These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1537 fasta sequence [TTCGATAACCACTATGAATACGCAGAGTTCGTTACTTAATCTAAAAGGTTGTAATGGTTCTCAAAGTTTATCTGGAGATAATCAACATTCTAATCATTTTCAGTCTCACTTACTGAATGGGACTTATTTTGACAGTGCTCAAACGAATGGCTGTGAGGATGTAATTTCTGGTGATGCTTCTGCTTGTAATGGCAACTCAAGCAATCAGTGTGCACTAAATAATGACTCAAGAATGTTAACAACTCCATTTAGTCTAAACAATGGCCACTTTAATCATCGTTCTTCAACTACATCAACTGACGGTGCATCTAATGGATTCCAAATGTGTATTCCACGTACTGTTCAGAGCTTCGACTTATCTCTACCAAATGATTTCCTTACTAATATAAATCGTGCCCCTGGTTCTAATTTGGTTTCTGACATATGGAACTCAGTAGCTCCGCCATTCACCTCAGTTCCAACGGATTCCAGTTCACAACTTCATGGTTACGTTGGCTCTAGTTCCACACTAAATAATATAATGAATCCGTCATCACCTAGTCGTAATGGCAATTCTAT-CAATTGTTCAAATCGTATTATAAGTAGTCGTACATTAGATAATTCTTTCGACACTGCAATTTTCAACTTCAGCGACACAAGACGGGAAACAGATGGTGACATCAGCCCAACTATCTTGCTTCATGACCGTTTACAACATGAACAAGATCTACACCAACCTCTAACTCGTCGACATAGTGATTGGATCGTCCCTTCTTCTCATTTGCTGACTGAGCTTTCAGCTGATTCAGGGGATACTGCTTCTTCACCAGGTCGTCATAATGTAGTTATCGATAGTGAACCAAATTCACAGTCATATTCGGTAAACAACTTTAATTTTATCCATGATTTAGATCAGTTATGTTTGAGCTCGTCCTGTGATAAAGATGCTGCTACCAATGTTACTACCACGATATGCACCACATTGAATAACTGTGTAACTATTTGTCCTCCTGGTTTTGAAACACATGACCTCAACGAAAACGAATCTGTCTTCAGTCTTAAAACTAAGGAGTCGCTGGTAAATTCTACTAAACTCTGGTCATCTTCAAATCCTAGTAAAACTCACTGTACTGGTAATATTACTAGTAATACTATAAATGGTGTTAAAAATATTAATATTTCTCATAATCTACCACCACCATGTACTGAATCACTTGTTGGATCAAGAATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCAAGCCTGCAATCCAATTCCTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAGTTTCTTTTGGCCTCAAGCTAATAATGATCCCATATCGATTTGTTGTTCATCAAATAACATGGACGATTCTTTTGGATTTTCTTATTTGGAAAGTGAGAATCAGTTTCAACACCATCAAAGTGATGCTGCTACGCGAAGTTCATCATTTTTTCCTGAAAATTTAAACGAATACACCGGTTCGATTGGGATTAATAATGGTAGTAATAATGGTAATAAT] [+] EMBL CD178520 [TTCGATAACCACTATGAATACGCAGAGTTCGTTACTTAATCTAAAAGGTTGTAATGGTTCTCAAAGTTTATCTGGAGATAATCAACATTCTAATCATTTTCAGTCTCACTTACTGAATGGGACTTATTTTGACAGTGCTCAAACGAATGGCTGTGAGGATGTAATTTCTGGTGATGCTTCTGCTTGTAATGGCAACTCAAGCAATCAGTGTGCACTAAATAATGACTCAAGAATGTTAACAACTCCATTTAGTCTAAACAATGGCCACTTTAATCATCGTTCTTCAACTACATCAACTGACGGTGCATCTAATGGATTCCAAATGTGTATTCCACGTACTGTTCAGAGCTTCGACTTATCTCTACCAAATGATTTCCTTACTAATATAAATCGTGCCCCTGGTTCTAATTTGGTTTCTGACATATGGAACTCAGTAGCTCCGCCATTCACCTCAGTTCCAACGGATTCCAGTTCACAACTTCATGGTTACGTTGGCTCTAGTTCCACACTAAATAATATAATGAATCCGTCATCACCTAGTCGTAATGGCAATTCTAT CAATTGTTCAAATCGTATTATAAGTAGTCGTACATTAGATAA ] [+] EMBL CD164991 [ TTAGTCTAAACAATGGCCACTTTAATCATCGTTCTTCAACTACATCAACTGACGGTGCATCTAATGGATTCCAAATGTGTATTCCACGTACTGTTCAGAGTTTCGACCTATCTCTACCAAATGATTTCCTTACTAATATAAATCGTGCCCCTGGTTCTAATTTGGTTTCTGACATATGGAACTCAGTAGCTCCGCCATTCACCTCAGTTCCAACGGATTCCAGTTCACAACTTCATGGTTACGTTGGCTCTAGTTCCACACTAAATAATATAATGAATCCGTCATCACCTAGTCGTAATGGCAATTCTATNCATTTG ] [+] EMBL CD164988 [ TTAGTCTAAACAATGGCCACTTTAATCATCGTTCTTCAACTACATCAACTGACGGTGCATCTAATGGATTCCAAATGTGTATTCCACGTACTGTTCAGAGCTTCGACTTATCTCTACCAAATGATTTCCTTACTAATATAAATCGTGCCCCTGGTTCTAATTTGGTTTCTGACATATGGAACTCAGTAGCTCCGCCATTCACCTCAGTTCCAACGGATTCCAGTTCACAACTTCATGGTTACGTAGGCTCTAGTTCCACACTANATAATATAATGAATCCGTCATCACCTAGTCGTAAT ] [-] EMBL CD189891 [ ATGATTTCCTTACTAATATAAATCGTGCCCCTGGTTCTAATTTGGTTTCTGACATATGGAACTCAGTAGCTCCGCCATTCACCTCAGTTCCAACGGATTCCAGTTCACAACTTCATGGTTACGTTGGCTCTAGTTCCACACTAAATAATATAATGAATCCGTCATCACCTAGTCGTAATGGCAATTCTAT CAATTGTTCAAATCGTATTATAAGTAGTCGTACATTAGATAATTCTTTCGACACTGCAATTTTCAACTTCAGCGACACAAGACGGGAAACAGATGGTGACATCAGCCCAACTATCTTGCTTCATGACCGTTTACAACATGAACAAGATCTACACCAACCTCTAACTCGTCGACATAGTGATTGGATCGTCCCTTCTTCTCATTTGCTGACTGAGCTTTCAGCTGATTCAGGGGATACT ] [+] EMBL CD067498 [ TTCACCTCAGTTCCAACGGATTCCAGTTCACAACTTCATGGTTACGTTGGCTCTAGTTCCACACTAAATAATATAATGAATCCGTCATCACCTAGTCGTAATGGCAATTCTAT CAATTGTTCAAATCGTGTTATAAGTAGTCGTACATTAGATAATTCTTTCGACACTGCAATTTTCAACTTCAGCGACACAAGACGGGAAACAGATGGTGACATCAGCCCAACTATCTTGCTTCATGACCG TTACAACATGAACAAGATCTACACCAACCTCTAACTCGTCGACATAGTGATTGGATCGTCCCTTCTTCTCATTTGCTGACTGAGCTTTCAGCTGATTCAGGGGATACTGCTTCTTCACCAGGTCGTCATAATGTAGTTATCGATAGTGAACCAAATTCACAGTCATATTCG ] [+] EMBL CD164560 [ ATGGTGACATCAGCCCAGCTATCTTGCTTCATGACCGTTTACAACATGAACAAGATCTACACCAACCTCTAACTCGTCGACATAGTGATTGGATCGTCCCTTCTTCTCATTTGCTGACTGAGCTTTCAGCTGATTCAGGGGATACTGCTTCTTCACCAGGTCGTCATAATGTAGTTATCGATAGTGAACCAAATTCACAGTCATATTCGGTAAACAACTTTAATTTTATCCATGATTTAGATCAGTTATGTTTGAGCTCGTCCTGTGATAAAGATGCTGCTACCAATGTTACTACCACGATATGCACCACATTGAATAACTGTGTAACTATTTGTCCTCCTGGTTTTGAAACACATGACCTCAACGAAAACGAATCTGTCTTCAGTC ] [+] EMBL CD132063 [ ACTATTTGTCCTCCTGGTTTTGAAACACATGACCTCAACGAAAACGAATCTGTCTTCAGTCTTAAAACTAAGGAGTCGCTGGTAAATTCTACTAAACTCTGGTCATCTTCAAATCCTAGTAAAACTCACTGTACTGGTAATATTACTAGTAATACTATAAATGGTGTTAAAAATATTAATATTTCTCATAATCTACCACCACCATGTACTGAATCACTTGTTGGATCAAGAATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCAAGCCTGCAATCCAATTCCTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAGTTTCTTTTGGGCTCAAGCTAATA ] [-] EMBL CD197661 [ ACACATGACCTCAACGAAAACGAATCTGTCTTCAGTCTTAAAACTAAGGAGTCGCTGGTAAATTCTACTAAACTCTGGTCATCTTCAAATCCTAGTAAAACTCACTGTACTGGTAATATTACTAGTAATACTATAAATGGTGTTAAAAATATTAATATTTCTCATAATCTACCACCACCATGTACTGAATCACTTGTTGGATCAAGAATATTTTCTAATACCTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCAAGCCTGCAATCCAATTCCTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAGTTTCTTTTGGCCTCAAGCTAATAATGATCCCATAT ] [+] EMBL CD163324 [ CTGGTCATCTTCAAATCCTAGTAAAACTCACTGTACTGGTAATATTACTAGTAATACTATAAATGGTGTTAAAAATATTAATATTTCTCATAATCTACCACCACCATGTACTGAATCACTTGTTGGATCAAGAATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCAAGCCTGCAATCCAATTCCTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAGTTTCTTTTGGCCTCAAGCTAATAATGATCACATTCCGATTTGTTGTTCATCAAATAACATGGACGATTCTTTTGGATTTTCTTATTTGGAAAGTGAGAATCAGTTTCAACACCATCAAAGTGATGCTGCTACGCGAAGTTCATCATTTTTTCCTGAAAATTTAAACGAATACACCGGTTCGATTGGGATTAATAATGGTAGTAATAATGGTAATAAT] consensusID : consensus_9547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [ATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCAAGCATGCAATCCAATTCGTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAGTTTCTTTTGGCCTCAAGATAATAATGATCACATTCCGATTTGTTGTTCATCAAATAACATGGACGATTCTTTTGGATTTTCTTATTTGGAAAGTGAGAATCAGTTTCAACACCATCAAAGTGATGCTGCTACGAGAAGTTCATCATTTTTTCTTGATTCCCACCTTG] [-] EMBL CD067185 [ATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCAAGCATGCAATCCAATTCGTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAGTTTCTTTTGGCCTCAAGATAATAATGATCACATTCCGATTTGTTGTTCATCAAATAACATGGACGATTCTTTTGGATTTTCTTATTTGGAAAGTGAGAATCAGTTTCAACACCATCAAAGTGATGCTGCTACGAGAAGTTCATCATTTTTTCTTGATTCCCACCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9547#0 TTCGATAACCACTATGAATACGCAGAGTTCGTTACTTAATCTAAAAGGTTGTAATGGTTC 60 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 TCAAAGTTTATCTGGAGATAATCAACATTCTAATCATTTTCAGTCTCACTTACTGAATGG 120 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 GACTTATTTTGACAGTGCTCAAACGAATGGCTGTGAGGATGTAATTTCTGGTGATGCTTC 180 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 TGCTTGTAATGGCAACTCAAGCAATCAGTGTGCACTAAATAATGACTCAAGAATGTTAAC 240 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 AACTCCATTTAGTCTAAACAATGGCCACTTTAATCATCGTTCTTCAACTACATCAACTGA 300 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 CGGTGCATCTAATGGATTCCAAATGTGTATTCCACGTACTGTTCAGAGCTTCGACTTATC 360 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 TCTACCAAATGATTTCCTTACTAATATAAATCGTGCCCCTGGTTCTAATTTGGTTTCTGA 420 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 CATATGGAACTCAGTAGCTCCGCCATTCACCTCAGTTCCAACGGATTCCAGTTCACAACT 480 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 TCATGGTTACGTTGGCTCTAGTTCCACACTAAATAATATAATGAATCCGTCATCACCTAG 540 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 TCGTAATGGCAATTCTATCAATTGTTCAAATCGTATTATAAGTAGTCGTACATTAGATAA 600 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 TTCTTTCGACACTGCAATTTTCAACTTCAGCGACACAAGACGGGAAACAGATGGTGACAT 660 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 CAGCCCAACTATCTTGCTTCATGACCGTTTACAACATGAACAAGATCTACACCAACCTCT 720 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 AACTCGTCGACATAGTGATTGGATCGTCCCTTCTTCTCATTTGCTGACTGAGCTTTCAGC 780 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 TGATTCAGGGGATACTGCTTCTTCACCAGGTCGTCATAATGTAGTTATCGATAGTGAACC 840 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 AAATTCACAGTCATATTCGGTAAACAACTTTAATTTTATCCATGATTTAGATCAGTTATG 900 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 TTTGAGCTCGTCCTGTGATAAAGATGCTGCTACCAATGTTACTACCACGATATGCACCAC 960 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 ATTGAATAACTGTGTAACTATTTGTCCTCCTGGTTTTGAAACACATGACCTCAACGAAAA 1020 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 CGAATCTGTCTTCAGTCTTAAAACTAAGGAGTCGCTGGTAAATTCTACTAAACTCTGGTC 1080 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 ATCTTCAAATCCTAGTAAAACTCACTGTACTGGTAATATTACTAGTAATACTATAAATGG 1140 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 TGTTAAAAATATTAATATTTCTCATAATCTACCACCACCATGTACTGAATCACTTGTTGG 1200 consensus_9547#1 ------------------------------------------------------------ consensus_9547#0 ATCAAGAATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCA 1260 consensus_9547#1 -------ATATTTTCTAATACTTCTGTACTGCAACGTTTGTTCAATAATCCAACAAGTCA 53 ***************************************************** consensus_9547#0 AGCCTGCAATCCAATTCCTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAG 1320 consensus_9547#1 AGCATGCAATCCAATTCGTACGAATAACAATGATCTTAATATGTCCGGCCGTTTGAACAG 113 *** ************* ****************************************** consensus_9547#0 TTTCTTTTGGCCTCAAGCTAATAATGATCCCATATCGATTTGTTGTTCATCAAATAACAT 1380 consensus_9547#1 TTTCTTTTGGCCTCAAGATAATAATGATCACATTCCGATTTGTTGTTCATCAAATAACAT 173 ***************** *********** *** ************************* consensus_9547#0 GGACGATTCTTTTGGATTTTCTTATTTGGAAAGTGAGAATCAGTTTCAACACCATCAAAG 1440 consensus_9547#1 GGACGATTCTTTTGGATTTTCTTATTTGGAAAGTGAGAATCAGTTTCAACACCATCAAAG 233 ************************************************************ consensus_9547#0 TGATGCTGCTACGCGAAGTTCATCATTTTTTCCTGAAAATTTAAACGAATACACCGGTTC 1500 consensus_9547#1 TGATGCTGCTACGAGAAGTTCATCATTTTTTCTTGATTCCCACCTTG------------- 280 ************* ****************** *** * consensus_9547#0 GATTGGGATTAATAATGGTAGTAATAATGGTAATAAT 1537 consensus_9547#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||