cluster # 9556

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Schistosoma mansoni
cluster # 9556 cluster # 9556 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9556#0 length = 764 sequences # 7

consensus_9556#1 length = 396 sequences # 3

consensusID : consensus_9556#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 764
fasta sequence

                              [TACCACCAAGAGGATTAACTAATGATGGCCTAGATCAGTTATGGGCTCATCCTAATCGTATACCGTTAGAAATATATGCTGACTTTGAAACTACACAACTTATTTTAACAAATCTGCATCATATGTTAGCC-TTATGGTTATATGGACAATCTCTTGCTGGCACGTCTGTTCAATCGTTTATTCAAGCTCCTATCGTATATGTACTGCCCAATGGACGTCCAACTAATATATCAACCTCGGATTCAGCTAACGGTCGACCATATTCTAAATCTAATCGACATAATACAGATCAACCTGATTATTGGACACTTGTGCCCGGTCGTCAAGATGCTTTTTTAAATTCTCTGAGACAACCATTTCATATACCATTGTTTCCTGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAGCAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTATCGCTAACCTACCTTTCCCACCACCGGTACGTCCACCTACCTAT]

[-] EMBL CD140770             [TACCACCAAGAGGATTAACTAATGATGGCCTAGATCAGTTATGGGCTCATCCTAATCGTATACCGTTAGAAATATATGCTGACTTTGAAACTACACAACTTATTTTAACAAATCTGCATCATATGTTAGCC TTATGGTTATATGGACAATCTCTTGCTGGCACGTCTGTTCAATCGTTTATTCAAGCTCCTATCGTATATGTACTGCCCAATGGACGTCCAACTAATATATCAACCTCGGATTCAGCTAACGGTCGACCATATTCTAAATCTAATCGACATAATACAGATCAACCTGATTATTGGACACTTATGCCCGGTCGTCAAGATGCTTTTTTAAATTCTCTGAGACAACCATTTCATATACCATTGTTTCCTGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTAT                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD199243             [                                                                                                                 CTGCATCATATG TAGCCNTTATGGTTATATGGACAATCTCTTGCTGGCACGTCTGTTCAATCGTTTATTCAAGCTCCTATCGTATATGTACTGCNCAATGGACGTCCAACTAATATATCAACCTCGGATTCAGCTAACGGTCGACCATATTCTAAATCTAATCGACATAATACAGATCAACCTGATTATTGGACACTTGTGCCCGGTCGTCAAGATGCTTTTTTAAATTCTCTGAGACAACCATTTCATATACCATTGTTTCCTGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCT                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD128054             [                                                                                                                                                                     gCTCTTCAATCGTTTATTCAAGCTCCTATCGTATATGTACTGCCCAATGGACGTCCAACTAATATATCAACCTCGGATTCAGCTAACGGTCGACCATATTCTAAATCTAATCGACATGATACAGATCAACCTGATTATTGGACACTTGTGCCCGGTCGTCAAGATGCTTTTTTAAATTCTCTGAGACAACCATTTCATATACCATTGTTTCCTGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATACTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAGCAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTATCGCTAACCTACCTTTCCCACCAC                    ]
[+] EMBL CD127072             [                                                                                                                                                                                                                                                                                                                                                                                ATTGTGAAATGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAACAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTATCGCTAACCTACCTTTCCCACCACCGGTACGTCCACCTACCTAT]
[+] EMBL CD128101             [                                                                                                                                                                                                                                                                                                                                                                                                         TTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAGCAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACG                                                ]
[+] EMBL CD095557             [                                                                                                                                                                                                                                                                                                                                                                                                                           GGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAGCAAATACTCAGGACAGACGATGACATCGGACCC                                                                                                                                                                                                             ]
[+] EMBL CD095565             [                                                                                                                                                                                                                                                                                                                                                                                                                                           CAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAGCAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCct                                                                                                                                                                             ]




>consensus_9556#0
TACCACCAAGAGGATTAACTAATGATGGCCTAGATCAGTTATGGGCTCATCCTAATCGTA
TACCGTTAGAAATATATGCTGACTTTGAAACTACACAACTTATTTTAACAAATCTGCATC
ATATGTTAGCCTTATGGTTATATGGACAATCTCTTGCTGGCACGTCTGTTCAATCGTTTA
TTCAAGCTCCTATCGTATATGTACTGCCCAATGGACGTCCAACTAATATATCAACCTCGG
ATTCAGCTAACGGTCGACCATATTCTAAATCTAATCGACATAATACAGATCAACCTGATT
ATTGGACACTTGTGCCCGGTCGTCAAGATGCTTTTTTAAATTCTCTGAGACAACCATTTC
ATATACCATTGTTTCCTGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTA
ACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTT
TCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAGCAAATACTCAGGAC
AGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGT
ATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAA
TAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTA
TCGCTAACCTACCTTTCCCACCACCGGTACGTCCACCTACCTAT

consensusID : consensus_9556#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 396
fasta sequence

                              [TNGNGNACATAGTAGGTCATTGTGAAATGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAACAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTATCGCTAACCTACCTTTCCCACCACC]

[+] EMBL CD127533             [TNGNGNACATAGTAGGTCATTGTGAAATGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAACAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTATCGCTAACCTACCTTTCCCACCAC ]
[-] EMBL CD127139             [                           TGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAACAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTATCGCTAACCTACCTTTCCCACCACC]
[+] EMBL CD095558             [                                                                                   CAATGCTCCCAGACCGTTCATACTGCACAATTCTCGCTCAGCCTTTTTTCTATCCTCGATATCCTTTGATCAATTGACATGGAATAGCCAATACCAAATACTCAGGACAGACGATGACAT AGAACCc                                                                                                                                                                                         ]




>consensus_9556#1
TNGNGNACATAGTAGGTCATTGTGAAATGGTGGTATTCCGAATTTTGGATCTTCTACTGC
AGGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGC
TCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAACAA
ATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACC
TCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACA
CAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGG
TTACACGTTTATCGCTAACCTACCTTTCCCACCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9556#0      TACCACCAAGAGGATTAACTAATGATGGCCTAGATCAGTTATGGGCTCATCCTAATCGTA 60
consensus_9556#1      ------------------------------------------------------------
                                                                                  

consensus_9556#0      TACCGTTAGAAATATATGCTGACTTTGAAACTACACAACTTATTTTAACAAATCTGCATC 120
consensus_9556#1      ------------------------------------------------------------
                                                                                  

consensus_9556#0      ATATGTTAGCCTTATGGTTATATGGACAATCTCTTGCTGGCACGTCTGTTCAATCGTTTA 180
consensus_9556#1      ------------------------------------------------------------
                                                                                  

consensus_9556#0      TTCAAGCTCCTATCGTATATGTACTGCCCAATGGACGTCCAACTAATATATCAACCTCGG 240
consensus_9556#1      ------------------------------------------------------------
                                                                                  

consensus_9556#0      ATTCAGCTAACGGTCGACCATATTCTAAATCTAATCGACATAATACAGATCAACCTGATT 300
consensus_9556#1      ------------------------------------------------------------
                                                                                  

consensus_9556#0      ATTGGACACTTGTGCCCGGTCGTCAAGATGCTTTTTTAAATTCTCTGAGACAACCATTTC 360
consensus_9556#1      -------------------------------------------------TNGNGNACATA 11
                                                                             *  * 

consensus_9556#0      ATATACCATTGTTTCCTGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTA 420
consensus_9556#1      GTAGGTCATTGTGAAATGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTA 71
                       **   ******    ********************************************

consensus_9556#0      ACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTT 480
consensus_9556#1      ACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTT 131
                      ************************************************************

consensus_9556#0      TCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAGCAAATACTCAGGAC 540
consensus_9556#1      TCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAACAAATACTCAGGAC 191
                      ********************************************* **************

consensus_9556#0      AGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGT 600
consensus_9556#1      AGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGT 251
                      ************************************************************

consensus_9556#0      ATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAA 660
consensus_9556#1      ATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAA 311
                      ************************************************************

consensus_9556#0      TAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTA 720
consensus_9556#1      TAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTA 371
                      ************************************************************

consensus_9556#0      TCGCTAACCTACCTTTCCCACCACCGGTACGTCCACCTACCTAT 764
consensus_9556#1      TCGCTAACCTACCTTTCCCACCACC------------------- 396
                      *************************