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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1686 fasta sequence
[ACGCTCGAGTTGGTAATATTGAAGATATCACGTCAATCGGTTCAACCACCAGCTTTCTACAGGCTACAGCAGCTGAGGTTAGATCAACACGAGTAAACTGGCAATCTTACCTTCAAGGACAAATAATTAATGATGAACAGTACTCATTCATAACACGACTGGATAATGCTCCTACTGCGGAAGCACGAAATCATGTAATTAGGGCTGATGAAAACATGACCGCTAGGGTTTTTATATTCATCCTAAATAAAATCTCGAAAGAACAAACATTACGATATATCCTTACACTTATTGATGATATGCTTCAGGAAGACAAATTGCGTGTTGAAATCTTTCGTGATTACTTCTCCAAGTCAAAAGAATCACTTTGGTCTCATTTTTTCGGATTTTTTCAAAGAGGGGATCCTTTCTGTATGTACCAAGCTTCTCGGATAATAGCAAAGTTCGCATGTTGGTCTTCTCAACTTATGGAGGAAAATGACTTAATTTATTATTTAAATTGGCTACGTGAACAACTGACAATAACCAATAATCAGTATGACCAAACTGTGGCTCGAAATCTTCAAATGATGCTTCGCATCAGAGAGTACCGTACTCAATTCGCTAAGGTCGGAGGAATCGAGACCATTGGAGATGTTTTGCAAGAAAAATTAA-CTAGTCGTCAATTACAATATCAATTAATTTTTTGTTTATGGTGTATGAGTTTTGATTCAATTCATGTAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAGCAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAATTGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATGAATATATGGCTGAATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAGTTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTAGTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATTGGAGAGTTTGTAAGACATTATCCACGTGGTAAACAAATAATTGAAACACTTGGC-GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGC-AAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAATAATAATAATAATAATAGTAGTAGTAGTATCAGTAGTAATGAGAAAAACTCCAAAAATTTTCGGTCAGTCATTCATTACTATTGTTACCCCAGTATTCATTCTTCTGGGTTAGTGTTACTGTTATCGTTAGTAAAAAATTTTGTTGGTGTTGTTGTTGCTATAGTTAATCCTTCATGATGATTCTCTCGTTCTTGAAATCAATATAGATAAACATGCATAATGATAATAATCGATTTTTGTTTTGTTTGTTTTGTTTTCGTTGAT]
[+] EMBL AI976420 [ACGCTCGAGTTGGTAATATTGAAGATATCACGTCAATCGGTTCAACCACCAGCTTTCTACAGGCTACAGCAGCTGAGGTTAGATCAACACGAGTAAACTGGCAATCTTACCTTCAAGGACAAATAATTAATGATGAACAGTACTCATTCATAACACGACTGGATAATGCTCCTACTGCGGAAGCACGAAATCATGTAATTAGGGCTGATGAAAACATGACCGCTAGGGTTTTTATATTCATCCTAAATAAAATCTCGAAAGAACAAACATTACGATATATCCTTACACTTATTGATGATATGCTTCAGGAAGACAAATTGCGTGTTGAAATCTTTCGTGATTACTTCTCCAAGTCAAAAGAATCACTTTGGTCTCATTTTTTCGGATTTTTTCAAAGAGGGGATCCTTTCTGTATGTACCAAGCTTCTCGGATAATAGCAAAGTTCGCATGTTGGTCTTCTCAACTTATGGAGGAAAATGACTTAATTTATTATTTAAATTGGCTACGTGAAC ]
[+] EMBL AI977126 [ AGCAAAGTTCGCATGTTGGTCTTCTCAACTTATGGAGGAAAATGACTTAATTTATTATTTAAATTGGCTACGTGAACAACTGACAATAACCAATAATCAGTATGACCAAACTGTGGCTCGAAATCTTCAAATGATGCTTCGCATCAGAGAGTACCGTACTCAATTCGCTAAGGTCGGAGGAATCGAGACCATTGGAGATGTTTTGCAAGAAAAATTAA CTAGTCGTCAATTACAATATCAATTAATTTTTTGTTTATGGTGTATGAGTTTTGATTCAATTCATGTAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAGCAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAATTGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAAAAGAA TAGAA ]
[+] EMBL CD082938 [ AGATGTTTTGCAAGAAAAATTAACCTAGTCGTCAATTACAATATCAATTAATTTTTTGTTTATGGTGTATGAGTTTTGATTCAATTCATGTAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAGCAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAATTGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATGAATATATGGCTGAATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAGTTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTAGTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATTGGAGAGTTTGTAAGACATTATCCACGTGGTAAACANATAATTGAAACACTTGGCGGGTAA ]
[+] EMBL CD169014 [ TTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATGAATATATGGCTGAATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAGTTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTAGTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATTGGAGAGTTTGTAAGACATTATCCACGTGGTAAACAAATAATTGAAACACTTGGC GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGC AAAAAATAATGGTACATGATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGA AATAATAATAATAATAATAGTAGTAGTAGTATCAGTAGTAATGAGAAAAACTCCAAAATTTT ]
[+] EMBL CD169119 [ TTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATGAATATATGGCTGAATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAGTTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTAGTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATTGGAGAGTTTGTAAGACATTATCCACGTGGTAAACAAATAATTGAAACACTTGGC GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGCAAAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAAT ]
[+] EMBL CD169552 [ TTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATGAATATATGGCTGAATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAGTTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTAGTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATTGGAGAGTTTGTAAGACATTATCCACGTGGTAAACAAATAATTGAAACACTTGGC GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGC AAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAATAATAATAATAATAATAGTAGTAGTAGTATCAGTAGTAATGAGAAAAACTCCAAAAATTTTt ]
[+] EMBL CD169007 [ tcACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATTTTTATATGGCTGAATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAGTTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTAGTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATTGGAGAGTTTGTAAGACATTATCCACGTGGTAAACAAATAATTGAAACACTTGGC GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGC AAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAATAATAATAATAATAATAGTAGTAGTAGTATC ]
[-] EMBL CD077008 [ CACTTGGC GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGC AAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAATAATAATAATAATAATAGTAGTAGTAGTATCAGTAGTAATGAGAAAAACTCCAAAAATTTTCGGTCAGTCATTCATTACTATTGTTACCCCAGTATTCATTCTTCTGGGTTAGTGTTACTGTTATCGTTAGTAAAAAATTTTGTTGGTGTTGTTGTTGCTATAGTTAATCCTTCATGATGATTCTCTCGTTCTTGAAATCAATATAGATAAACATGCATAATGATAATAATCGATTTTTGTTTTGTTTGTTTTGTTTTCGTTGAT]
[-] EMBL CD076523 [ TTGGC GGTAAACAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTTTCATTGC AAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTTCAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAATAATAATAATAATAATAGTAGTAGTAGTATCAGTAGTAATGAGAAAAACTCCAAAAATTTTCGGTCAGTCATTCATTACTATTGTTACCCCAGTATTCATTCTTCTGGGTTAGTGTTACTGTTATCGTTAGTAAAAAATTTTGTTGGTGTTGTTGTTGCTATAGTTAATCCTTCATGATGATTCTCTCGTTCTTGAAATCAATATAGATAAACATGCATAATGATAATAATCGATTTTTGTTTTGTTTGTTTTGTTTTCGTTGAT]
consensusID : consensus_9544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence
[AAATCTTTTTGATTCAATTCATGTAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAGCAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAATTGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGTAAGTTAATTCTTTCTGTTACTGTGAAGTCTCATGCTATCTTTGTTGTGATGGGCGATATCCGAAATTTGATATTGATACACAATGTGCTATGCGCTAACTTCCCCCCCCCCCTAGACGACTACTTGGGCGAGAAAGTGTATTAGACTACCGAATAAAATGTACAAATACTCAT]
[+] EMBL CD067257 [AAATCTTTTTGATTCAATTCATGTAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAGCAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAATTGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAAAAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATATTTCATTCTTAAATGTAAGTTAATTCTTTCTGTTACTGTGAAGTCTCATGCTATCTTTGTTGTGATGGGCGATATCCGAAATTTGATATTGATACACAATGTGCTATGCGCTAACTTCCCCCCCCCCCTAGACGACTACTTGGGCGAGAAAGTGTATTAGACTACCGAATAAAATGTACAAATACTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9544#0 ACGCTCGAGTTGGTAATATTGAAGATATCACGTCAATCGGTTCAACCACCAGCTTTCTAC 60
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 AGGCTACAGCAGCTGAGGTTAGATCAACACGAGTAAACTGGCAATCTTACCTTCAAGGAC 120
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 AAATAATTAATGATGAACAGTACTCATTCATAACACGACTGGATAATGCTCCTACTGCGG 180
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 AAGCACGAAATCATGTAATTAGGGCTGATGAAAACATGACCGCTAGGGTTTTTATATTCA 240
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 TCCTAAATAAAATCTCGAAAGAACAAACATTACGATATATCCTTACACTTATTGATGATA 300
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 TGCTTCAGGAAGACAAATTGCGTGTTGAAATCTTTCGTGATTACTTCTCCAAGTCAAAAG 360
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 AATCACTTTGGTCTCATTTTTTCGGATTTTTTCAAAGAGGGGATCCTTTCTGTATGTACC 420
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 AAGCTTCTCGGATAATAGCAAAGTTCGCATGTTGGTCTTCTCAACTTATGGAGGAAAATG 480
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 ACTTAATTTATTATTTAAATTGGCTACGTGAACAACTGACAATAACCAATAATCAGTATG 540
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 ACCAAACTGTGGCTCGAAATCTTCAAATGATGCTTCGCATCAGAGAGTACCGTACTCAAT 600
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 TCGCTAAGGTCGGAGGAATCGAGACCATTGGAGATGTTTTGCAAGAAAAATTAACTAGTC 660
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 GTCAATTACAATATCAATTAATTTTTTGTTTATGGTGTATGAGTTTTGATTCAATTCATG 720
consensus_9544#1 -------------------------------------AAATCTTTTTGATTCAATTCATG 23
* *****************
consensus_9544#0 TAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAG 780
consensus_9544#1 TAACTGATATATGTAAGAATTCTGCATTATTGGCCACTGTAGCTGATATTTTCCTTGAAG 83
************************************************************
consensus_9544#0 CAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAAT 840
consensus_9544#1 CAGATAGGGAAAAAATTACTAGAATTTCATTGGCATTCTTTCGTAGTATTTTAGAAAAAT 143
************************************************************
consensus_9544#0 TGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAA 900
consensus_9544#1 TGCCTACAAACGCTGAACAAAGAGATTGTGGTTTACGTTTAGTTCAATATAAAGTCTTAA 203
************************************************************
consensus_9544#0 AAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATA 960
consensus_9544#1 AAGAATTAGAATTACTGAATCAAAAAGATTTTAGTCATGATCCTGAATTAACTGAAGATA 263
************************************************************
consensus_9544#0 TTTCATTCTTAAATGAGAAATTATCAGCTAGTATTCAAGATGTAAGCAGTCTTGATGAAT 1020
consensus_9544#1 TTTCATTCTTAAATGT-AAGTTAATTCTTTCTGTT---ACTGTGAAGTCTCATGCTATCT 319
*************** ** *** * * ** *** * ** ** * *
consensus_9544#0 ATATGGCTG-AATTAAAATCTGGTCGATTAGAATGGTCACCTGTTCATAAATCAGAAAAG 1079
consensus_9544#1 TTGTTGTGATGGGCGATATCCGAAATTTGATATTGATACACAATGTGCTATGCGCTAACT 379
* * * * *** * * * * ** * * * * * **
consensus_9544#0 TTTTGGTATGAAAATGCAGTGAAATTTACAGACAATAATTATGAAATGTTAAAAATGTTA 1139
consensus_9544#1 TCCCCCCCCCCCTAGACGACTACTTGGGCGAGAAAGTGTATTAGACTACCGAATAAAAT- 438
* * * * * * ** * * * * ** * *
consensus_9544#0 GTACGATTAGTCGAACTGGGTTCTGATCCATTAACATTATCTGTGGCTGTACATGATATT 1199
consensus_9544#1 GTACAAATACTCAT---------------------------------------------- 452
**** * ** **
consensus_9544#0 GGAGAGTTTGTAAGACATTATCCACGTGGTAAACAAATAATTGAAACACTTGGCGGTAAA 1259
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 CAATTAGTGATGGCTTTACTACAGCATGATGATCCAAATGTTCGTTATAATGCTTTAGTT 1319
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 TCATTGCAAAAAATAATGGTACATAATTGGGAATATTTGGGTAAACAATTGGATTCAGTT 1379
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 CAAAGTACTGATGTGAAATCAACTGGAGTAAAAGTGAAATAATAATAATAATAATAATAG 1439
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 TAGTAGTAGTATCAGTAGTAATGAGAAAAACTCCAAAAATTTTCGGTCAGTCATTCATTA 1499
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 CTATTGTTACCCCAGTATTCATTCTTCTGGGTTAGTGTTACTGTTATCGTTAGTAAAAAA 1559
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 TTTTGTTGGTGTTGTTGTTGCTATAGTTAATCCTTCATGATGATTCTCTCGTTCTTGAAA 1619
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 TCAATATAGATAAACATGCATAATGATAATAATCGATTTTTGTTTTGTTTGTTTTGTTTT 1679
consensus_9544#1 ------------------------------------------------------------
consensus_9544#0 CGTTGAT 1686
consensus_9544#1 -------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||