cluster # 9554

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9554 cluster # 9554 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9554#0 length = 1086 sequences # 9

consensus_9554#1 length = 406 sequences # 1

consensusID : consensus_9554#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1086
fasta sequence

                              [AATGCAATCCATCTTCGTTTCCTTTTACGCATCATTCAAATTCTCAGTCACTTTTACCTTCTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAACTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATCCTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATCGTGGTATGCTCAGTAATACGTGTAGAAATAATAGAAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTTCACTCAAGTTCCTTATCATCCAATGCCTACTTGATAACTAATGAGTAAATAATAGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTCTCTACCACCCCCCTCATTCAAGATTGTTAAACAAACAAACAAACATGCTTTTTCATTTTATTTGCATTTTCCCCCATT]

[+] EMBL AI977283             [AATGCAATCCATCTTCGTTTCCTTTTACGCATCATTCAAATTCTCAGTCACTTTTACCTTCTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAACTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATCCTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD162739             [                                                         CTTCTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAACTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATCCTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTGATGTTGTTGACAATACTTCATCTCTTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD162797             [                                                         CTTCTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAACTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATCCTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAACTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAGTATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD110899             [                                                                                                                                                                                                                   TGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTT  ACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD066902             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATCGTGGTATGCTCAGTAATACGTGTAGAAATAATAGCAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTT                                                                                                                                                                                   ]
[+] EMBL CD139994             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATCCTGGTATGCTCAGTAATACGTGTAGAAATAATAGAAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTTATATTATTACCA TGTTCTGATAACC AAATAATTT                                                                                                                                                                                                                                                                          ]
[+] EMBL CD133350             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TAATACGTGTAGAAATAATAGAAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTTCACTCAAGTTCCTTATCATCCAATGCCTACTTGATAACTAATGAGTAAATAATAGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTC                                                                              ]
[+] EMBL CD133391             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TAATACGTGTAGAAATAATAGAAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACACATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTTCACTCAAGTTCCTTATCATCCAATGCCTACTTGATAACTAATGAGTAAATAATAGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTC                                                                              ]
[-] EMBL CD141181             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ACANC TTACCATTCTCACNAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCAGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTTCACTCAAGTTCCTTATCATCCAATGCCTGCTTGATAACTAATGAGTAAATAATAGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTCTCTACCACCCCCCTCATTCAAGATTGTTAAACAAACAAACAAACATGCTTTTTCATTTTATTTGCATTTTCCCCCATT]




>consensus_9554#0
AATGCAATCCATCTTCGTTTCCTTTTACGCATCATTCAAATTCTCAGTCACTTTTACCTT
CTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAA
CTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATC
CTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTT
CATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCAC
TTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAA
TTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTC
TTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATA
CCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGG
TTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTC
ATATTCCCTATCGTGGTATGCTCAGTAATACGTGTAGAAATAATAGAAATAGTGATATTA
ATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCAT
TCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATA
ATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTG
TTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAG
GACATTTCACTCAAGTTCCTTATCATCCAATGCCTACTTGATAACTAATGAGTAAATAAT
AGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTCTCTACCACCCCC
CTCATTCAAGATTGTTAAACAAACAAACAAACATGCTTTTTCATTTTATTTGCATTTTCC
CCCATT

consensusID : consensus_9554#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [AGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTAGGAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATACCGGACAGAGTGTACTCAATC]

[-] EMBL CD133293             [AGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTAGGAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATACCGGACAGAGTGTACTCAATC]




>consensus_9554#1
AGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAA
ATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTA
AATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGAC
AATACTTCATCTCTTACACAATTAGGAGGTTCCTACTGTTCTGGAATTCAACAACAACCA
ACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAAT
CAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACT
GTTACCTCTACTCATATTCCCTATACCGGACAGAGTGTACTCAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9554#0      AATGCAATCCATCTTCGTTTCCTTTTACGCATCATTCAAATTCTCAGTCACTTTTACCTT 60
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      CTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAA 120
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      CTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATC 180
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      CTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTT 240
consensus_9554#1      -----------------------------------------------AGAGATGTTCTTT 13
                                                                     *************

consensus_9554#0      CATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCAC 300
consensus_9554#1      CATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCAC 73
                      ************************************************************

consensus_9554#0      TTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAA 360
consensus_9554#1      TTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAA 133
                      ************************************************************

consensus_9554#0      TTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTC 420
consensus_9554#1      TTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTC 193
                      ************************************************************

consensus_9554#0      TTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATA 480
consensus_9554#1      TTACACAATTAGGAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATA 253
                      ***********  ***********************************************

consensus_9554#0      CCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGG 540
consensus_9554#1      CCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGG 313
                      ************************************************************

consensus_9554#0      TTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTC 600
consensus_9554#1      TTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTC 373
                      ************************************************************

consensus_9554#0      ATATTCCCTATCGTGGTATGCTCAGTAATACGTGTAGAAATAATAGAAATAGTGATATTA 660
consensus_9554#1      ATATTCCCTATACCGG-ACAGAGTGTACTCAATC-------------------------- 406
                      ***********   ** *      *** *   *                           

consensus_9554#0      ATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCAT 720
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      TCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATA 780
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      ATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTG 840
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      TTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAG 900
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      GACATTTCACTCAAGTTCCTTATCATCCAATGCCTACTTGATAACTAATGAGTAAATAAT 960
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      AGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTCTCTACCACCCCC 1020
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      CTCATTCAAGATTGTTAAACAAACAAACAAACATGCTTTTTCATTTTATTTGCATTTTCC 1080
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      CCCATT 1086
consensus_9554#1      ------