These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 764 fasta sequence [TACCACCAAGAGGATTAACTAATGATGGCCTAGATCAGTTATGGGCTCATCCTAATCGTATACCGTTAGAAATATATGCTGACTTTGAAACTACACAACTTATTTTAACAAATCTGCATCATATGTTAGCC-TTATGGTTATATGGACAATCTCTTGCTGGCACGTCTGTTCAATCGTTTATTCAAGCTCCTATCGTATATGTACTGCCCAATGGACGTCCAACTAATATATCAACCTCGGATTCAGCTAACGGTCGACCATATTCTAAATCTAATCGACATAATACAGATCAACCTGATTATTGGACACTTGTGCCCGGTCGTCAAGATGCTTTTTTAAATTCTCTGAGACAACCATTTCATATACCATTGTTTCCTGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAGCAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTATCGCTAACCTACCTTTCCCACCACCGGTACGTCCACCTACCTAT] [-] EMBL CD140770 [TACCACCAAGAGGATTAACTAATGATGGCCTAGATCAGTTATGGGCTCATCCTAATCGTATACCGTTAGAAATATATGCTGACTTTGAAACTACACAACTTATTTTAACAAATCTGCATCATATGTTAGCC TTATGGTTATATGGACAATCTCTTGCTGGCACGTCTGTTCAATCGTTTATTCAAGCTCCTATCGTATATGTACTGCCCAATGGACGTCCAACTAATATATCAACCTCGGATTCAGCTAACGGTCGACCATATTCTAAATCTAATCGACATAATACAGATCAACCTGATTATTGGACACTTATGCCCGGTCGTCAAGATGCTTTTTTAAATTCTCTGAGACAACCATTTCATATACCATTGTTTCCTGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTAT ] [-] EMBL CD199243 [ CTGCATCATATG TAGCCNTTATGGTTATATGGACAATCTCTTGCTGGCACGTCTGTTCAATCGTTTATTCAAGCTCCTATCGTATATGTACTGCNCAATGGACGTCCAACTAATATATCAACCTCGGATTCAGCTAACGGTCGACCATATTCTAAATCTAATCGACATAATACAGATCAACCTGATTATTGGACACTTGTGCCCGGTCGTCAAGATGCTTTTTTAAATTCTCTGAGACAACCATTTCATATACCATTGTTTCCTGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCT ] [+] EMBL CD128054 [ gCTCTTCAATCGTTTATTCAAGCTCCTATCGTATATGTACTGCCCAATGGACGTCCAACTAATATATCAACCTCGGATTCAGCTAACGGTCGACCATATTCTAAATCTAATCGACATGATACAGATCAACCTGATTATTGGACACTTGTGCCCGGTCGTCAAGATGCTTTTTTAAATTCTCTGAGACAACCATTTCATATACCATTGTTTCCTGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATACTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAGCAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTATCGCTAACCTACCTTTCCCACCAC ] [+] EMBL CD127072 [ ATTGTGAAATGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAACAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTATCGCTAACCTACCTTTCCCACCACCGGTACGTCCACCTACCTAT] [+] EMBL CD128101 [ TTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAGCAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACG ] [+] EMBL CD095557 [ GGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAGCAAATACTCAGGACAGACGATGACATCGGACCC ] [+] EMBL CD095565 [ CAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAGCAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCct ] consensusID : consensus_9556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 396 fasta sequence [TNGNGNACATAGTAGGTCATTGTGAAATGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAACAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTATCGCTAACCTACCTTTCCCACCACC] [+] EMBL CD127533 [TNGNGNACATAGTAGGTCATTGTGAAATGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAACAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTATCGCTAACCTACCTTTCCCACCAC ] [-] EMBL CD127139 [ TGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTAACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTTTCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAACAAATACTCAGGACAGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGTATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAATAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTATCGCTAACCTACCTTTCCCACCACC] [+] EMBL CD095558 [ CAATGCTCCCAGACCGTTCATACTGCACAATTCTCGCTCAGCCTTTTTTCTATCCTCGATATCCTTTGATCAATTGACATGGAATAGCCAATACCAAATACTCAGGACAGACGATGACAT AGAACCc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9556#0 TACCACCAAGAGGATTAACTAATGATGGCCTAGATCAGTTATGGGCTCATCCTAATCGTA 60 consensus_9556#1 ------------------------------------------------------------ consensus_9556#0 TACCGTTAGAAATATATGCTGACTTTGAAACTACACAACTTATTTTAACAAATCTGCATC 120 consensus_9556#1 ------------------------------------------------------------ consensus_9556#0 ATATGTTAGCCTTATGGTTATATGGACAATCTCTTGCTGGCACGTCTGTTCAATCGTTTA 180 consensus_9556#1 ------------------------------------------------------------ consensus_9556#0 TTCAAGCTCCTATCGTATATGTACTGCCCAATGGACGTCCAACTAATATATCAACCTCGG 240 consensus_9556#1 ------------------------------------------------------------ consensus_9556#0 ATTCAGCTAACGGTCGACCATATTCTAAATCTAATCGACATAATACAGATCAACCTGATT 300 consensus_9556#1 ------------------------------------------------------------ consensus_9556#0 ATTGGACACTTGTGCCCGGTCGTCAAGATGCTTTTTTAAATTCTCTGAGACAACCATTTC 360 consensus_9556#1 -------------------------------------------------TNGNGNACATA 11 * * consensus_9556#0 ATATACCATTGTTTCCTGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTA 420 consensus_9556#1 GTAGGTCATTGTGAAATGGTGGTATTCCGAATTTTGGATCTTCTACTGCAGGTGCCCCTA 71 ** ****** ******************************************** consensus_9556#0 ACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTT 480 consensus_9556#1 ACTATTCAACACCAATGCTCCCAGACCGTTCAAACTGCACAAATCTCGCTCAACCTTTTT 131 ************************************************************ consensus_9556#0 TCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAGCAAATACTCAGGAC 540 consensus_9556#1 TCTATCCTCGATATCCTTTGATCAATTGGCATGGAATAGCCAATAACAAATACTCAGGAC 191 ********************************************* ************** consensus_9556#0 AGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGT 600 consensus_9556#1 AGACGATGACATCAGACCCTACCACGACAAGGCCTGTGCGTATCGGACCTCCAACACTGT 251 ************************************************************ consensus_9556#0 ATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAA 660 consensus_9556#1 ATGGTTGTTGGCCGCGTGGACGTTTCAGTGATACAATAGATGACAAACACAATATTGAAA 311 ************************************************************ consensus_9556#0 TAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTA 720 consensus_9556#1 TAGATCAGTCCTGTTCACAATCTACACGATTTCCATCGGCTGGTCCTGGTTACACGTTTA 371 ************************************************************ consensus_9556#0 TCGCTAACCTACCTTTCCCACCACCGGTACGTCCACCTACCTAT 764 consensus_9556#1 TCGCTAACCTACCTTTCCCACCACC------------------- 396 ************************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||