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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1086 fasta sequence
[AATGCAATCCATCTTCGTTTCCTTTTACGCATCATTCAAATTCTCAGTCACTTTTACCTTCTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAACTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATCCTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATCGTGGTATGCTCAGTAATACGTGTAGAAATAATAGAAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTTCACTCAAGTTCCTTATCATCCAATGCCTACTTGATAACTAATGAGTAAATAATAGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTCTCTACCACCCCCCTCATTCAAGATTGTTAAACAAACAAACAAACATGCTTTTTCATTTTATTTGCATTTTCCCCCATT]
[+] EMBL AI977283 [AATGCAATCCATCTTCGTTTCCTTTTACGCATCATTCAAATTCTCAGTCACTTTTACCTTCTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAACTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATCCTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCT ]
[+] EMBL CD162739 [ CTTCTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAACTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATCCTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTGATGTTGTTGACAATACTTCATCTCTTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCAT ]
[+] EMBL CD162797 [ CTTCTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAACTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATCCTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAACTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAGTATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATC ]
[-] EMBL CD110899 [ TGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTT ACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCAT ]
[-] EMBL CD066902 [ TCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATCGTGGTATGCTCAGTAATACGTGTAGAAATAATAGCAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTT ]
[+] EMBL CD139994 [ CTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATCCTGGTATGCTCAGTAATACGTGTAGAAATAATAGAAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTTATATTATTACCA TGTTCTGATAACC AAATAATTT ]
[+] EMBL CD133350 [ TAATACGTGTAGAAATAATAGAAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTTCACTCAAGTTCCTTATCATCCAATGCCTACTTGATAACTAATGAGTAAATAATAGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTC ]
[+] EMBL CD133391 [ TAATACGTGTAGAAATAATAGAAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACACATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTTCACTCAAGTTCCTTATCATCCAATGCCTACTTGATAACTAATGAGTAAATAATAGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTC ]
[-] EMBL CD141181 [ ACANC TTACCATTCTCACNAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCAGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTTCACTCAAGTTCCTTATCATCCAATGCCTGCTTGATAACTAATGAGTAAATAATAGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTCTCTACCACCCCCCTCATTCAAGATTGTTAAACAAACAAACAAACATGCTTTTTCATTTTATTTGCATTTTCCCCCATT]
consensusID : consensus_9554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence
[AGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTAGGAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATACCGGACAGAGTGTACTCAATC]
[-] EMBL CD133293 [AGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTAGGAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATACCGGACAGAGTGTACTCAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9554#0 AATGCAATCCATCTTCGTTTCCTTTTACGCATCATTCAAATTCTCAGTCACTTTTACCTT 60
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 CTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAA 120
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 CTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATC 180
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 CTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTT 240
consensus_9554#1 -----------------------------------------------AGAGATGTTCTTT 13
*************
consensus_9554#0 CATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCAC 300
consensus_9554#1 CATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCAC 73
************************************************************
consensus_9554#0 TTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAA 360
consensus_9554#1 TTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAA 133
************************************************************
consensus_9554#0 TTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTC 420
consensus_9554#1 TTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTC 193
************************************************************
consensus_9554#0 TTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATA 480
consensus_9554#1 TTACACAATTAGGAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATA 253
*********** ***********************************************
consensus_9554#0 CCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGG 540
consensus_9554#1 CCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGG 313
************************************************************
consensus_9554#0 TTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTC 600
consensus_9554#1 TTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTC 373
************************************************************
consensus_9554#0 ATATTCCCTATCGTGGTATGCTCAGTAATACGTGTAGAAATAATAGAAATAGTGATATTA 660
consensus_9554#1 ATATTCCCTATACCGG-ACAGAGTGTACTCAATC-------------------------- 406
*********** ** * *** * *
consensus_9554#0 ATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCAT 720
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 TCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATA 780
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 ATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTG 840
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 TTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAG 900
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 GACATTTCACTCAAGTTCCTTATCATCCAATGCCTACTTGATAACTAATGAGTAAATAAT 960
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 AGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTCTCTACCACCCCC 1020
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 CTCATTCAAGATTGTTAAACAAACAAACAAACATGCTTTTTCATTTTATTTGCATTTTCC 1080
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 CCCATT 1086
consensus_9554#1 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||