These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1086 fasta sequence [AATGCAATCCATCTTCGTTTCCTTTTACGCATCATTCAAATTCTCAGTCACTTTTACCTTCTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAACTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATCCTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATCGTGGTATGCTCAGTAATACGTGTAGAAATAATAGAAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTTCACTCAAGTTCCTTATCATCCAATGCCTACTTGATAACTAATGAGTAAATAATAGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTCTCTACCACCCCCCTCATTCAAGATTGTTAAACAAACAAACAAACATGCTTTTTCATTTTATTTGCATTTTCCCCCATT] [+] EMBL AI977283 [AATGCAATCCATCTTCGTTTCCTTTTACGCATCATTCAAATTCTCAGTCACTTTTACCTTCTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAACTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATCCTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCT ] [+] EMBL CD162739 [ CTTCTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAACTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATCCTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTGATGTTGTTGACAATACTTCATCTCTTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCAT ] [+] EMBL CD162797 [ CTTCTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAACTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATCCTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAACTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAGTATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATC ] [-] EMBL CD110899 [ TGTTGTGACAAGTACAAGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTT ACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCAT ] [-] EMBL CD066902 [ TCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATCGTGGTATGCTCAGTAATACGTGTAGAAATAATAGCAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTT ] [+] EMBL CD139994 [ CTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATCCTGGTATGCTCAGTAATACGTGTAGAAATAATAGAAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTTATATTATTACCA TGTTCTGATAACC AAATAATTT ] [+] EMBL CD133350 [ TAATACGTGTAGAAATAATAGAAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTTCACTCAAGTTCCTTATCATCCAATGCCTACTTGATAACTAATGAGTAAATAATAGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTC ] [+] EMBL CD133391 [ TAATACGTGTAGAAATAATAGAAATAGTGATATTAATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCATTCTCAACAATAGTTGATACACATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTTCACTCAAGTTCCTTATCATCCAATGCCTACTTGATAACTAATGAGTAAATAATAGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTC ] [-] EMBL CD141181 [ ACANC TTACCATTCTCACNAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATAATTATTATTATTACCATTGTTCAGATAACCAAAATAATTTATCTCTACTAGATTCACCTGTTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAGGACATTTCACTCAAGTTCCTTATCATCCAATGCCTGCTTGATAACTAATGAGTAAATAATAGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTCTCTACCACCCCCCTCATTCAAGATTGTTAAACAAACAAACAAACATGCTTTTTCATTTTATTTGCATTTTCCCCCATT] consensusID : consensus_9554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [AGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTAGGAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATACCGGACAGAGTGTACTCAATC] [-] EMBL CD133293 [AGAGATGTTCTTTCATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCACTTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAATTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTCTTACACAATTAGGAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATACCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGGTTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTCATATTCCCTATACCGGACAGAGTGTACTCAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9554#0 AATGCAATCCATCTTCGTTTCCTTTTACGCATCATTCAAATTCTCAGTCACTTTTACCTT 60 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 CTGGAGTTAATCAGTTCATACCGGATATGATTAATAATAGTTCCTGTCAATCACTATCAA 120 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 CTACAATCAAGACAGATAGAGCCCACCATATAAATCAACAGTCATCCACTCCAGTTTATC 180 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 CTGTCTATTCAGGGAATTTTTCATTTCCTCTTGTTGTGACAAGTACAAGAGATGTTCTTT 240 consensus_9554#1 -----------------------------------------------AGAGATGTTCTTT 13 ************* consensus_9554#0 CATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCAC 300 consensus_9554#1 CATCAAATCTTCAATTATCAACATCAACCGGTTGTACAGCTTCACAAATTAATAATTCAC 73 ************************************************************ consensus_9554#0 TTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAA 360 consensus_9554#1 TTTTAGTAAAACCAGATTATTTTAATTATTCAGGTAATTGTAATTTAAATCAATCGTCAA 133 ************************************************************ consensus_9554#0 TTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTC 420 consensus_9554#1 TTCTTCCATGTACAGAAAGAAATGTACATTCATGTAATGTTGTTGACAATACTTCATCTC 193 ************************************************************ consensus_9554#0 TTACACAATTATCAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATA 480 consensus_9554#1 TTACACAATTAGGAGGTTCCTACTGTTCTGGAATTCAACAACAACCAACTTTTCAAAATA 253 *********** *********************************************** consensus_9554#0 CCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGG 540 consensus_9554#1 CCTCCTCTGATTTCTTATCGAATATTTCGTCAAATATAGGCTCAAATCAGTTTATCATGG 313 ************************************************************ consensus_9554#0 TTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTC 600 consensus_9554#1 TTAATACTGCTTCCACTACAGCTAATACTATTGTTGATGATATCACTGTTACCTCTACTC 373 ************************************************************ consensus_9554#0 ATATTCCCTATCGTGGTATGCTCAGTAATACGTGTAGAAATAATAGAAATAGTGATATTA 660 consensus_9554#1 ATATTCCCTATACCGG-ACAGAGTGTACTCAATC-------------------------- 406 *********** ** * *** * * consensus_9554#0 ATAGTAGTATAGGTAGGTTGTCACAACATGACATTCTACCTCCAGATACAACTTTACCAT 720 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 TCTCAACAATAGTTGATACATATCATCCGAAAAATGCTGTGTATAATTCTAACAATGATA 780 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 ATTATTATTATTACCATTGTTCTGATAACCAAAATAATTTATCTCTACTAGATTCACCTG 840 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 TTGTTATGCAATCTTCATCATTAGTTGGTTGGACTCCAAATGATCTAGTTAATAGAACAG 900 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 GACATTTCACTCAAGTTCCTTATCATCCAATGCCTACTTGATAACTAATGAGTAAATAAT 960 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 AGTAATTGTTTGTTTTCTTTTGTGCATCTTTTTTGTTTCAATTCTTTCTCTACCACCCCC 1020 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 CTCATTCAAGATTGTTAAACAAACAAACAAACATGCTTTTTCATTTTATTTGCATTTTCC 1080 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 CCCATT 1086 consensus_9554#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||