cluster # 9553

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Schistosoma mansoni
cluster # 9553 cluster # 9553 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9553#0 length = 650 sequences # 4
consensus_9553#1 length = 517 sequences # 3

consensus_9553#2 length = 398 sequences # 2
consensus_9553#3 length = 259 sequences # 1

consensusID : consensus_9553#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 650
fasta sequence

                              [CTCCGAGGCCAANAATTCGGCACGAGGTTTGCTTTCATTTCTTCGCAGCTGACTGTACTTTCGGACGCAATATCACCTTTAATTGCTGAATGGATGAAAAAACTCCTCTAGTAACTGCTGATACCCATGTTGGACGCTCCGTTATCAAACCAGTCATTGAGCGGGCAGTTACCAATGATGGGGATTCCCAAGCCACAGTGAATTGCCAAGTCTGCAGGCAAGTCATTACTTTCATTCCTCGTGAAAAGCAAATGGTGGTTCGATGTCCACATTGTTCCGAGGCGACGCCTATTAAAGGTCCACCAACTGGGAAACAGTATGTTAGATGCCCTTGCAATTGCTTACTTGTCTGCAATGAATCCACAAGCAAAGTTGGTTGTCCTCGACCGGAATGTCAGAAAGTTATTGTTATTCGTGAAGAAGATGGTGTGGGCTTTATGGGTGGTAGCAATAGGTTTTTACAGGGTCCAGCTACACATGGAACGTTTGGTACTCCTCAAAGTCTACGTCTGTCGTGCGGTAATTGTAATTCACCATTTTCCATACCATCACCCGAATCTCATTCGTTTGGACGTATGAATGCGTTTACTGCACTTCTATCTGGCAGGAACCCTTCCATGCTGCANGACTTATAAACCGCAGATGTCCAC]

[+] EMBL CD082733             [CTCCGAGGCCAANAATTCGGCACGAGGTTTGCTTTCATTTCTTCGCAGCTGACTGTACTTTCGGACGCAATATCACCTTTAATTGCTGAATGGATGAAAAAACTCCTCTAGTAACTGCTGATACCCATGTTGGACGCTCCGTTATCAAACCAGTCATTGAGCGGGCAGTTACCAATGATGGGGATTCCCAAGCCACAGTGAATTGCCAAGTCTGCAGGCAAGTCATTACTTTCATTCCTCGTGAAAAGCAAATGGTGGTTCGATGTCCACATTGTTCCGAGGCGACGCCTATTAAAGGTCCACCAACTGGGAAACAGTATGTTAGATGCCCTTGCAATTGCTTACTTGTCTGCAATGAATCCACAAGCAAAGTTGGTTGTCCTCGACCGGAATGTCAGAAAGTTATTGTTATTCGTGAAGAAGATGGTGTGGGCTTTATGGGTGGTAGCAATAGGTTTTTACAGGGTCCAGCTACACATGGAACGTTTGGTACTCCTCAAAGTCTACGTCTGTCGTGCGGTAATTGTAATTCACCATTTTCCATACCATCACCCGAATCTCATTCGTTTGGACGTATGAATGCGTTTACTGCACTTCTATCTGGCAGGAACCCTTCCATGCTGCANGACTTATAAACCGCAGATGTCCAC]
[+] EMBL CD110824             [                                                                                                                                           CGTTATCAAACCAGTCATTGAGCGGGCAGTTACCAATGATGGGGATACCCAAGCCACAGTGAATTGCCAAGTCTGCAGGCAAGTCATTACTTTCATTCCTCGTGAAAAGCAAATGGTGGTTCGATGTCCACATTGTTCCGAGGCGACGCCTATTAAAGGTCCACCAACTGGGAAACAGTATGTTAGATGCCCTTGCAATTGCTTACTTGTCTGCAATGAATCCACAAGCAAAGTTGGTTGTCCTCGACCGGAATGTCAGAAAGTTATTGTTATTCGTGAAGAAGATGGTGTGGGCTTTATGGGTGGTAGCAATAGGTTTTTACAGG                                                                                                                                                                                         ]
[-] EMBL CD149979             [                                                                                                                                            GTTATCAAACCAGTCATTGAGCGGGCAGTTACCAATGATGGGGATTCCCAAGCCACAGTGAATTGCCAAGTCTGCAGGCAAGTCATTACTTTCATTCCTCGTGAAAAGCAAATGGTGGTTCGATGTCCACATTGTTCCGAGGCGACGCCTATTAAAGGTCCACCAACTGGGAAACAGTATGTTAGATGCCCTTGCAATTGCTTACTTGTCTGCAATGAATCCACAAGCAAAGTTGGTTGTCCTCGACCGGAATGTCAGAAAGTTATTGTTATTCGTGAAGAAGATGGTGTGGGCTTTATGGGTGGTAGCAATAGGTTTTTACAGGGTCCAGCT                                                                                                                                                                                 ]
[+] EMBL CD165190             [                                                                                                                                                                                                            GCCAAGTCTGCAGGCAAGTCATTACTTTCATTCCTCGTGAAAAGCAAATGGTGGTTCGATGTCCACATTGTTCCGAGGCGACGCCTATTAAAGGTCCACCAACTGGGAAACAGTATGTTAGATGCCCTTGCAATTGCTTACTTGTCTGCAATGAATCCACAAGCAAAGTTGGTTGTCCTCGTCCGGAATGTCAGAAAGTTATTGTTATTCGTGAAGAAGACGGT                                                                                                                                                                                                                              ]




>consensus_9553#0
CTCCGAGGCCAANAATTCGGCACGAGGTTTGCTTTCATTTCTTCGCAGCTGACTGTACTT
TCGGACGCAATATCACCTTTAATTGCTGAATGGATGAAAAAACTCCTCTAGTAACTGCTG
ATACCCATGTTGGACGCTCCGTTATCAAACCAGTCATTGAGCGGGCAGTTACCAATGATG
GGGATTCCCAAGCCACAGTGAATTGCCAAGTCTGCAGGCAAGTCATTACTTTCATTCCTC
GTGAAAAGCAAATGGTGGTTCGATGTCCACATTGTTCCGAGGCGACGCCTATTAAAGGTC
CACCAACTGGGAAACAGTATGTTAGATGCCCTTGCAATTGCTTACTTGTCTGCAATGAAT
CCACAAGCAAAGTTGGTTGTCCTCGACCGGAATGTCAGAAAGTTATTGTTATTCGTGAAG
AAGATGGTGTGGGCTTTATGGGTGGTAGCAATAGGTTTTTACAGGGTCCAGCTACACATG
GAACGTTTGGTACTCCTCAAAGTCTACGTCTGTCGTGCGGTAATTGTAATTCACCATTTT
CCATACCATCACCCGAATCTCATTCGTTTGGACGTATGAATGCGTTTACTGCACTTCTAT
CTGGCAGGAACCCTTCCATGCTGCANGACTTATAAACCGCAGATGTCCAC

consensusID : consensus_9553#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 517
fasta sequence

                              [ATTGCTTCCTTTGACGATTGTGGAAGTCAGTCGTTTAGGCTCGAAACCATTTTGAGATCTGAAGGTAAGTGGTTTCTGGTGTTTTACTTCGGTTTTGGTTTATATTCGTTTGCTTTCATTTCTTCGCAGCTGACTGTACTTTCGGACGCAATATCACCTTTAATTGCTGAATGGATGAAAAAACTCCTCTAGTAACTGCTGATACCCATGTTGGACGCTCCGTTATCAAACCAGTCATTGAGCGGGCAGTTACCAATGATGGGGATTCCCAAGCCACAGTGAATTGCCAAGTCTGCAGCCTATTAAAGGTCCACCAACTGGGAAACAGTATGTTAGATGCCCTTGCAATTGCTTACTTGTCTGCAATGAATCCACAAGCAAAGTTGGTTGTCCTCGACCGGAATGTCAGAAAGTTATTGTTATTCGTGAAGAAGATGGTGTGGGCTTTATGGGTGGTAGCAATAGGTTTTTACAGGGTCCAGCTACACATGGAACGTTTGGTACTCCTCAAAGTCTA]

[+] EMBL CD094648             [ATTGCTTCCTTTGACGATTGTGGAAGTCAGTCGTTTAGGCTCGAAACCATTTTGAGATCTGAAGGTAAGTGGTTTCTGGTGTTTTACTTCGGTTTTGGTTTATATTCGTTTGCTTTCATTTCTTCGCAGCTGACTGTACTTTCGGACGCAATATCACCTTTAATTGCTGAATGGATGAAAAAACTCCTCTAGTAACTGCTGATACCCATGTTGGACGCTCCGTTATCAAACCAGTCATTGAGCGGGCAGTTACCAATGATGGGGATTCCCAAGCCACAGTGAATTGCCAAGTCTGCAGCCTATTAAAGGTCCACCAACTGGGAAACAGTATGTTAGATGCCCTTGCAATTGCTTACTTGTCTGCAATGAATCCACAAGCAAAGTTGGTTGTCCTCGACCGGAATGTCAGAAAGTTATTGTTATTCGTGAAGAAGATGGTGTGGGCTTTATGGGTGGTAGCAATAGGTTTTTACAGGGTCCAGCTACACATGGAACGTTTGGTACTCCTCAAAGTCTA]
[+] EMBL CD163820             [                                                                                                                                                                                                                                                                                                                                                 TGCCCTTGCGATTGCTTACTTGTCTGCAATGAATCCACAAGCAAAGTTGGTTGTCCTCGACCGGAATGTCAGAAAGTTATTGTTATTCGTGAAGAAGATGGTGTGGGCTTTATGGGTGGTAGCAATAGGTTTTTACAGGGTCCAGCTACACATGGAACGTTTGGTACTCCT         ]
[-] EMBL CD149941             [                                                                                                                                                                                                                                                                                                                                                                    TTGTCTGCAATGAATCCACAAGCAAAGTTGGTTGTCCTCGACCGGAATGTCAGAAAGTTATTGTTATTCGTGAAGAAGATGGTGTGGGCTTTATGGGTGGTAGCAATAGGTTTTTACAGGGTCCAGCT                                 ]




>consensus_9553#1
ATTGCTTCCTTTGACGATTGTGGAAGTCAGTCGTTTAGGCTCGAAACCATTTTGAGATCT
GAAGGTAAGTGGTTTCTGGTGTTTTACTTCGGTTTTGGTTTATATTCGTTTGCTTTCATT
TCTTCGCAGCTGACTGTACTTTCGGACGCAATATCACCTTTAATTGCTGAATGGATGAAA
AAACTCCTCTAGTAACTGCTGATACCCATGTTGGACGCTCCGTTATCAAACCAGTCATTG
AGCGGGCAGTTACCAATGATGGGGATTCCCAAGCCACAGTGAATTGCCAAGTCTGCAGCC
TATTAAAGGTCCACCAACTGGGAAACAGTATGTTAGATGCCCTTGCAATTGCTTACTTGT
CTGCAATGAATCCACAAGCAAAGTTGGTTGTCCTCGACCGGAATGTCAGAAAGTTATTGT
TATTCGTGAAGAAGATGGTGTGGGCTTTATGGGTGGTAGCAATAGGTTTTTACAGGGTCC
AGCTACACATGGAACGTTTGGTACTCCTCAAAGTCTA

consensusID : consensus_9553#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 398
fasta sequence

                              [CGTAGCTGAACTCAGCCCAAATTGAAAATATTGCTTCCTTTGACGATTGTGGAAGTCAGTCGTTTAGGCTCGAAACCATTTTGAGATCTGAAGGTTTATATTCGTTTGCTTTCATTTCTTCGCAGCTGACTGTACTTTCGGACGCAATATCACCTTTAATTGCTGAATGGATGAAAAAACTCCTCTAGTAACTGCTGATACCCATGTTGGACGCTCCGTTATCAAACCAGTCATTGAGCGGGCGGTTACCAATGATGGGGATTCCCAAGCCACAGTGAATTGCCAAGTCTGCAGGCAAGTCATTACTTTCATTCCTCGTGAAAAGCAAATGGTGGTTCGATGTCCACATTGTTCCGAGGCGACGCCTATTAAAGGTCCACCAACTGGGAAACAGTATG]

[+] EMBL CD121078             [CGTAGCTGAACTCAGCCCAAATTGAAAATATTGCTTCCTTTGACGATTGTGGAAGTCAGTCGTTTAGGCTCGAAACCATTTTGAGATCTGAAGGTTTATATTCGTTTGCTTTCATTTCTTCGCAGCTGACTGTACTTTCGGACGCAATATCACCTTTAATTGCTGAATGGATGAAAAAACTCCTCTAGTAACTGCTGATACCCATGTTGGACGCTCCGTTATCAAACCAGTCATTGAGCGGGCGGTTACCAATGA                                                                                                                                               ]
[+] EMBL AI975791             [                                                          GTCGTTTAGGCTCGAAACCATTTTGAGATCTGAAGGTTTATATTCGTTTGCTTTCATTTCTTCGCAGCTGACTGTACTTTCGGACGCAATATCACCTTTAATTGCTGAATGGATGAAAAAACTCCTCTAGTAACTGCTGATACCCATGTTGGACGCTCCGTTATCAAACCAGTCATTGAGCGGGCAGTTACCAATGATGGGGATTCCCAAGCCACAGTGAATTGCCAAGTCTGCAGGCAAGTCATTACTTTCATTCCTCGTGAAAAGCAAATGGTGGTTCGATGTCCACATTGTTCCGAGGCGACGCCTATTAAAGGTCCACCAACTGGGAAACAGTATG]




>consensus_9553#2
CGTAGCTGAACTCAGCCCAAATTGAAAATATTGCTTCCTTTGACGATTGTGGAAGTCAGT
CGTTTAGGCTCGAAACCATTTTGAGATCTGAAGGTTTATATTCGTTTGCTTTCATTTCTT
CGCAGCTGACTGTACTTTCGGACGCAATATCACCTTTAATTGCTGAATGGATGAAAAAAC
TCCTCTAGTAACTGCTGATACCCATGTTGGACGCTCCGTTATCAAACCAGTCATTGAGCG
GGCGGTTACCAATGATGGGGATTCCCAAGCCACAGTGAATTGCCAAGTCTGCAGGCAAGT
CATTACTTTCATTCCTCGTGAAAAGCAAATGGTGGTTCGATGTCCACATTGTTCCGAGGC
GACGCCTATTAAAGGTCCACCAACTGGGAAACAGTATG

consensusID : consensus_9553#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [GCCAAGTCTGCAGGCAAGTCATTACTTTCATTCCCCGTGAAAAGCAAATGGTGGTTCGATGTCCACATTGTTCCGAGGCGACGGTACTTACTTCATCCTCTAACGTATTTTCTAGCCTATTAAAGGTCCACCAACTGGGAAACAGTATGTTAGATGCCCTTGCAATTGCTTACTTGTCCGCAATGAATCCACAAGCAAGGTTGGTTGTCCTCGACCGGAATGTCAGANAGTTATTGTTATTCGTGAAGAAGATGGTGTG]

[+] EMBL CD165157             [GCCAAGTCTGCAGGCAAGTCATTACTTTCATTCCCCGTGAAAAGCAAATGGTGGTTCGATGTCCACATTGTTCCGAGGCGACGGTACTTACTTCATCCTCTAACGTATTTTCTAGCCTATTAAAGGTCCACCAACTGGGAAACAGTATGTTAGATGCCCTTGCAATTGCTTACTTGTCCGCAATGAATCCACAAGCAAGGTTGGTTGTCCTCGACCGGAATGTCAGANAGTTATTGTTATTCGTGAAGAAGATGGTGTG]




>consensus_9553#3
GCCAAGTCTGCAGGCAAGTCATTACTTTCATTCCCCGTGAAAAGCAAATGGTGGTTCGAT
GTCCACATTGTTCCGAGGCGACGGTACTTACTTCATCCTCTAACGTATTTTCTAGCCTAT
TAAAGGTCCACCAACTGGGAAACAGTATGTTAGATGCCCTTGCAATTGCTTACTTGTCCG
CAATGAATCCACAAGCAAGGTTGGTTGTCCTCGACCGGAATGTCAGANAGTTATTGTTAT
TCGTGAAGAAGATGGTGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9553#0      CTCCGAGGCCAANAATTCGGCACGAGGTTTGCTTTCATTTCTTCGCAGCTGACTGTACTT 60
consensus_9553#3      ------------------------------------------------------------
consensus_9553#1      --------------------------ATTGCTTCCTTTGACGATTGTGGAAGTCAGTCGT 34
consensus_9553#2      ------------------------------CGTAGCTGAACTCAGCCCAAATTGAAAATA 30
                                                                                  

consensus_9553#0      TCGGACGCAATATCACCTTTAATTGCTGAATGGATGAAAAAACTCCTCTAGTAACTGCTG 120
consensus_9553#3      ------------------------------------------------------------
consensus_9553#1      TTAGGCTCGAAACCATTTTGAGATCTGAAGGTAAGTGGTTTCTGGTGTTTTACTTCGGTT 94
consensus_9553#2      TTGCTTCCTTTGACGATTGTGGAAGTCAGTCGTTTAGGCTCGAAACCATTTTGAGATCTG 90
                                                                                  

consensus_9553#0      ATACCCATGTTGGACGCTCCGTTATCAAACCAGTCATTGAGCGGGCAGTTACCAATGATG 180
consensus_9553#3      ------------------------------------------------------------
consensus_9553#1      TTGGTTTATATTCGTTTGCTTTCATTTCTTCGCAGCTGACTGTACTTTCGGACGCAATAT 154
consensus_9553#2      AAGGTTTATATTCGTTTGCTTTCATTTCTTCGCAGCTGACTGTACTTTCGGACGCAATAT 150
                                                                                  

consensus_9553#0      GGGATTCCCAAGCCACAGTGAATTGCCAAGTCTGCAGGCAA--GTCATTACTTTCATT-- 236
consensus_9553#3      ------------------------GCCAAGTCTGCAGGCAA--GTCATTACTTTCATT-- 32
consensus_9553#1      CACCTTTAATTGCTGAATGGATGAAAAAACTCCTCTAGTAACTGCTGATACCCATGTTGG 214
consensus_9553#2      CACCTTTAATTGCTGAATGGATGAAAAAACTCCTCTAGTAACTGCTGATACCCATGTTGG 210
                                                 ** **  *  * **  *    ***     **  

consensus_9553#0      -CCTCGTGAAAAGCAAATGGTGGTTCGATGTCCACATTGTTCCGAGGCGACG-------- 287
consensus_9553#3      -CCCCGTGAAAAGCAAATGGTGGTTCGATGTCCACATTGTTCCGAGGCGACGGTACTTAC 91
consensus_9553#1      ACGCTCCGTTATCAAACCAGTCATTGAGCGGGCAGTTACCAATGATGGGGATTCCCAAGC 274
consensus_9553#2      ACGCTCCGTTATCAAACCAGTCATTGAGCGGGCGGTTACCAATGATGGGGATTCCCAAGC 270
                       *     *  *   **   **  **    *  *   *      ** * *           

consensus_9553#0      ------------------------CCTATTAA--AGGTCCACCAACTGGGAAACAGTATG 321
consensus_9553#3      TTCATCCTCTAACGTATTTTCTAGCCTATTAA--AGGTCCACCAACTGGGAAACAGTATG 149
consensus_9553#1      CACAGTGAATTGCCAAGTCTGCAGCCTATTAA--AGGTCCACCAACTGGGAAACAGTATG 332
consensus_9553#2      CACAGTGAATTGCCAAGTCTGCAGGCAAGTCATTACTTTCATTCCTCGTGAAAAG----- 325
                                               * * * *  *  * **      * ****       

consensus_9553#0      TTAGATGCCCTTGCAATTGCTTACTTGTCTGCAATGAATCCACAAGCAAAGTTGGTTGTC 381
consensus_9553#3      TTAGATGCCCTTGCAATTGCTTACTTGTCCGCAATGAATCCACAAGCAAGGTTGGTTGTC 209
consensus_9553#1      TTAGATGCCCTTGCAATTGCTTACTTGTCTGCAATGAATCCACAAGCAAAGTTGGTTGTC 392
consensus_9553#2      -CAAATGGTGGTTCGATGTCCACATTGTTCCGAGGCGACGCCTATTAAAGGTCCACCAAC 384
                        * ***    * * **  *    ****    *    *  *  *   ** **       *

consensus_9553#0      CTCGAC-CGGAATGTCAGAAAGTTATTGTTATTCGTGAAGAAGATGGTGTGGGCTTTATG 440
consensus_9553#3      CTCGAC-CGGAATGTCAGANAGTTATTGTTATTCGTGAAGAAGATGGTGTG--------- 259
consensus_9553#1      CTCGAC-CGGAATGTCAGAAAGTTATTGTTATTCGTGAAGAAGATGGTGTGGGCTTTATG 451
consensus_9553#2      TGGGAAACAGTATG---------------------------------------------- 398
                         **  * * ***                                              

consensus_9553#0      GGTGGTAGCAATAGGTTTTTACAGGGTCCAGCTACACATGGAACGTTTGGTACTCCTCAA 500
consensus_9553#3      ------------------------------------------------------------
consensus_9553#1      GGTGGTAGCAATAGGTTTTTACAGGGTCCAGCTACACATGGAACGTTTGGTACTCCTCAA 511
consensus_9553#2      ------------------------------------------------------------
                                                                                  

consensus_9553#0      AGTCTACGTCTGTCGTGCGGTAATTGTAATTCACCATTTTCCATACCATCACCCGAATCT 560
consensus_9553#3      ------------------------------------------------------------
consensus_9553#1      AGTCTA------------------------------------------------------ 517
consensus_9553#2      ------------------------------------------------------------
                                                                                  

consensus_9553#0      CATTCGTTTGGACGTATGAATGCGTTTACTGCACTTCTATCTGGCAGGAACCCTTCCATG 620
consensus_9553#3      ------------------------------------------------------------
consensus_9553#1      ------------------------------------------------------------
consensus_9553#2      ------------------------------------------------------------
                                                                                  

consensus_9553#0      CTGCANGACTTATAAACCGCAGATGTCCAC 650
consensus_9553#3      ------------------------------
consensus_9553#1      ------------------------------
consensus_9553#2      ------------------------------