cluster # 9550

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Schistosoma mansoni
cluster # 9550 cluster # 9550 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9550#0 length = 913 sequences # 6

consensus_9550#1 length = 431 sequences # 3
consensus_9550#2 length = 221 sequences # 1

consensusID : consensus_9550#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 913
fasta sequence

                              [TTTCCTTCCATGACCATCCCGAGGAGGTCGGAAACTCCTATAGTCAACACTGAGTACGCCAGTTTCTTCACTAATATGGCGTAAAGTTTTCGCATCGAAATTATCCCGTTTTTCAACTAATAAACTGGTTTCATCCAACACAATATTTCCATTGGCATCAATTCGCAGTTGAGGAGCTAATGGATCCGAATAAACATCACTCGATGAACACTTTGCGGAGTTTTCCTTCAAATCAGGAGTTTCAGTGTTATTGTCATGAGATTTGAGGTCATGATCACTTGCTTCCACGTCACTACTTAGTGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAACTTGTCTAGTAGTAAATTGTATAAACAGAACTTACGTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGAGTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTGATTTCTTGAGTTTCAACTTCATTTGTTTTTATATGTGTCTTAACTTGTTTTATCGATGGTCTGAATACTTTCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGGTGACG]

[+] EMBL CD097259             [TTTCCTTCCATGACCATCCCGAGGAGGTCGGAAACTCCTATAGTCAACACTGAGTACGCCAGTTTCTTCACTAATATGGCGTAAAGTTTTCGCATCGAAATTATCCCGTTTTTCAACTAATAAACTGGTTTCATCCAACACAATATTTCCATTGGCATCAATTCGCAGTTGAGGAGCTAATGGATCCGAATAAACATCACTCGATGAACACTTTGCGGAGTTTTCCTTCAAATCAGGAGTTTCAGTGTTATTGTCATGAGATTTGAGGTCATGATCACTTGCTTCCACGTCACTACTTAGTGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAACTTGTCTAGTAGTAAATTGTATAAACAGAACTTACGTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGAGTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGgt                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD093860             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTATAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTGATTTCCTGAGTTTCAACTTCATTTGTTTTTATATGTGTCTTAACTTGTTTTATCGATGGTCTGAATACTTTCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCTCAAGGTGACG]
[-] EMBL CD093853             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTGATTTCTTGAGTTTCAACTTCATTTGTTTTTATACGTGTCTTAACTTGTTTTATCGATGGTCTGAATACCTTCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGGTGACG]
[-] EMBL CD093870             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTGATTTCTTGAGTTTCAACTTCATTTGTTTTTATATGTGTCTTAACTTGTTTTATCGATGGTCTGAATACTTCCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGGTGACG]
[-] EMBL AI976058             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTGATTTCTTGAGTTTCAACTTCATTTGTTTTTATATGTGTCTTAACTTGTTTTATCGATGGTCTGAATACTTTCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGG     ]
[-] EMBL CD093851             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTGATTTCTTGAGTTTCAACTTCATTTGTTTTTATATGTGTCTTAACTTGTTTTATCGATGGTCTGAATACTTTCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGGTGACG]




>consensus_9550#0
TTTCCTTCCATGACCATCCCGAGGAGGTCGGAAACTCCTATAGTCAACACTGAGTACGCC
AGTTTCTTCACTAATATGGCGTAAAGTTTTCGCATCGAAATTATCCCGTTTTTCAACTAA
TAAACTGGTTTCATCCAACACAATATTTCCATTGGCATCAATTCGCAGTTGAGGAGCTAA
TGGATCCGAATAAACATCACTCGATGAACACTTTGCGGAGTTTTCCTTCAAATCAGGAGT
TTCAGTGTTATTGTCATGAGATTTGAGGTCATGATCACTTGCTTCCACGTCACTACTTAG
TGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAACTTGTCTAGTAGTAAATTGTATA
AACAGAACTTACGTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGA
GTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACT
TTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGA
GACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTT
TTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTA
ATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTGATT
TCTTGAGTTTCAACTTCATTTGTTTTTATATGTGTCTTAACTTGTTTTATCGATGGTCTG
AATACTTTCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTGTGC
TCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCT
TCCCAAGGTGACG

consensusID : consensus_9550#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 431
fasta sequence

                              [TTATTGTCATGTGATTTGAGGTCATGATCACTTGCTT-CCACGTCACTACTTAGTGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAAGTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGAGTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGGGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACATCTGATTAGG]

[+] EMBL CD067048             [TTATTGTCATGTGATTTGAGGTCATGATCACTTGCTT CCACGTCACTACTTAGTGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAAGTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGAGTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGGGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTACGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACATCTGATT   ]
[-] EMBL CD067366             [ TATTGTCATGTGATTGAAGGTCAGGATCATTTGCTTCCCAGGTCATTATTTAGTGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAAGTTGAAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGAGTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGTTGTTTTAGGGGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACAT         ]
[+] EMBL CD170994             [                                 GCTT CCACGTCACTACTTAGTGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAAGTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGAGTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTCAATCTCGGAGTAGCTGTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGG]




>consensus_9550#1
TTATTGTCATGTGATTTGAGGTCATGATCACTTGCTTCCACGTCACTACTTAGTGAACAA
GTAGTGGAGTTAAGACGCTCCTGTCGATAAGTTGGAGGCGGTTTATTTGTAGGGACCCAA
TGCAGTAAGGAACGAAGAGTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGT
ACTTCTGTTGTCTTCACTTTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATT
TCTTCGGATACCTGTTGAGACCTTTCAGAATCAACACGAACATCTAGGTCAGGGTCGGTC
AATCTCGGAGTAGCTGTTTTAGGGGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTT
GGCTTAGGTTCACTAGTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGAC
ATCTGATTAGG

consensusID : consensus_9550#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 221
fasta sequence

                              [GACACAACAAAAGACAGGTTTTTAGGTTGAGGAGTTACTGACTCAGGATAAGTTTTTCCGACTGAGATTGGCCAGTAGCAGACATTCGAACGAACTTACAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGGTGACGGCCTACACCAAAGGCCAGACGAGTGACGCAAGAAT]

[+] EMBL CD185993             [GACACAACAAAAGACAGGTTTTTAGGTTGAGGAGTTACTGACTCAGGATAAGTTTTTCCGACTGAGATTGGCCAGTAGCAGACATTCGAACGAACTTACAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAGGTGACGGCCTACACCAAAGGCCAGACGAGTGACGCAAGAAT]




>consensus_9550#2
GACACAACAAAAGACAGGTTTTTAGGTTGAGGAGTTACTGACTCAGGATAAGTTTTTCCG
ACTGAGATTGGCCAGTAGCAGACATTCGAACGAACTTACAAACGATACTGTGCTCTGGAT
TTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAAGCTTCCCAAG
GTGACGGCCTACACCAAAGGCCAGACGAGTGACGCAAGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9550#0      TTTCCTTCCATGACCATCCCGAGGAGGTCGGAAACTCCTATAGTCAACACTGAGTACGCC 60
consensus_9550#1      ------------------------------------------------------------
consensus_9550#2      ------------------------------------------------------------
                                                                                  

consensus_9550#0      AGTTTCTTCACTAATATGGCGTAAAGTTTTCGCATCGAAATTATCCCGTTTTTCAACTAA 120
consensus_9550#1      ------------------------------------------------------------
consensus_9550#2      ------------------------------------------------------------
                                                                                  

consensus_9550#0      TAAACTGGTTTCATCCAACACAATATTTCCATTGGCATCAATTCGCAGTTGAGGAGCTAA 180
consensus_9550#1      ------------------------------------------------------------
consensus_9550#2      ------------------------------------------------------------
                                                                                  

consensus_9550#0      TGGATCCGAATAAACATCACTCGATGAACACTTTGCGGAGTTTTCCTTCAAATCAGGAGT 240
consensus_9550#1      ------------------------------------------------------------
consensus_9550#2      ------------------------------------------------------------
                                                                                  

consensus_9550#0      TTCAGTGTTATTGTCATGAGATTTGAGGTCATGATCACTTGCTTCCACGTCACTACTTAG 300
consensus_9550#1      -------TTATTGTCATGTGATTTGAGGTCATGATCACTTGCTTCCACGTCACTACTTAG 53
consensus_9550#2      ------------------------------------------------------------
                                                                                  

consensus_9550#0      TGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAACTTGTCTAGTAGTAAATTGTATA 360
consensus_9550#1      TGAACAAGTAGTGGAGTTAAGACGCTCCTGTCGATAA----------------------- 90
consensus_9550#2      ------------------------------------------------------------
                                                                                  

consensus_9550#0      AACAGAACTTACGTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGA 420
consensus_9550#1      ------------GTTGGAGGCGGTTTATTTGTAGGGACCCAATGCAGTAAGGAACGAAGA 138
consensus_9550#2      ------------------------------------------------------------
                                                                                  

consensus_9550#0      GTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACT 480
consensus_9550#1      GTGACAGAAGCTCGATCAAGAGGTTGATCTACAGGAGGTAGTACTTCTGTTGTCTTCACT 198
consensus_9550#2      --------GACACAA-CAAAAGACAGGTTTTTAGGTTGAGGAGTTACTG----------- 40
                                * * * *** **   * * *  ***  *  *   * ***           

consensus_9550#0      TTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGA 540
consensus_9550#1      TTAATCTTGCGAGGCTTCTTAGAGACAAATAGGTTTACTATTTCTTCGGATACCTGTTGA 258
consensus_9550#2      --ACTCAGGATAAGTTTTTCCGACTGAGATTGGCCAGTAG------CAGACATTCGAACG 92
                        * **  *  * * ** *  **   * ** **             * ** *   *    

consensus_9550#0      GACCTTTCAGAATCAACACGAACATCTAGGT---CAGGGTCGGTCAATCTCGGAGTAGCT 597
consensus_9550#1      GACCTTTCAGAATCAACACGAACATCTAGGT---CAGGGTCGGTCAATCTCGGAGTAGCT 315
consensus_9550#2      AACTT---ACAAACGATACTGTGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGT 149
                       ** *   * ** * * **     *** * *   **     *     * * * * **  *

consensus_9550#0      GTTTTAGGAGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTA 657
consensus_9550#1      GTTTTAGGGGTTTCACACGGATTCTGTGAAGGAAGTGGTGAACTTGGCTTAGGTTCACTA 375
consensus_9550#2      CCTCTTGGTATTATATACTAAGCTTCCCAAGG---TGACGGCCTACACCAAAGGCCAGAC 206
                        * * **  **  * **  *   *   ****   **  *  **   *  * *  **   

consensus_9550#0      GTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACACCTGATTAGGTCTG 717
consensus_9550#1      GTAATGATGCAGGATGATGACTCCTTAGACGGCTGGGGGTCGGACATCTGATTAGG---- 431
consensus_9550#2      G-AGTGACGCAAGAAT-------------------------------------------- 221
                      * * *** *** **                                              

consensus_9550#0      ATTTCTTGAGTTTCAACTTCATTTGTTTTTATATGTGTCTTAACTTGTTTTATCGATGGT 777
consensus_9550#1      ------------------------------------------------------------
consensus_9550#2      ------------------------------------------------------------
                                                                                  

consensus_9550#0      CTGAATACTTTCGGCATGATTTTGACACAACAAAAGACAGGTTTTTAGGAAACGATACTG 837
consensus_9550#1      ------------------------------------------------------------
consensus_9550#2      ------------------------------------------------------------
                                                                                  

consensus_9550#0      TGCTCTGGATTTTCAAACATGAATGTTGTAGAACTACGTCCTCTTGGTATTATATACTAA 897
consensus_9550#1      ------------------------------------------------------------
consensus_9550#2      ------------------------------------------------------------
                                                                                  

consensus_9550#0      GCTTCCCAAGGTGACG 913
consensus_9550#1      ----------------
consensus_9550#2      ----------------