cluster # 9540

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Schistosoma mansoni
cluster # 9540 cluster # 9540 Sequences # 10 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9540#0 length = 683 sequences # 2
consensus_9540#1 length = 678 sequences # 1
consensus_9540#2 length = 648 sequences # 3

consensus_9540#3 length = 610 sequences # 2
consensus_9540#4 length = 483 sequences # 1
consensus_9540#5 length = 299 sequences # 1

consensusID : consensus_9540#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 683
fasta sequence

                              [TTATGTTAACTTACCAATGTTCTGGTCTAATCATCATTCTACTACTACTCCTACACCTTCGTCAATGTTTTCTAGGTCATCCACATCATGTCAACGACAACATTCTACTGATGTGACGACGACGGCAACAACGACAATTGAGCCTCGATTGTATGCTAATATAATGCCGTCCAATACTATCAGTAAATATCAATCAGTTAGAAATAAACAACAAAGTAAAACTGACTTCAGTTTATTATCCAAAAATCATATTCGTCATAGTGGTAGTGGTATTCCTCCCTCTGAGGCTGACTGTACTGGTAATAGTAGTAGTAGTAGTAATAGTTCATTAACTGGCGAGTCACAGCTGCCATCAGGTGTTGTAATTGATCATAATTCAAAAATTATGGATATATCAGAGAAATCTCACTCTCTGGACCCTACTTTAGTAATAAATTTGATCCCTACTACAACAGCAACAATTCCTCAATATTGTCCAGTACCAGTAGTGGCGAGAGCACAAGAAGCAGCAAATTTACCCACTAACTCTGATTATTCAAACCTACCTGATGAGGTTCGTGATCCTAGTCGGAATTATGCCATGGTCGATTTAAGACCTAGTCCAGCAAGTTCCACTATTCCACCTGCGAACCTATGTCATAGGTTCGCAGGAGTTTGAATTGATGCAGACAAATTGCTGCTGG]

[+] EMBL CD163371             [TTATGTTAACTTACCAATGTTCTGGTCTAATCATCATTCTACTACTACTCCTACACCTTCGTCAATGTTTTCTAGGTCATCCACATCATGTCAACGACAACATTCTACTGATGTGACGACGACGGCAACAACGACAATTGAGCCTCGATTGTATGCTAATATAATGCCGTCCAATACTATCAGTAAATATCAATCAGTTAGAAATAAACAACAAAGTAAAACTGACTTCAGTTTATTATCCAAAAATCATATTCGTCATAGTGGTAGTGGTATTCCTCCCTCTGAGGCTGACTGTACTGGTAATAGTAGTAGTAGTAGTAATAGTTCATTAACTGGCGAGTCACAGCTGCCATCAGGTGTTGTAATTGATCATAATTCAAAAATTATGGATATATCAGAGAAATCTCACTCTCTGGACCCTACTTTAGTAATAAATTTGATCCCTACTACAACAGCA                                                                                                                                                                                                                                  ]
[+] EMBL CD060748             [                                                                                                                                                                                                                                                                                                                                                                              TGATCATAATTCAAAAATTATGGATATATCAGAGAAATCTCACTCTCTGGACCCTACTTAAATAATTAATTAGATCCCTACTACAACAGCAACAATTCCTCAATATTGTCCAGTACCAGTAGTGGCGAGAGCACAAGAAGCAGCAAATTTACCCACTAACTCTGATTATTCAAACCTACCTGATGAGGTTCGTGATCCTAGTCGGAATTATGCCATGGTCGATTTAAGACCTAGTCCAGCAAGTTCCACTATTCCACCTGCGAACCTATGTCATAGGTTCGCAGGAGTTTGAATTGATGCAGACAAATTGCTGCTGG]




>consensus_9540#0
TTATGTTAACTTACCAATGTTCTGGTCTAATCATCATTCTACTACTACTCCTACACCTTC
GTCAATGTTTTCTAGGTCATCCACATCATGTCAACGACAACATTCTACTGATGTGACGAC
GACGGCAACAACGACAATTGAGCCTCGATTGTATGCTAATATAATGCCGTCCAATACTAT
CAGTAAATATCAATCAGTTAGAAATAAACAACAAAGTAAAACTGACTTCAGTTTATTATC
CAAAAATCATATTCGTCATAGTGGTAGTGGTATTCCTCCCTCTGAGGCTGACTGTACTGG
TAATAGTAGTAGTAGTAGTAATAGTTCATTAACTGGCGAGTCACAGCTGCCATCAGGTGT
TGTAATTGATCATAATTCAAAAATTATGGATATATCAGAGAAATCTCACTCTCTGGACCC
TACTTTAGTAATAAATTTGATCCCTACTACAACAGCAACAATTCCTCAATATTGTCCAGT
ACCAGTAGTGGCGAGAGCACAAGAAGCAGCAAATTTACCCACTAACTCTGATTATTCAAA
CCTACCTGATGAGGTTCGTGATCCTAGTCGGAATTATGCCATGGTCGATTTAAGACCTAG
TCCAGCAAGTTCCACTATTCCACCTGCGAACCTATGTCATAGGTTCGCAGGAGTTTGAAT
TGATGCAGACAAATTGCTGCTGG

consensusID : consensus_9540#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence

                              [GTGTTGGGCACTGTGACATGNNTGTTAATCCAGTTCGTGATCCAGTTCTATGATGATCTAAATNTAATGGATANCCAGTATTAANCGAAGATGAAGATATGGAGGGGCAGGTGTTGTTAAATTCGCTGAAATAAATGNTGTAGAATTATTGGTGATTCCTGTCATAGAATTACTAGTAGTAGTAATAGTTCATTAACTGGCGAGTCACAGCTGCCATCAGGTGTTGTAATTGATCATAATTCAAAAATTATGGATATATCAGAGAAATCTCACTCTCTGGACCCTACTTCAGTAATTAATTTGATCCCTACTACAACAGCAACAATTCCTCAATATTGTCCAGTAGCAGTAGTGGCGAGAGCACAAGAAGCAGCAAATTTACCCACTAACTCTGATTATTCAAACCTACCTGATGAGGTTCGTGATCCTAGTCGGAATTATGCCATGGTCGATTTAAGACCTAGTCCAGCAAGTTCCACTATTCCACCTGCAGAATTAACACTGAACATAATTCAACATCATAACGATAATCGTACTGGTCAATTTACAACATGTAACAGTAGTAGTACTACTACTACAACTTGTGTTACAAGTATCCGAAACTCTTCTAATCATGAAATATTTACAGCAGATGAAGACTACTGGGATTTACGTGATAATAGTAATTGTCAACATAAA]

[-] EMBL CD096356             [GTGTTGGGCACTGTGACATGNNTGTTAATCCAGTTCGTGATCCAGTTCTATGATGATCTAAATNTAATGGATANCCAGTATTAANCGAAGATGAAGATATGGAGGGGCAGGTGTTGTTAAATTCGCTGAAATAAATGNTGTAGAATTATTGGTGATTCCTGTCATAGAATTACTAGTAGTAGTAATAGTTCATTAACTGGCGAGTCACAGCTGCCATCAGGTGTTGTAATTGATCATAATTCAAAAATTATGGATATATCAGAGAAATCTCACTCTCTGGACCCTACTTCAGTAATTAATTTGATCCCTACTACAACAGCAACAATTCCTCAATATTGTCCAGTAGCAGTAGTGGCGAGAGCACAAGAAGCAGCAAATTTACCCACTAACTCTGATTATTCAAACCTACCTGATGAGGTTCGTGATCCTAGTCGGAATTATGCCATGGTCGATTTAAGACCTAGTCCAGCAAGTTCCACTATTCCACCTGCAGAATTAACACTGAACATAATTCAACATCATAACGATAATCGTACTGGTCAATTTACAACATGTAACAGTAGTAGTACTACTACTACAACTTGTGTTACAAGTATCCGAAACTCTTCTAATCATGAAATATTTACAGCAGATGAAGACTACTGGGATTTACGTGATAATAGTAATTGTCAACATAAA]




>consensus_9540#1
GTGTTGGGCACTGTGACATGNNTGTTAATCCAGTTCGTGATCCAGTTCTATGATGATCTA
AATNTAATGGATANCCAGTATTAANCGAAGATGAAGATATGGAGGGGCAGGTGTTGTTAA
ATTCGCTGAAATAAATGNTGTAGAATTATTGGTGATTCCTGTCATAGAATTACTAGTAGT
AGTAATAGTTCATTAACTGGCGAGTCACAGCTGCCATCAGGTGTTGTAATTGATCATAAT
TCAAAAATTATGGATATATCAGAGAAATCTCACTCTCTGGACCCTACTTCAGTAATTAAT
TTGATCCCTACTACAACAGCAACAATTCCTCAATATTGTCCAGTAGCAGTAGTGGCGAGA
GCACAAGAAGCAGCAAATTTACCCACTAACTCTGATTATTCAAACCTACCTGATGAGGTT
CGTGATCCTAGTCGGAATTATGCCATGGTCGATTTAAGACCTAGTCCAGCAAGTTCCACT
ATTCCACCTGCAGAATTAACACTGAACATAATTCAACATCATAACGATAATCGTACTGGT
CAATTTACAACATGTAACAGTAGTAGTACTACTACTACAACTTGTGTTACAAGTATCCGA
AACTCTTCTAATCATGAAATATTTACAGCAGATGAAGACTACTGGGATTTACGTGATAAT
AGTAATTGTCAACATAAA

consensusID : consensus_9540#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 648
fasta sequence

                              [GCCTCCGAGGCAGATCGGCACGAGGCGTAATGGTAACCCTCCAATATGTACACAATACCAACTAATATTGGTAGCAGTGTAATTGATGATTTAGGCATTGCATCATCATCATTCTCATCAGATACAAGTAGTAATCCACGATCTGTCTCTCCAACCCATCATCATCAACAACAACAACAGTTAACGAAAAGGCGTAGTCGTGATAGTATTTTTAATCCTTTACGAAAAATATCATCTGGACATCATAATTTTAATTTATTTAAAGCAAATGATTATCAATCTTCAACAATAGATCGTCTTTTCAGTAAACAAACTATGTCACAATTCATTGTTACTACTGCCACTACTACTACTACTATTAATACTGCTACTACAACCACTTCTGGTACTGAACAATCATTAGTTCCTGTATTACATTCTAAATATAGTTGGAATTTCCAAAGAACGTCATCTTTATCTCCTCCAGATATGATTGTTAATGATTCCATATTGGATAGTTATAATCCTAATTCATTGTCAAGATTTGATCATTTACATGAAAATAGTTTTAAAGAACAATTTAATCTTAGTGGCGGTGGTGGTGTCAGTGTTGTTGCTACAACAATTGGAGTAACAACTAATAATAATATTCAAGAAGGTAACAATAGT]

[+] EMBL CD083354             [GCCTCCGAGGCAGATCGGCACGAGGCGTAATGGTAACCCTCCAATATGTACACAATACCAACTAATATTGGTAGCAGTGTAATTGATGATTTAGGCATTGCATCATCATCATTCTCATCAGATACAAGTAGTAATCCACGATCTGTCTCTCCAACCCATCATCATCAACAACAACAACAGTTAACGAAAAGGCGTAGTCGTGATAGTATTTTTAATCCTTTACGAAAAATATCATCTGGACATCATAATTTTAATTTATTTAAAGCAAATGATTATCAATCTTCAACAATAGATCGTCTTTTCAGTAAACAAACTATGTCACAATTCATTGTTACTACTGCCACTACTACTACTACTATTAATACTGCTACTACAACCACTTCTGGTACTGAACAATCATTAGTTCCTGTATTACATTCTAAATATAGTTGGAATTTCCAAAGAACGTCATCTTTATCTCCTCCAGATATGATTGTTAATGATTCCATATTGGATAGTTATAATCCTAATTCATTGTCAAGATTTG                                                                                                                          ]
[+] EMBL CD118005             [                                                                                                                                                                         AACAACAACAGTTAACGAAAAGGCGTAGTCGTGATAGTATTTTTAATCCTTTACGAAAAATATCATCTGGACATCATAATTTTAATTTATTTAAAGCGAATGATTATCAATCTTCAACAATAGATCGTCTTTTCAGTAAACAAACTATGTCACAATTCATTGTTACTACTGCCACTACTACTACTACTATTAATACTGCTACTACAACCACTTCTGGTACTGAACAATCATTAGTTCCTGTATTACATTCTAAATATAGTTGGAATTTCCAAAGAACGTCATCTTTATCTCCTCCAGATATGATTGTTAATGATTCCATATTGGATAGTTATAATCCTAATTCATTGTCAAGATTTGATCATTTACATGAAAATAGTTTTAAAGAACAATTTAATCTTAGTGGCGGTGGTGGTGTCAGTGTTGTTGCTACAACAATTGGAGTAACAACTAATAATAATATTCAAGAAGGTAACAATAGT]
[+] EMBL CD195989             [                                                                                                                                                                              CAACAGTTAACGAAAAGGCGTAGCCGTGATAGTATTTTTAATCCTTTACGAAAAATATCATCTGGACATCATAATTTTAATTTATTTAAAGCAAATGATTATCAATCTTCAACAATAGATCGTCTTTTCAGTAAACAAACTATGTCACAATTCATTGTTACTACTGCCACTACTACTACTACTATTAATACTGCTACTACAACCACTTCTGGTACTGAACAATCATTAGCTGCTGTATTACATTCTAAAT                                                                                                                                                                                                                                ]




>consensus_9540#2
GCCTCCGAGGCAGATCGGCACGAGGCGTAATGGTAACCCTCCAATATGTACACAATACCA
ACTAATATTGGTAGCAGTGTAATTGATGATTTAGGCATTGCATCATCATCATTCTCATCA
GATACAAGTAGTAATCCACGATCTGTCTCTCCAACCCATCATCATCAACAACAACAACAG
TTAACGAAAAGGCGTAGTCGTGATAGTATTTTTAATCCTTTACGAAAAATATCATCTGGA
CATCATAATTTTAATTTATTTAAAGCAAATGATTATCAATCTTCAACAATAGATCGTCTT
TTCAGTAAACAAACTATGTCACAATTCATTGTTACTACTGCCACTACTACTACTACTATT
AATACTGCTACTACAACCACTTCTGGTACTGAACAATCATTAGTTCCTGTATTACATTCT
AAATATAGTTGGAATTTCCAAAGAACGTCATCTTTATCTCCTCCAGATATGATTGTTAAT
GATTCCATATTGGATAGTTATAATCCTAATTCATTGTCAAGATTTGATCATTTACATGAA
AATAGTTTTAAAGAACAATTTAATCTTAGTGGCGGTGGTGGTGTCAGTGTTGTTGCTACA
ACAATTGGAGTAACAACTAATAATAATATTCAAGAAGGTAACAATAGT

consensusID : consensus_9540#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 610
fasta sequence

                              [CAGTAGTACTTGGTGATGTTATTAATGTTGTTGTTGGCACTGTGGACATCGTTGTTAATCCAGTTCGTGATCCAGTTCTATGATGATCTAAATTTAATGGATTACCAGTATTAAACGAAGATGAAGATATGGAAGGGGCAGGTGTTGTTAAATTCGCTGAAATAAATGTTGTAGAATTATTGGTGATTCCTGTCATAGAATTACTCGTAGTAGTAATAGTAGAAGTACTGGTGGAGTTATTATTACTATTGTTTGATAATAATTGATTTGCACTTTGTGCAGGCATTGTCATTGTATATGCTTTATCAACATGGTCTAGTCGCCAGTTACAAATAAATTTACATCCAGTTGACGGTTCACCTATTAAACACAGCCGCCAGTGTTGTACATGCAAACTGCCTTGAAGACCTTGAAATAGCTTACTGCCATCACCACTATGACGTAATGTGACTCGAAATCGATTGTCAACAACGATACGAGCTAAATTATCAGCCCAACAGAACATTTCATCCATACCGGCTAGAGCTAATGCATACACAGATGATCCACCAATTAAGACTATAATATTTGATTCTTTATCCATATGATAACCACTTTCAAAACCTGTGAN]

[+] EMBL CD093377             [CAGTAGTACTTGGTGATGTTATTAATGTTGTTGTTGGCACTGTGGACATCGTTGTTAATCCAGTTCGTGATCCAGTTCTATGATGATCTAAATTTAATGGATTACCAGTATTAAACGAAGATGAAGATATGGAAGGGGCAGGTGTTGTTAAATTCGCTGAAATAAATGTTGTAGAATTATTGGTGATTCCTGTCATAGAATTACTCGTAGTAGTAATAGTAGAAGTACTGGTGGAGTTATTATTACTATTGTTTGATAATAATTGATTTGCACTTTGTGCAGGCATTGTCATTGTATATGCTTTATCAACATGGTCTAGTCGCCAGTTACAAATAAATTTACATCCAGTTGACGGTTCACCTATTAAACACAGCCGCCAGTGTTGTACATGCAAACTGCCTTGAAGACCTTGAAATAGCTTACTGCCATCACCACTATGACGTAATGTGACTCGAAATCGATTGTCAACAACGATACGAGCTAAATTATCAGCCCAACAGAACATTTCATCCATACCGGCTAGAGCTAATGCATACACAGATGATCCACCAATTAAGACTATAATATTTGATTCTTTATCCATATGATAACCACTTTCAAAACCTGTGAN]
[+] EMBL CD146754             [                                                                                                                      AGATGAAGATATGGAAGGGGCAGGTGTTGTTAAATTCGCTGAAATAAATGTTGTAGAATTATTGGTGATTCCTGTCATAGAATTACTCGTAGTAGTAATAGTAGAAGTACTGGTGGAGTTATTATTACTATTGTTTGATAATAATTGATTTGCACTTTGTGCAGGCATTGTCATTGTATATGCTTTATCAACATGGTCTAGTCGCCAGTTACAAATAAATTTACATCCAGTTGACGGTTCACCTATTAAACACAGCCGCCAGTGTTGTACATGCAAACTGCCTTGAAGACCTTGAAATAGCTTACTGCCATCACCACTATGACGTAATGTGACTCGAAATCGATTGTCAACAACGATACGAGCTAAATTATCAGCCCAACAGAACATTTCATCCATACCGGCTAGAGCTAATGCATACACAGATGATCCACCAATTAAGACTATAATATTTGATTCTTTATCCATATGAT                      ]




>consensus_9540#3
CAGTAGTACTTGGTGATGTTATTAATGTTGTTGTTGGCACTGTGGACATCGTTGTTAATC
CAGTTCGTGATCCAGTTCTATGATGATCTAAATTTAATGGATTACCAGTATTAAACGAAG
ATGAAGATATGGAAGGGGCAGGTGTTGTTAAATTCGCTGAAATAAATGTTGTAGAATTAT
TGGTGATTCCTGTCATAGAATTACTCGTAGTAGTAATAGTAGAAGTACTGGTGGAGTTAT
TATTACTATTGTTTGATAATAATTGATTTGCACTTTGTGCAGGCATTGTCATTGTATATG
CTTTATCAACATGGTCTAGTCGCCAGTTACAAATAAATTTACATCCAGTTGACGGTTCAC
CTATTAAACACAGCCGCCAGTGTTGTACATGCAAACTGCCTTGAAGACCTTGAAATAGCT
TACTGCCATCACCACTATGACGTAATGTGACTCGAAATCGATTGTCAACAACGATACGAG
CTAAATTATCAGCCCAACAGAACATTTCATCCATACCGGCTAGAGCTAATGCATACACAG
ATGATCCACCAATTAAGACTATAATATTTGATTCTTTATCCATATGATAACCACTTTCAA
AACCTGTGAN

consensusID : consensus_9540#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [ATGATGATGGGTTGGAGAGACAGATCGTGGATTACTACTTGTATCTGATGAGGTTCGTGATCCTAGTCGGAATTATGCCATGGTCGATTTAAGACCTAGTCCAGCAAGTTCCACTATTCCACCTGCAGAATTAACACTGAACATAATTCAACATCATAACGATAATCGTACTGGTCAATTTACAACATGTATCAGTAGTAGTACTACTACTACTACTATTAATACTGCTACTACAACCACTTCTGGTACTGAACAATCATTAGTTCCTGTATTACATTCTAAATATAGTTGGAATTTCCAAAGAACGTCATCTTTATCTCCTCCAGATATGATTGTTAATGATTCCATATTGGATAGTTATAATCCTAATTCATTGTCAAGATTTGATCATTTACATGAAAATAGTTTTAAAGAACAATTTAATCTTAGTGGCGGTGGTGGTGTCAGTGTTGTTGCTACAACAATTGGAGTAACAACTAATAA]

[+] EMBL CD153149             [ATGATGATGGGTTGGAGAGACAGATCGTGGATTACTACTTGTATCTGATGAGGTTCGTGATCCTAGTCGGAATTATGCCATGGTCGATTTAAGACCTAGTCCAGCAAGTTCCACTATTCCACCTGCAGAATTAACACTGAACATAATTCAACATCATAACGATAATCGTACTGGTCAATTTACAACATGTATCAGTAGTAGTACTACTACTACTACTATTAATACTGCTACTACAACCACTTCTGGTACTGAACAATCATTAGTTCCTGTATTACATTCTAAATATAGTTGGAATTTCCAAAGAACGTCATCTTTATCTCCTCCAGATATGATTGTTAATGATTCCATATTGGATAGTTATAATCCTAATTCATTGTCAAGATTTGATCATTTACATGAAAATAGTTTTAAAGAACAATTTAATCTTAGTGGCGGTGGTGGTGTCAGTGTTGTTGCTACAACAATTGGAGTAACAACTAATAA]




>consensus_9540#4
ATGATGATGGGTTGGAGAGACAGATCGTGGATTACTACTTGTATCTGATGAGGTTCGTGA
TCCTAGTCGGAATTATGCCATGGTCGATTTAAGACCTAGTCCAGCAAGTTCCACTATTCC
ACCTGCAGAATTAACACTGAACATAATTCAACATCATAACGATAATCGTACTGGTCAATT
TACAACATGTATCAGTAGTAGTACTACTACTACTACTATTAATACTGCTACTACAACCAC
TTCTGGTACTGAACAATCATTAGTTCCTGTATTACATTCTAAATATAGTTGGAATTTCCA
AAGAACGTCATCTTTATCTCCTCCAGATATGATTGTTAATGATTCCATATTGGATAGTTA
TAATCCTAATTCATTGTCAAGATTTGATCATTTACATGAAAATAGTTTTAAAGAACAATT
TAATCTTAGTGGCGGTGGTGGTGTCAGTGTTGTTGCTACAACAATTGGAGTAACAACTAA
TAA

consensusID : consensus_9540#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [CAACAGTTAACGAAAAGGCGTAGTCGTGATAGTATTTTTAATCCTTTACGAAAAATATCATCTGGACATCATAATTTTAATTTATTTAAAGCAAATGATTATCAATCTTCAACAATAGATCGTCTTTTCAGTAAACAAACTATGTCACAATTCATTGTTACTACTGCCACTACTACTACTACTATTAATACTGCTACTACAACCACTTCTGGTACTGAACAATCATTAGTTCCTGTATTACATTCTGAATATAGTTGGAATTTCCAAAGAACGTCATCTTTATCTCTGGGTTAACACCA]

[+] EMBL CD196049             [CAACAGTTAACGAAAAGGCGTAGTCGTGATAGTATTTTTAATCCTTTACGAAAAATATCATCTGGACATCATAATTTTAATTTATTTAAAGCAAATGATTATCAATCTTCAACAATAGATCGTCTTTTCAGTAAACAAACTATGTCACAATTCATTGTTACTACTGCCACTACTACTACTACTATTAATACTGCTACTACAACCACTTCTGGTACTGAACAATCATTAGTTCCTGTATTACATTCTGAATATAGTTGGAATTTCCAAAGAACGTCATCTTTATCTCTGGGTTAACACCA]




>consensus_9540#5
CAACAGTTAACGAAAAGGCGTAGTCGTGATAGTATTTTTAATCCTTTACGAAAAATATCA
TCTGGACATCATAATTTTAATTTATTTAAAGCAAATGATTATCAATCTTCAACAATAGAT
CGTCTTTTCAGTAAACAAACTATGTCACAATTCATTGTTACTACTGCCACTACTACTACT
ACTATTAATACTGCTACTACAACCACTTCTGGTACTGAACAATCATTAGTTCCTGTATTA
CATTCTGAATATAGTTGGAATTTCCAAAGAACGTCATCTTTATCTCTGGGTTAACACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9540#0      TTATGTTAACTTACCAATGTTCTGGTCTAATCATCATTCTACTACTACTCCTACACCTTC 60
consensus_9540#1      ------------------------------------------------------------
consensus_9540#2      ------------------------------------------------------GCCTCC 6
consensus_9540#5      ------------------------------------------------------------
consensus_9540#4      ------------------------------------------------------------
consensus_9540#3      ------------------------------------------------------------
                                                                                  

consensus_9540#0      GTCAATGTTTTCTAGGTCATCCACATCATGTCAACGACAACATTCTACTGATGTGACGAC 120
consensus_9540#1      ----------------------------------------------------GTGTTGGG 8
consensus_9540#2      GAGGCAGATCGGCACGAGGCGTAATGGTAACCCTCCAATATGTACACAATACCAACTAAT 66
consensus_9540#5      ------------------------------------------------------------
consensus_9540#4      ------------------------------------------------------------
consensus_9540#3      -----------------------CAGTAGTACTTGGTGATGTTATTAATGTTGTTGTTGG 37
                                                                                  

consensus_9540#0      GACGGCAACAACGACAATTG-AGCCTCGATTGTATGCTAATATAATGCCG-TCCAATACT 178
consensus_9540#1      CACTGTGACA-TGNNTGTT--AATCCAGTTCGTGATCCAGTTCTATGATGATCTAAATNT 65
consensus_9540#2      ATTGGTAGCAGTGTAATTGATGATTTAGGCATTGCATCATCATCATTCTCATCAGATACA 126
consensus_9540#5      ------------------------------------------------------------
consensus_9540#4      ------------------------------------------------------------
consensus_9540#3      CACTGTGGACATCGTTGTT--AATCCAGTTCGTGATCCAGTTCTATGATGATCTAAATTT 95
                                                                                  

consensus_9540#0      ATCAGTAAATATCAATCAGTTAGAAATAAACAACAAAGTAAAACTGACTTCAGTTTATTA 238
consensus_9540#1      AATGGATANCCAGTATTAANCGAAGATGAA-GATATGGAGGGGCAGGTGTTGTTAAATTC 124
consensus_9540#2      AGTAGTAATCCACGATCTGTCTCTCCAACCCATCATCATCAA--CAACAACAACA-GTTA 183
consensus_9540#5      --------------------------------------------------CAACA-GTTA 9
consensus_9540#4      --------ATGATGATGGGTTGGAGAGACAGATCGTGGATTA--CTAC--TTGTA-TCTG 47
consensus_9540#3      AATGGATTACCAGTATTAAACGAAGATGAAGATATGGAAGGGGCAGGTGTTGTTAAATTC 155
                                                                                * 

consensus_9540#0      TCCAAAAATCATATTCGTCATAGTGGTAGTGGTATTCCTCCCTCTGAGGCTGACTGTACT 298
consensus_9540#1      GCTGAAA----TAAATGNTGTAGAATTATTGGTGATTC-----------CTG-------T 162
consensus_9540#2      ACGAAAAGGCGTAGTCGTGATAGTATTTTTA--ATCCTTTACGAAAAATATCATC---TG 238
consensus_9540#5      ACGAAAAGGCGTAGTCGTGATAGTATTTTTA--ATCCTTTACGAAAAATATCATC---TG 64
consensus_9540#4      ATGAGGTT-CGTGATCCTAGTCGGAATTATGCCATGGTCGATTTAAGACCTAGTC---CA 103
consensus_9540#3      GCTGAAA----TAAATGTTGTAGAATTATTGGTGATTC-----------CTG-------T 193
                                 *        * *   *  *                    *         

consensus_9540#0      GGTAATAGTAGTAGTAGTAGTAATAGTTCATTAACTGGCG-AGTCACAGCTGCCATCAGG 357
consensus_9540#1      CATAGAATTACTAGTAGTAGTAATAGTTCATTAACTGGCG-AGTCACAGCTGCCATCAGG 221
consensus_9540#2      GACATCATAATTTTAATTTATTTAAAGCAAATGATTATCA-ATCTTCAAC-AATAGATCG 296
consensus_9540#5      GACATCATAATTTTAATTTATTTAAAGCAAATGATTATCA-ATCTTCAAC-AATAGATCG 122
consensus_9540#4      GCAAGTTCCACTATTCCACCTGCAGAATTAACACTGAACA-TAATTCAAC-ATCATAACG 161
consensus_9540#3      CATAGAATTACTCGTAGTAGTAATAGTAGAAGTACTGGTGGAGTTATTATTACTATTGTT 253
                         *     * *        *        *                        *     

consensus_9540#0      TGTTGTAATTGATCA---TAATTCAAAAATTATGGATA-TATCAG-AGAAATCTCACT-C 411
consensus_9540#1      TGTTGTAATTGATCA---TAATTCAAAAATTATGGATA-TATCAG-AGAAATCTCACT-C 275
consensus_9540#2      TCTTTTCAGTAAACAAACTATGTCACAATTCATTGTTACTACTGCCACTACTACTACTAC 356
consensus_9540#5      TCTTTTCAGTAAACAAACTATGTCACAATTCATTGTTACTACTGCCACTACTACTACTAC 182
consensus_9540#4      A----TAATCGTACTGGTCAATTTACAACATGT-ATCAGTAGTAGTACTACTACTACTAC 216
consensus_9540#3      TG--ATAATAAT------TGATTTGCACTTTGTGCAGG-CATTGTCATTGTATATGCT-T 303
                           * *              *   *     *       *     *         **  

consensus_9540#0      TCTGGACCCTACTTTAGTAATAAATTTGATCCCTACTACAACAGCAACAATTCCTCAATA 471
consensus_9540#1      TCTGGACCCTACTTCAGTAATTAATTTGATCCCTACTACAACAGCAACAATTCCTCAATA 335
consensus_9540#2      TATTAATACTGCTACTACAACCACTTCTGG---TACTGAACAATCATTAGTTCCT--GTA 411
consensus_9540#5      TATTAATACTGCTACTACAACCACTTCTGG---TACTGAACAATCATTAGTTCCT--GTA 237
consensus_9540#4      TATTAATACTGCTACTACAACCACTTCTGG---TACTGAACAATCATTAGTTCCT--GTA 271
consensus_9540#3      TATCAACA-TGGTCTAGTCGCCAGTTACA-----AATAAATTTACATCCAGTTGACGGT- 356
                      * *  *   *  *         * **        * *  *    **     *      * 

consensus_9540#0      TTGTCCAGTACCAGTAGTGGCGAGAGCACAAGAAGCAG-CAAATTTACCCACT--AACTC 528
consensus_9540#1      TTGTCCAGTAGCAGTAGTGGCGAGAGCACAAGAAGCAG-CAAATTTACCCACT--AACTC 392
consensus_9540#2      TTACATTCTAAATATAGTTG-GAATTTCCAAAGAACGT-CATCTTTATCTCCTCCAGATA 469
consensus_9540#5      TTACATTCTGAATATAGTTG-GAATTTCCAAAGAACGT-CATCTTTATCTCTG--GGTTA 293
consensus_9540#4      TTACATTCTAAATATAGTTG-GAATTTCCAAAGAACGT-CATCTTTATCTCCTCCAGATA 329
consensus_9540#3      TCACCTATTAAACACAGCCGCCAGTGTTGTACATGCAAACTGCCTTGAAGACCTTGAAAT 416
                      *       *      **  *  *       *    *   *    **              

consensus_9540#0      TGATTATTCAAACCTACCTGATG-AGGTTCGTGATCCTAGT-CGGAATTATGCCATGGT- 585
consensus_9540#1      TGATTATTCAAACCTACCTGATG-AGGTTCGTGATCCTAGT-CGGAATTATGCCATGGT- 449
consensus_9540#2      TGATTGTTAATGATTCCATATTGGATAGTTATAATCCTAATTCATTGTCAAGATTTGAT- 528
consensus_9540#5      ACACCA------------------------------------------------------ 299
consensus_9540#4      TGATTGTTAATGATTCCATATTGGATAGTTATAATCCTAATTCATTGTCAAGATTTGAT- 388
consensus_9540#3      AGCTTACTGCCATCACCACTATGACGTAATGTGACTCGAAATCGATTGTCAACAACGATA 476
                                                                                  

consensus_9540#0      CGATT---TAAGACCTAGTCCAGCAAGTTCCACTATTC-CACCTGC-GAACCTAT----- 635
consensus_9540#1      CGATT---TAAGACCTAGTCCAGCAAGTTCCACTATTC-CACCTGC-AGAATTAACACTG 504
consensus_9540#2      CATTTACATGAAAATAGTTTTAAAGAACAATTTAATCT-TAGTGGC-GGTGGTGGTGTCA 586
consensus_9540#5      ------------------------------------------------------------
consensus_9540#4      CATTTACATGAAAATAGTTTTAAAGAACAATTTAATCT-TAGTGGC-GGTGGTGGTGTCA 446
consensus_9540#3      CGAGC--TAAATTATCAGCCCAACAGAACATTTCATCCATACCGGCTAGAGCTAATGCAT 534
                                                                                  

consensus_9540#0      GTCATAGGTTCGCAGGAGTTTGA--ATTGATGCAGACAAATTGCTGCTGG---------- 683
consensus_9540#1      AACATAATTCAACATCATAACGATAATCGTACTGGTCAATTTACAACATGTAACAGTAGT 564
consensus_9540#2      GTGTTGTTGCTACAACAATTGGAGTAACAACTAATAATAATATTCAAGAAGGTAACAATA 646
consensus_9540#5      ------------------------------------------------------------
consensus_9540#4      GTGTTGTTGCTACAACAATTGGAGTAACAACTAATAA----------------------- 483
consensus_9540#3      ACACAGATGATCCACCAATTAAG--ACTATAATATTTGATTCTTTATCCATATGATAACC 592
                                                                                  

consensus_9540#0      ------------------------------------------------------------
consensus_9540#1      AGTACTACTACTACAACTTGTGTTACAAGTATCCGAAACTCTTCTAATCATGAAATATTT 624
consensus_9540#2      GT---------------------------------------------------------- 648
consensus_9540#5      ------------------------------------------------------------
consensus_9540#4      ------------------------------------------------------------
consensus_9540#3      ACTTTCAAAACCTGTGAN------------------------------------------ 610
                                                                                  

consensus_9540#0      ------------------------------------------------------
consensus_9540#1      ACAGCAGATGAAGACTACTGGGATTTACGTGATAATAGTAATTGTCAACATAAA 678
consensus_9540#2      ------------------------------------------------------
consensus_9540#5      ------------------------------------------------------
consensus_9540#4      ------------------------------------------------------
consensus_9540#3      ------------------------------------------------------