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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1530 fasta sequence
[GAATCTTTAACACCTGAAACTAACGAACCATCTTCAGATAATCGAAATAAAAATTATGTTTTTGATATTCCCCCACCACCAATACCACCTACAGAAATGTATTCACCATATGCAAAAGCTACAGCTGGTGGTGGTAATGAAAGCGTCTTAGCTTTGGAACGTAGACAAGCTGAACTTGAAGCTCGTGCAGCCGAATTAGATCGTCGAGAAAAAGAACAACAAGCTCGTGCGAATACAATTCATTCAGGTCCAAGTCCACATAATTGGCCACCATTCCCTCCATTCTGTCCATGCAAACCATGTGTTCGACAAGATTTTGAAAATGATATTCCATTCGATTGTCGATGGATGGCTAAAATGGGTTATGGTATTTGGTTGGGCTATGCTATCTTGTTAGTATTCAATATGTTTGGAGCACTAGGCTACTTTATTGTTGGTACCGGTGCAGCTGAAGGACCATTGTTTGGTGCATCAATTTTACTAGTGCTTGTTATGCCACCTGCCAGCTTTTTCGGATGGCATCGACCTTTGTATAAAGCATTAAGATCAGATAGCTCAGCAAATTATTTAATATTTTTCCTTTTCTTTTCTGGACAAACTATTATTATTTTAATACAATGCCTTGGAATTGATTATCTTGGATCATGTGGTTGGATTAATGGGATAAAAACTGTAAATCATAATGATGGTGTTGGTGTTCTAATGTTATTGATTGCTACAATATTCAGTATTCTTGCAGGATTTTGTAGTTTCCTGTTATTTAAGGTTCATAAATATTATCGATCATCTGGAGCAAGCTTACATAAAGCTAAACTAGAAATGGCTAATGCAGGAGTATTTGAACGTTCTGGAGGATTTGGTGCAATGCCATAATTGAAGAAAG-AAAAAAACAAACAAACAAACAAGCAATTCATATATAATAATCAGTTAACTTATAACACAATTTAATCAATATTGATACAGTTTTGTTTGTTTGTTTGTTTTTCTTCGACAGGAAACTGGACATTATTCTATCCCTTACATATCAATTTCATAAAACCACCAGTGATATCTTATTTTTGTTTTTGCTCTTCTATACACACAATGTTTGTTGTTGTGGTTGTTGTTGTTTTCTCCCCCCCCCC---CACACACACACTTTTTTATTGATTGTTAAGTTTTACATGTAAAGAATAAATAAACA-AAGC-A-ACTAATGACT----GATTCTTTTTTTAAAAAATTATTATTCATTTATTTNCAATGATCAATGTTCACATATNCAA-AACACACACACACCCACACACATGCACAATTTGAATGACAACATGATGAGTACTTTTTCTGTTTATATTGGAAAAAGAATCCATCATCTTTCTTTTCTTTTGTTTACCATGGGGGGGATGGGTAATTTCTTCACATACCCAAGATGGTGGGGGCTGAATATTAAACACATGACCCTGGTACCTAACTGGAATACAAAACGGGCAAAAAACCCCATTTTTTGTTTAAAATGGCGATAAAGCAAAGGTTAGGGGGGGGGTGTGACCAACAAGGAGA]
[+] EMBL CD096114 [GAATCTTTAACACCTGAAACTAACGAACCATCTTCAGATAATCGAAATAAAAATTATGTTTTTGATATTCCCCCACCACCAATACCACCTACAGAAATGTATTCACCATATGCAAAAGCTACAGCTGGTGGTGGTAATGAAAGCGTCTTAGCTTTGGAACGTAGACAAGCTGAACTTGAAGCTCGTGCAGCCGAATTAGATCGTCGAGAAAAAGAACAACAAGCTCGTGCGAATACAATTCATTCAGGTCCAAGTCCACATAATTGGCCACCATTCCCTCCATTCTGTCCATGCAAACCATGTGTTCGACAAGATTTTGAAAATGATATTCCATTCGATTGTCGATGGATGGCTAAAATGGGTTATGGTATTTGGTTGGGCTATGCTATCTTGTTAGTATTCAATATGTTTGGAGCACTAGGCTACTTTATTGTTGG ]
[+] EMBL CD166479 [ taccGTAATGAAAGCGT TTAGC TTGGAACGTAGAC AG GAAC TGAAGCTCGTGCAGCCGAATTAGATCGTCGAGAAAAAGAACAACAAGCTCGTGCGAATACAATTCATTCAGGTCCAAGTCCACATAATTGGCCACCATTCCCTCCATTCTGTCCATGCAAACCATGTGTTCGACAAGATTTTGAAAATGACATTCCATTCGATTGTCGATGGATGGCTAAAATGGGTTATGGT ]
[-] EMBL CD185065 [ TGAAAACGTCTTAGCTTTGGAACGTAGACAAGCTGAACTTGAAGCTCGTGCAGCCGAATTAGATCGTCGAGAAAAAGAACAACAAGCTCGTGCGAATACAATTCATTCAGGTCCAAGTCCACATAATTGGCCACCATTCCCTCCATTCTGTCCATGCAAACCATGTGTTCGACAAGATTTTGAAAATGATATTCCATTCGATTGTCGATGGATGGCTAAAATGGGTTATGGTATTTGGTTGGGCTATGCTATCTTGTTAGTATTCAATATGTTTGGAGCACTAGGCTACTTTATTGTTGGTACCGGTGCAGCTGAAGGACCATTGTTTGATGCATCAATTTTACTAGTGCTTGTTATGCCACCTGCCAGCTTTTTCGGATGGCATCGACCTTTGTATAAAGCATTAAGAT ]
[-] EMBL CD195955 [ TGTCCATGCAAACCATGTGTTCGACAAGATTTTGAAAATGATATTCCATTCGATTGTCGATGGATGGCTAAAATGGGTTATGGTATTTGGTTGGGCTATGCTATCTTGTTAGTATTCAATATGTTTGGAGCACTAGGCTACTTTATTGTTGGTACCGGTGCAGCTGAAGGACCATTGTTTGGTGCATCAATTTTACTAGTGCTTGTTATGCCACCTGCCAGCTTTTTCGGATGGCATCGACCTTTGTATAAAGCATTAAGATCAGATAGCTCAGCAAATTATTTAATATTTTTCCTTTTCTTTTCTGGACAAACTATTATTATTTTAA ]
[-] EMBL CD096173 [ AAATGATATGCCATTCGATTGTCGATGGATGGCTAAAATGGGTTATGGTATTTGGTTGGGCTATGCTATNNNNTCAGTATTCAATATGTTTGGAGCGCTAGGCTACTTTATTGTTGGT ]
[-] EMBL CD171166 [ CTACTTTATTGTTGGTACCGGTGCAGCTGAAGGACCATTGTTTGGTGCATCAATTTTACTAGTGCTTGTTATGCCACCTGCCAGCTTTTTCGGATGGCATCGACCTTTGTATAAAGCATTAAGATCAGATAGCTCAGCAAATTATTTAATATTTTTCCTTTTCTTTTCTGGACAAACTATTATTATTTTAATACAATGCCTTGGAATTGATTATCTTGGATCATGTGGTTGGATTAATGGGATAAAAACTGTAAATCATAATGATGGTGTTGGTGTTCTAATGTTATTGATTGCTACAATATTCAGTATTCTTGCAGGATTTTGTAGTTTCCTGTTATTTAAGGTTCATAAATATTATCGATCATCTGGAGCAAGCTTACATAAAGCTAAACTAGAAATGGCTAATGCAGGAGTAT ]
[+] EMBL CD079921 [ GTTATTTAAGGTTCATAAATATTATCGATCATCTGGAGCAAGCTTACATAAAGCTAAACTAGAAATGGCTAATGCAGGAGTATTTGAACGTTCTGGAGGATTTGGTGCAATGCCATAATTGAAGAAAGAAAAAAAACAAACAAACAAACAAGCAATTCATATATAATAATCAGTTAACTTATAACACAATTTAATCAATATTGATACAGTTTTGTTTGTTTGTTTGTTTTTCTTCGACAGGAAACTGGACATTATTCTATCCCTTACATATCAATTTCATAAAACCACCAGTGATATCTTATTTTTGTTTTTGCTCTTCTATACACACAATGTTTGTTGTTGTGGGTGTTGTTGTTTTCTCCCCCCCCCC CACACACACACTTTTTTATTGATTGTTAAGTTTTACATGTAAAGAATAAATAAACANNAGC A ACTAATGACT GATTCTTTTTTTAAAAAATTATTATTCATTTATTTNCAATGATCAATGTTCACATATNCAA AACACACACACACCCACACACATGCACAATTTGAATGACAACATGATGAGTACTTTTTCTGTTTATATTGGAAAAAGAATCCATCATCTTTCTTTTCTTTTGTTTACCATGGGGGGGATGGGTAATTTCTTCACATACCCAAGATGGTGGGGGCTGAATATTAAACACATGACCCTGGTACCTAACTGGAATACAAAACGGGCAAAAAACCCCATTTTTTGTTTAAAATGGCGATAAAGCAAAGGTTAGGGGGGGGGTGTGACCAACAAGGAGA]
[+] EMBL AI976940 [ TCATCTGGAGCAAGCTTACATAAAGCTAAACTAGAAATGGCTAATGCAGGAGTATTTGAACGTTCTGGAGGATTTGGTGCAATGCCATAATTGAAGAAAG AAAAAAACAAACAAACAAACAAGCAATTCATATATAATAATCAGTTAACTTATAACACAATTTAATCAATATTGATACAGTTTTGTTTGTTTGTTTGTTTTTCTTCGACAGGAAACTGGACATTATTCTATCCCTTACATATCAATTTCATAAAACCACCAGTGATATCTTATTTTTGTTTTTGCTCTTCTATACACACAATGTTTGTTGTTGTGGTTGTTGTTGTTATCTCCCCCCCCCCACACACACACACACTTTTTTATTGATTGTTAAGTTTTACATGTAAAGAATAAATAAACA AAGC AGACTAATGACTGAGAGATTCTTTTTTTAAAAAATTATTATTCATTTATTTCCAATGATCAATGTTCACATATCCAACAACA ACACACACCCACACACATGCAC ATTTGAATGACAACATGATGAGTAC TTTTCTG ]
[+] EMBL CD197536 [ GCTTACATTAAGCTAAACTAGAAATGGCTAATGCAGGAGTATTTGAACGTTCTGGAGGATTTGGTGCAATGCCATAATTGAAGAAAG AAAAAAACAAACAAACAAACAAGCAATTCATATATAATAATCAGTTAACTTATAACACAATTTAATCAATATTGATACAGTTTTGTTTGTTTGTTTGTTTTTCTTCGACAGGAAACTGGACATTATTCTATCCCTTACATATCAATTTCATAAAACCACCAGTGATATCTTATTTTTGTTTTTGCTCTTCTATACACACAATGTTTGTTGTTGTGGTTGTTGTTGTTTTCTCCCCCCCCCC CACACACACACTTTTTTATTGATTGTTAAGTTTTACATGTAAAGAATAAATAAACA AAGCAA ACTAATGACT GATTCTTTTTTTAAAAAATTA ]
consensusID : consensus_9541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[CCAAACAAACATTTTTTATTGATTGTTAAGTTTTCCATGAAAGAATAAATAACCCAAGCCCAACTAATGGCTGATCTTTTTTTAAAATATTATTATTCATTTATTTCCAATGATCAATGTTCACATATCCAACAACAACACACACCCCCACACATGCACATTTGAATGACAACATGATGAGTACTTTTCTGTTTTATATTGAAAAAAGAGNCGATCATCTTTTCTTTTCTTTTGTTTTACCATGGGGGTGTATGGTTAGTTTTCTTCTACATACTCATAGTTGTTGTTGTCTTGATTATTATCATCATTGACTTTGTTTACCTTCCCTGTTATTACTACTACTGTTTTATACATACCCCATTTCTCTGTTTTAATCTGTTCGTTATATGCGAATGTTTTTAGGTAGTGTGTTTGTTGACTAAACTAAATGGATTGTATGGTATTTTTATACGAGAGAAAGAAAAACTTGTTTCATCATGTGTTTTTTTTGTTTCTCTTTTCAATCTTCTTTCTTTTTTTTTCTTTTTTAAATCATTATCGTCATGTATTGTAACTTGATAGAATTAAAAGTAAATGAAA]
[-] EMBL CD074117 [CCAAACAAACATTTTTTATTGATTGTTAAGTTTTCCATGAAAGAATAAATAACCCAAGCCCAACTAATGGCTGATCTTTTTTTAAAATATTATTATTCATTTATTTCCAATGATCAATGTTCACATATCCAACAACAACACACACCCCCACACATGCACATTTGAATGACAACATGATGAGTACTTTTCTGTTTTATATTGAAAAAAGAGNCGATCATCTTTTCTTTTCTTTTGTTTTACCATGGGGGTGTATGGTTAGTTTTCTTCTACATACTCATAGTTGTTGTTGTCTTGATTATTATCATCATTGACTTTGTTTACCTTCCCTGTTATTACTACTACTGTTTTATACATACCCCATTTCTCTGTTTTAATCTGTTCGTTATATGCGAATGTTTTTAGGTAGTGTGTTTGTTGACTAAACTAAATGGATTGTATGGTATTTTTATACGAGAGAAAGAAAAACTTGTTTCATCATGTGTTTTTTTTGTTTCTCTTTTCAATCTTCTTTCTTTTTTTTTCTTTTTTAAATCATTATCGTCATGTATTGTAACTTGATAGAATTAAAAGTAAATGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9541#0 GAATCTTTAACACCTGAAACTAACGAACCATCTTCAGATAATCGAAATAAAAATTATGTT 60
consensus_9541#1 ------------------------------------------------------------
consensus_9541#0 TTTGATATTCCCCCACCACCAATACCACCTACAGAAATGTATTCACCATATGCAAAAGCT 120
consensus_9541#1 ------------------------------------------------------------
consensus_9541#0 ACAGCTGGTGGTGGTAATGAAAGCGTCTTAGCTTTGGAACGTAGACAAGCTGAACTTGAA 180
consensus_9541#1 ------------------------------------------------------------
consensus_9541#0 GCTCGTGCAGCCGAATTAGATCGTCGAGAAAAAGAACAACAAGCTCGTGCGAATACAATT 240
consensus_9541#1 ------------------------------------------------------------
consensus_9541#0 CATTCAGGTCCAAGTCCACATAATTGGCCACCATTCCCTCCATTCTGTCCATGCAAACCA 300
consensus_9541#1 ------------------------------------------------------------
consensus_9541#0 TGTGTTCGACAAGATTTTGAAAATGATATTCCATTCGATTGTCGATGGATGGCTAAAATG 360
consensus_9541#1 ------------------------------------------------------------
consensus_9541#0 GGTTATGGTATTTGGTTGGGCTATGCTATCTTGTTAGTATTCAATATGTTTGGAGCACTA 420
consensus_9541#1 ------------------------------------------------------------
consensus_9541#0 GGCTACTTTATTGTTGGTACCGGTGCAGCTGAAGGACCATTGTTTGGTGCATCAATTTTA 480
consensus_9541#1 ------------------------------------------------------------
consensus_9541#0 CTAGTGCTTGTTATGCCACCTGCCAGCTTTTTCGGATGGCATCGACCTTTGTATAAAGCA 540
consensus_9541#1 ------------------------------------------------------------
consensus_9541#0 TTAAGATCAGATAGCTCAGCAAATTATTTAATATTTTTCCTTTTCTTTTCTGGACAAACT 600
consensus_9541#1 ------------------------------------------------------------
consensus_9541#0 ATTATTATTTTAATACAATGCCTTGGAATTGATTATCTTGGATCATGTGGTTGGATTAAT 660
consensus_9541#1 ------------------------------------------------------------
consensus_9541#0 GGGATAAAAACTGTAAATCATAATGATGGTGTTGGTGTTCTAATGTTATTGATTGCTACA 720
consensus_9541#1 ------------------------------------------------------------
consensus_9541#0 ATATTCAGTATTCTTGCAGGATTTTGTAGTTTCCTGTTATTTAAGGTTCATAAATATTAT 780
consensus_9541#1 ---------------------------------------------CCAAACAAACATTTT 15
* *** *** *
consensus_9541#0 CGATCATCTGGAGCAAGCTTACATAAAGCTAAACTAGAAATGGCTAATGCAGGAGTATTT 840
consensus_9541#1 TTATTGATTGTTA-AGTTTTCCATGAAA---------GAATAAATAACCCAAGCCCAACT 65
** ** * ** *** ** *** *** ** * * *
consensus_9541#0 GAACGTTCTGGAGGATTTGGTGCAATGCCATAATTGAAGAAAGAAAAAAACAAACAAACA 900
consensus_9541#1 AATGGCT---GATCTTTTTTTAAAATATTATTATTCATTTATTT----------CCAATG 112
* * * ** *** * *** ** *** * * * **
consensus_9541#0 AACAAGCAATTCATATATAATAATCAGTTAACTTATAACACAATTTAATCAATATTGATA 960
consensus_9541#1 ATCAATGTTCACATATCCAACAACAACACACACCCCCACACATGCACATTTG-AATGACA 171
* *** ***** ** ** * * ***** ** * *** *
consensus_9541#0 CAGTTTTGTTTGTTTGTTTGTTTTTCTTCGACAGGAAACTGGACATTATTCTATCCCTTA 1020
consensus_9541#1 ACATGATGAGTACTTTTCTGTTTTATATTGAAAAAAGAGNCGA--TCATCTTTTCTTTT- 228
* ** * ** * ****** * ** * * * ** * ** * ** **
consensus_9541#0 CATATCAATTTCATAAAACCACCAGTGATATCTTATTTTTGTTTTTGCTCTTCTATACAC 1080
consensus_9541#1 -------CTTTTGTTTTACCA----TGGGGGTGTATGGTTAGTTTT---CTTCTACATAC 274
*** * **** ** *** ** **** ****** * **
consensus_9541#0 ACAATGTTTGTTGTTGTGGTTGTTGTTGTTTTCTCCCCCCCCCCCACACACACACTTTTT 1140
consensus_9541#1 TCA----TAGTTGTTGTTGTCTTGATTATTATCATCATTGACTTTGTTTACCTTCCCTGT 330
** * ******** ** * ** ** ** * * ** * * *
consensus_9541#0 TATTGATTGTTAAGTTTTACATGTAAAGAATAAATAAACAAAGCAACTAATGACTGATTC 1200
consensus_9541#1 TATTACTACTACTGTTTTATACATACCCCATTTCTCTGTT------TTAAT--CTGTTCG 382
**** * * ****** * ** ** * **** *** *
consensus_9541#0 TTTTTTTAAAAAATTATTATTCATTTATTTNCAATGATCAATGTTCACATATNCAAAACA 1260
consensus_9541#1 TTATATGCGAATGTTTTTAGGTAGT-GTGTTTGTTGACTAAACTAAATGGATT-GTATGG 440
** * * ** ** *** * * * * *** ** * * ** *
consensus_9541#0 CACACACACCCACACACATGCACAATTTGAATGACAACATGATGAGTACTTTTTCTGTTT 1320
consensus_9541#1 TATTTTTATACGAGAGAAAGAAAAACTTGTTT-----CATCAT--GTGTTTTTTTTGTTT 493
* * * * * * ** *** * *** ** ** ***** *****
consensus_9541#0 ATATTGGAAAAAGAATCCATCATCTTTCTTTTCTTTTGTTTACCATGGGGGGGATGGGTA 1380
consensus_9541#1 CTCTTT---------TCAATCTTCTTTCTTTTTTTTTCTTTTTTA----------AATCA 534
* ** ** *** ********** **** *** * *
consensus_9541#0 ATTTCTTCACATACCCAAGATGGTGGGGGCTGAATATTAAACACATGACCCTGGTACCTA 1440
consensus_9541#1 TTATCGTCATGTATTGTAACTTGATAGAATTAAAAGTAAATGAAA--------------- 579
* ** *** ** * * * * * ** * ** * *
consensus_9541#0 ACTGGAATACAAAACGGGCAAAAAACCCCATTTTTTGTTTAAAATGGCGATAAAGCAAAG 1500
consensus_9541#1 ------------------------------------------------------------
consensus_9541#0 GTTAGGGGGGGGGTGTGACCAACAAGGAGA 1530
consensus_9541#1 ------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||