These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1686 fasta sequence [ACGCTCGAGTTGGTAATATTGAAGATATCACGTCAATCGGTTCAACCACCAGCTTTCTACAGGCTACAGCAGCTGAGGTTAGATCAACACGAGTAAACTGGCAATCTTACCTTCAAGGACAAATAATTAATGATGAACAGTACTCATTCATAACACGACTGGATAATGCTCCTACTGCGGAAGCACGAAATCATGTAATTAGGGCTGATGAAAACATGACCGCTAGGGTTTTTATATTCATCCTAAATAAAATCTCGAAAGAACAAACATTACGATATATCCTTACACTTATTGATGATATGCTTCAGGAAGACAAATTGCGTGTTGAAATCTTTCGTGATTACTTCTCCAAGTCAAAAGAATCACTTTGGTCTCATTTTTTCGGATTTTTTCAAAGAGGGGATCCTTTCTGTATGTACCAAGCTTCTCGGATAATAGCAAAGTTCGCATGTTGGTCTTCTCAACTTATGGAGGAAAATGACTTAATTTATTATTTAAATTGGCTACGTGAACAACTGACAATAACCAATAATCAGTATGACCAAACTGTGGCTCGAAATCTTCAAATGATGCTTCGCATCAGAGAGTACCGTACTCAATTCGCTAAGGTCGGAGGAATCGAGACCATTGGAGATGTTTTGCAAGAAAAATTAA-CTAGTCGTCAATTACAATATCAATTAATTTTTTGTTTATGGTGTATGAGTTTTGATTCAATTCATGTAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAGCAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAATTGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATGAATATATGGCTGAATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAGTTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTAGTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATTGGAGAGTTTGTAAGACATTATCCACGTGGTAAACAAATAATTGAAACACTTGGC-GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGC-AAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAATAATAATAATAATAATAGTAGTAGTAGTATCAGTAGTAATGAGAAAAACTCCAAAAATTTTCGGTCAGTCATTCATTACTATTGTTACCCCAGTATTCATTCTTCTGGGTTAGTGTTACTGTTATCGTTAGTAAAAAATTTTGTTGGTGTTGTTGTTGCTATAGTTAATCCTTCATGATGATTCTCTCGTTCTTGAAATCAATATAGATAAACATGCATAATGATAATAATCGATTTTTGTTTTGTTTGTTTTGTTTTCGTTGAT] [+] EMBL AI976420 [ACGCTCGAGTTGGTAATATTGAAGATATCACGTCAATCGGTTCAACCACCAGCTTTCTACAGGCTACAGCAGCTGAGGTTAGATCAACACGAGTAAACTGGCAATCTTACCTTCAAGGACAAATAATTAATGATGAACAGTACTCATTCATAACACGACTGGATAATGCTCCTACTGCGGAAGCACGAAATCATGTAATTAGGGCTGATGAAAACATGACCGCTAGGGTTTTTATATTCATCCTAAATAAAATCTCGAAAGAACAAACATTACGATATATCCTTACACTTATTGATGATATGCTTCAGGAAGACAAATTGCGTGTTGAAATCTTTCGTGATTACTTCTCCAAGTCAAAAGAATCACTTTGGTCTCATTTTTTCGGATTTTTTCAAAGAGGGGATCCTTTCTGTATGTACCAAGCTTCTCGGATAATAGCAAAGTTCGCATGTTGGTCTTCTCAACTTATGGAGGAAAATGACTTAATTTATTATTTAAATTGGCTACGTGAAC ] [+] EMBL AI977126 [ AGCAAAGTTCGCATGTTGGTCTTCTCAACTTATGGAGGAAAATGACTTAATTTATTATTTAAATTGGCTACGTGAACAACTGACAATAACCAATAATCAGTATGACCAAACTGTGGCTCGAAATCTTCAAATGATGCTTCGCATCAGAGAGTACCGTACTCAATTCGCTAAGGTCGGAGGAATCGAGACCATTGGAGATGTTTTGCAAGAAAAATTAA CTAGTCGTCAATTACAATATCAATTAATTTTTTGTTTATGGTGTATGAGTTTTGATTCAATTCATGTAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAGCAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAATTGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAAAAGAA TAGAA ] [+] EMBL CD082938 [ AGATGTTTTGCAAGAAAAATTAACCTAGTCGTCAATTACAATATCAATTAATTTTTTGTTTATGGTGTATGAGTTTTGATTCAATTCATGTAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAGCAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAATTGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATGAATATATGGCTGAATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAGTTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTAGTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATTGGAGAGTTTGTAAGACATTATCCACGTGGTAAACANATAATTGAAACACTTGGCGGGTAA ] [+] EMBL CD169014 [ TTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATGAATATATGGCTGAATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAGTTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTAGTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATTGGAGAGTTTGTAAGACATTATCCACGTGGTAAACAAATAATTGAAACACTTGGC GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGC AAAAAATAATGGTACATGATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGA AATAATAATAATAATAATAGTAGTAGTAGTATCAGTAGTAATGAGAAAAACTCCAAAATTTT ] [+] EMBL CD169119 [ TTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATGAATATATGGCTGAATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAGTTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTAGTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATTGGAGAGTTTGTAAGACATTATCCACGTGGTAAACAAATAATTGAAACACTTGGC GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGCAAAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAAT ] [+] EMBL CD169552 [ TTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATGAATATATGGCTGAATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAGTTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTAGTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATTGGAGAGTTTGTAAGACATTATCCACGTGGTAAACAAATAATTGAAACACTTGGC GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGC AAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAATAATAATAATAATAATAGTAGTAGTAGTATCAGTAGTAATGAGAAAAACTCCAAAAATTTTt ] [+] EMBL CD169007 [ tcACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATTTTTATATGGCTGAATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAGTTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTAGTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATTGGAGAGTTTGTAAGACATTATCCACGTGGTAAACAAATAATTGAAACACTTGGC GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGC AAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAATAATAATAATAATAATAGTAGTAGTAGTATC ] [-] EMBL CD077008 [ CACTTGGC GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGC AAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAATAATAATAATAATAATAGTAGTAGTAGTATCAGTAGTAATGAGAAAAACTCCAAAAATTTTCGGTCAGTCATTCATTACTATTGTTACCCCAGTATTCATTCTTCTGGGTTAGTGTTACTGTTATCGTTAGTAAAAAATTTTGTTGGTGTTGTTGTTGCTATAGTTAATCCTTCATGATGATTCTCTCGTTCTTGAAATCAATATAGATAAACATGCATAATGATAATAATCGATTTTTGTTTTGTTTGTTTTGTTTTCGTTGAT] [-] EMBL CD076523 [ TTGGC GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGC AAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAATAATAATAATAATAATAGTAGTAGTAGTATCAGTAGTAATGAGAAAAACTCCAAAAATTTTCGGTCAGTCATTCATTACTATTGTTACCCCAGTATTCATTCTTCTGGGTTAGTGTTACTGTTATCGTTAGTAAAAAATTTTGTTGGTGTTGTTGTTGCTATAGTTAATCCTTCATGATGATTCTCTCGTTCTTGAAATCAATATAGATAAACATGCATAATGATAATAATCGATTTTTGTTTTGTTTGTTTTGTTTTCGTTGAT] consensusID : consensus_9544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [AAATCTTTTTGATTCAATTCATGTAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAGCAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAATTGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGTAAGTTAATTCTTTCTGTTACTGTGAAGTCTCATGCTATCTTTGTTGTGATGGGCGATATCCGAAATTTGATATTGATACACAATGTGCTATGCGCTAACTTCCCCCCCCCCCTAGACGACTACTTGGGCGAGAAAGTGTATTAGACTACCGAATAAAATGTACAAATACTCAT] [+] EMBL CD067257 [AAATCTTTTTGATTCAATTCATGTAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAGCAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAATTGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGTAAGTTAATTCTTTCTGTTACTGTGAAGTCTCATGCTATCTTTGTTGTGATGGGCGATATCCGAAATTTGATATTGATACACAATGTGCTATGCGCTAACTTCCCCCCCCCCCTAGACGACTACTTGGGCGAGAAAGTGTATTAGACTACCGAATAAAATGTACAAATACTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9544#0 ACGCTCGAGTTGGTAATATTGAAGATATCACGTCAATCGGTTCAACCACCAGCTTTCTAC 60 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 AGGCTACAGCAGCTGAGGTTAGATCAACACGAGTAAACTGGCAATCTTACCTTCAAGGAC 120 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 AAATAATTAATGATGAACAGTACTCATTCATAACACGACTGGATAATGCTCCTACTGCGG 180 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 AAGCACGAAATCATGTAATTAGGGCTGATGAAAACATGACCGCTAGGGTTTTTATATTCA 240 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 TCCTAAATAAAATCTCGAAAGAACAAACATTACGATATATCCTTACACTTATTGATGATA 300 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 TGCTTCAGGAAGACAAATTGCGTGTTGAAATCTTTCGTGATTACTTCTCCAAGTCAAAAG 360 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 AATCACTTTGGTCTCATTTTTTCGGATTTTTTCAAAGAGGGGATCCTTTCTGTATGTACC 420 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 AAGCTTCTCGGATAATAGCAAAGTTCGCATGTTGGTCTTCTCAACTTATGGAGGAAAATG 480 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 ACTTAATTTATTATTTAAATTGGCTACGTGAACAACTGACAATAACCAATAATCAGTATG 540 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 ACCAAACTGTGGCTCGAAATCTTCAAATGATGCTTCGCATCAGAGAGTACCGTACTCAAT 600 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 TCGCTAAGGTCGGAGGAATCGAGACCATTGGAGATGTTTTGCAAGAAAAATTAACTAGTC 660 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 GTCAATTACAATATCAATTAATTTTTTGTTTATGGTGTATGAGTTTTGATTCAATTCATG 720 consensus_9544#1 -------------------------------------AAATCTTTTTGATTCAATTCATG 23 * ***************** consensus_9544#0 TAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAG 780 consensus_9544#1 TAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAG 83 ************************************************************ consensus_9544#0 CAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAAT 840 consensus_9544#1 CAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAAT 143 ************************************************************ consensus_9544#0 TGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAA 900 consensus_9544#1 TGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAA 203 ************************************************************ consensus_9544#0 AAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATA 960 consensus_9544#1 AAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATA 263 ************************************************************ consensus_9544#0 TTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATGAAT 1020 consensus_9544#1 TTTCATTCTTAAATGT-AAGTTAATTCTTTCTGTT---ACTGTGAAGTCTCATGCTATCT 319 *************** ** *** * * ** *** * ** ** * * consensus_9544#0 ATATGGCTG-AATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAG 1079 consensus_9544#1 TTGTTGTGATGGGCGATATCCGAAATTTGATATTGATACACAATGTGCTATGCGCTAACT 379 * * * * *** * * * * ** * * * * * ** consensus_9544#0 TTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTA 1139 consensus_9544#1 TCCCCCCCCCCCTAGACGACTACTTGGGCGAGAAAGTGTATTAGACTACCGAATAAAAT- 438 * * * * * * ** * * * * ** * * consensus_9544#0 GTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATT 1199 consensus_9544#1 GTACAAATACTCAT---------------------------------------------- 452 **** * ** ** consensus_9544#0 GGAGAGTTTGTAAGACATTATCCACGTGGTAAACAAATAATTGAAACACTTGGCGGTAAA 1259 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 CAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTT 1319 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 TCATTGCAAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTT 1379 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 CAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAATAATAATAATAATAATAG 1439 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 TAGTAGTAGTATCAGTAGTAATGAGAAAAACTCCAAAAATTTTCGGTCAGTCATTCATTA 1499 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 CTATTGTTACCCCAGTATTCATTCTTCTGGGTTAGTGTTACTGTTATCGTTAGTAAAAAA 1559 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 TTTTGTTGGTGTTGTTGTTGCTATAGTTAATCCTTCATGATGATTCTCTCGTTCTTGAAA 1619 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 TCAATATAGATAAACATGCATAATGATAATAATCGATTTTTGTTTTGTTTGTTTTGTTTT 1679 consensus_9544#1 ------------------------------------------------------------ consensus_9544#0 CGTTGAT 1686 consensus_9544#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||