTTTTCATTTTATC-AGG 529
consensus_9539#3      GTGATCT---TCTTATCATGCGGATGATATTTAACTGAAGAGGATTTCGT--TGGC-AAA 137
consensus_9539#5      GAAATTTTTTCTGCATTATTCTTGTTATA-TTCACTTCAATTGAATATGCTTCATTTAAA 149
                         ** *       **  *     *  ** ** *        *              *  

consensus_9539#1      CTATCGCTTGTGCTCAAGCTAATGTTACATTAAT------TTCACCATTTGTTGG-ACGT 316
consensus_9539#4      CTATCGCTTGCGCTCAAGCTAATGTTACATTAAT------TACACCATTTGTCGG-ACGT 185
consensus_9539#2      CTATCGCTTGTGCTCAAGCTAATGTTACATTAAT------TTCACCATTTGTTGG-ACGT 187
consensus_9539#0      CTATCGCTTGTGCTCAAGCTAATGTTACATTAAT------TTCACCATTTGTTGG-ACGT 582
consensus_9539#3      TGAGTGAAGATGAAATGGCTAATGATAAATTAGCAGATGGTATACGACGTTTTGCTAAAG 197
consensus_9539#5      TGGCTTAATGTTTATTGATCAATGATG-ATTATT------TTTTTATTATAACAAACAAA 202
                                          **** *  ****        *        *          

consensus_9539#1      GTACTGGATTGGTATATAGCTAAACATGGTAAGAAAGAATATACTAGACATGATGATCCT 376
consensus_9539#4      GTACTGGATTGGTATATACCTACACATGGAAAGAAAGAATATACTAGACATGATGATCCT 245
consensus_9539#2      GTACTGGATTGGTATATAGCTAAACATGGTAAGAAAGAATATACTAGACATGATGATCCT 247
consensus_9539#0      GTACTGGATTGGTATATAGCTAAACATGGTAAGAAAGAATATACTAGACATGATGATCCT 642
consensus_9539#3      ATGCTTTATTATTAGAAGATTTAATTAAAACACGTATACAACAACAACAACAACAATCAT 257
consensus_9539#5      ACACCCAGTT--CAAACATCTTGTGATCATTTTTATCAATCGGATGAACATT-TAA--CT 257
                         *    **   * *    *                *           *     *   *

consensus_9539#1      GGTGTTAAATTGGTTACTCGTATCTATAATTACTATAAAGTCCATGGTTATAAAACACAG 436
consensus_9539#4      GGCGTTAAATCGGATACTCTTATCTATAATTACTATAAAGTCCATGGTTATAAAACACAC 305
consensus_9539#2      GGTGTTAAATTGGTTACTCGTATCTATAATTACTATAAAGTCCATGGTTATAAAACACAG 307
consensus_9539#0      GGTGTTAAATTGGTTACTCGTATCTATAATTACTATAAAGTCCATGGTTATAAAACACAG 702
consensus_9539#3      GATAA-AAATCATCATCTCATAGATTGCATGTTTGT---GTGTGTGTGTGTGAATCAAAT 313
consensus_9539#5      GAAGAAGAATTTCGTTGGCAAATGAATGAAGATGAAATGGGCTATGATNAAATAGCAGAT 317
                      *      ***        *  *      *          *    **       * ** * 

consensus_9539#1      ATAATGGGTGCTTCATTTAGAAATGTTGAACAAATTCTTGGTTTAGTTGGATGTGATTTA 496
consensus_9539#4      ATAATGGCTGCTTTATTTATAAATGCGGAACAAATTCTTGGCTCAGTTGGAT-------- 357
consensus_9539#2      ATAATGGGTGCTTCATTTAGAAATGTTGAACAAATTCTTGGTTTAGTTGGATGTGATTTA 367
consensus_9539#0      ATAATGGGTGCTTCATTTAGAA-TGTTGAACAAATTCTTGGTTTAGTTGGATGTGATTTA 761
consensus_9539#3      TGAATTCTGTTGTTTTGTATACGTGGTCATTTTCAATCCGATCGTCTTGACTTTCATTAA 373
consensus_9539#5      GGTATACGACGTTNTGCTA----------------------------------------- 336
                         **       *    **                                         

consensus_9539#1      TTAACAATAGCACCTAGTCTATTGGAAGAATTAAGTAAAATATCAGAAGAGCCCAGCGTA 556
consensus_9539#4      ------------------------------------------------------------
consensus_9539#2      TTAACAATAGCACCTAGTCTATTGGAAGAATTAAGTAAAATATCAGAAGAGCCCAGCGTA 427
consensus_9539#0      TTAACAATAGCACCTAGTCTATTGGAAGAATTAAGTAAAATATCAGAAGAGCCCAGCGTA 821
consensus_9539#3      ATTGCAAAAATTCTTCATTTCTCCGT--GATTCAGTTCATTCATGAACATGCTTTACGTT 431
consensus_9539#5      ------------------------------------------------------------
                                                                                  

consensus_9539#1      TGCTTGTCTATAGATAAAGTTCANACATCTTGTGATCATTTTTATCAATCGGATGAACAT 616
consensus_9539#4      ------------------------------------------------------------
consensus_9539#2      TGCTTGTCTATAGATAAAGTTCAAACATCTTGTGATCATTTTTATCAATCGGATGAACAT 487
consensus_9539#0      TGCTTGTCTATAGATAAAGTTCAAACATCTTGTGATCATTTTTATCAATCGGATGAACAT 881
consensus_9539#3      TATTAGC--ATAAAGTAATTTATTAAAATTCATTACTTCTTAAAAAAAAAAAAAAAA--- 486
consensus_9539#5      ------------------------------------------------------------
                                                                                  

consensus_9539#1      TTAACTGAAGAAGAAATTCGTTGGGCAA-------------------------------- 644
consensus_9539#4      ------------------------------------------------------------
consensus_9539#2      TTAACTGAAGAAGAT-TTCGTTGGCAAATGAATGAAGATGAAATGGCTAATGATAAATTA 546
consensus_9539#0      TTAACTGAAGAAGAATTTCGTTGGCAAATGAATGAAGATGAAATGGCTAATGATAAATTA 941
consensus_9539#3      ------------------------------------------------------------
consensus_9539#5      ------------------------------------------------------------
                                                                                  

consensus_9539#1      ------------------------------------------------------------
consensus_9539#4      ------------------------------------------------------------
consensus_9539#2      GCAGATGG---------------------------------------------------- 554
consensus_9539#0      GCAGATGGTATACGACGTTTTGCTAAAGATGCTTTATTATTAGAAGATTTAATTAAAACA 1001
consensus_9539#3      ------------------------------------------------------------
consensus_9539#5      ------------------------------------------------------------
                                                                                  

consensus_9539#1      ------------------------------------------------------------
consensus_9539#4      ------------------------------------------------------------
consensus_9539#2      ------------------------------------------------------------
consensus_9539#0      CGTATACAACAAAAACAACCATGATAAAGATCATCATCTCATAGATTGCATGTTTGTGTG 1061
consensus_9539#3      ------------------------------------------------------------
consensus_9539#5      ------------------------------------------------------------
                                                                                  

consensus_9539#1      ------------------------------------------------------------
consensus_9539#4      ------------------------------------------------------------
consensus_9539#2      ------------------------------------------------------------
consensus_9539#0      TGTGTGTGTGAATCAAATGAATTCTGATGTTTTGTATACGTGATCGTTTTCAATCCGATC 1121
consensus_9539#3      ------------------------------------------------------------
consensus_9539#5      ------------------------------------------------------------
                                                                                  

consensus_9539#1      ------------------------------------------------------------
consensus_9539#4      ------------------------------------------------------------
consensus_9539#2      ------------------------------------------------------------
consensus_9539#0      GTCTTGACTTTCATTAAATTGCAAAAATTCTTTATTTCTCCTTGATTCAGTTCATTCATG 1181
consensus_9539#3      ------------------------------------------------------------
consensus_9539#5      ------------------------------------------------------------
                                                                                  

consensus_9539#1      ----------------------------------------------------
consensus_9539#4      ----------------------------------------------------
consensus_9539#2      ----------------------------------------------------
consensus_9539#0      AGCATTCTTTACGTTTATTAGCATAAAGTAATTTATTAAAATTCATTACTTC 1233
consensus_9539#3      ----------------------------------------------------
consensus_9539#5      ----------------------------------------------------