These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1524 fasta sequence [AGTGACGGTACCAATGAATCCTCCTCGGTTTTTGTGCAGTGTTTGCAATGTTTGGTGTGACACTGAGAATGTCCTACGACTGCATGAAATGGGGAAAAAACATCGCTCTAAATGTCTTGTTCTAGACAGTTTAAACACAAGGGATCACATTGATTACCCTCTAAAAATTTCCTTACCAACACTGGTTACTCCTGATTCGGGCTCGCCGAGAGATTCACTTCTAGATACCAGCTCTTATTCTACGGGGACAGTGAGAAATTCAACCTGTGATCAAAAATCGCCTTTATATGTAGGTTTCATTGATTCTAGTTCAAATTGGACAAAGTCAAACGAGTTATCTTCAGCTTCTGAAATTTCTTTTAACTGCAACTTATGCGGTATACATTTGAATTCTTCCGATCAATATATATCTCATCTTCGTGGTCGCAAACATCAAAGTAAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCGATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTCCCCTCACTTACGTAAATTTAAAAGATCTTGTCGAGAGGTCTTAGTACCCGTATATGGATCAATCAAGTTCACATCTGCTGAGGCTAAGCTTTTGGAGAATTCAGCGAAAGGAGATCAAGATTGTGTTTTGTTGTTGGATTCATTTGACGGTCGAGATCGTATTGCAATACATCTGGCAAATGCACTACTGATAGCTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCCTACTTGGGTAGTATGGGTTTTACCCAAAATAGAAAAATCCTCAGCTAATTCGATTTCCA-TATTCGGATCCCAATCAGATAATAAAACTGATACATCTCAACGTCCTTTGAAAATTGCTTACTTACCTTGTGATACAAAATTATTACCACAAGTTGATTTGATATTTACAACCTCTGATTTGTTTGTTGAGCACTTATCAATTCTACTAATGAGACAAGCATTTATCTGTGGCATAATTATTCATGATGTCGGTCTAGCGTTAAAAAACGAAGAGTTTTGCAAGCTCCTTTACCGTTATCGTCAACATTTTACAAACCAAGCTAATCGAGGCCGAATTATATGTTTTGGTCAGATGAAAGTAGAAGATGACAGTGTATTTTCATCGTTCACGCAGTATGGTTAGAAGAAAAAAAAAGGACAAAATTCTTGAACAAATAAAATATACATAGAAATATATTATAACAGATTATTATAAATCATAAGAGAATAATTATTTGAACAATATAGATTTAAACCATTTTTTTTCATTTTGCTACTATTATCATTGAACAGATATATTTATTAATTACATTTATTTCCTATTTTCTTTTTTTTATTCGTTACCTAGAAAATAAAATAAAATTG] [+] EMBL CD082729 [AGTGACGGTACCAATGAATCCTCCTCGGTTTTTGTGCAGTGTTTGCAATGTTTGGTGTGACACTGAGAATGTCCTACGACTGCATGAAATGGGGAAAAAACATCGCTCTAAATGTCTTGTTCTAGACAGTTTAAACACAAGGGATCACATTGATTACCCTCTAAAAATTTCCTTACCAACACTGGTTACTCCTGATTCGGGCTCGCCGAGAGATTCACTTCTAGATACCAGCTCTTATTCTACGGGGACAGTGAGAAATTCAACCTGTGATCAAAAATCGCCTTTATATGTAGGTTTCATTGATTCTAGTTCAAATTGGACAAAGTCAAACGAGTTATCTTCAGCTTCTGAAATTTCTTTTAACTGCAACTTATGCGGTATACATTTGAATTCTTCCGATCAATATATATCTCATCTTCGTGGTCGCAAACATCAAAGTAAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCGATTGAAatg ] [+] EMBL CD182262 [ TTCTTTTAACTGCAACTTATGCGGTATATATTTGAATTCTTCCGATCAATATATATCTCATCTTCGTGGTCGCAAACATCAAAGTAAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGC ] [+] EMBL BG932455 [ ATATATATCTCATCTTCGTGGTCGCAAACATCAAAGTAAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACTCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCGATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTCCCCT ] [+] EMBL CD156821 [ AAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCGATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTCCCCTCACTTACGTAAATTTAAAAGATCTTGTCGAGAGGTCTTAGTACCCGTATATGGATCAATCAAGTTCACATCTGCTGAGGCTAAGCTTTTGGAGAATTCAGCGAAAGGAGATCAAGATTGTGTTTTGTTGTTGGATTCATTTGACGGTCGAGATCGTATTGCAATACATCTGGCAAATGCACTACTGATAGCTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCCTACTTGGGTAGTATGGGTTTTACCCAAAATAGAAAAATCCTCAGCTAATTCGATTTCCA TATTCGGATCCCAATCAGATAATAAAACTGATACATCTCAACGTCCTTTGAAAATTGCTTACTTACCTTGTGATACANAA ] [+] EMBL CD156819 [ AAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCGATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTCCCCTCACTTACGTAAATTTAAAAGATCTTGTCGAGAGGTCTTAGTACCCGTATATGGATCAATCAAGTTCACATCTGCTGAGGCTAAGCTTTTGGAGAATTCAGCGAAAGGAGATCAAGATTGTGTTTTGTTGTTGGATTCATTTGACGGTCGAGATCGTATTGCAATACATCTGGCAAATGCACTACTGATAGCTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCCTACTTGGGTAGTATGGGTTTTACCCAAAATAGAAAAATCCTCAGCTAATTCGATTTCCA TATTCGGATCCCAATCAGATAATANAACTGATACATCTCAACGTCCTTTGAAAATTGCTTACTTACCTTGTGATACA ] [+] EMBL CD157039 [ AAAATAAATGCTAATTCAGTTTCTAGTCTGTCTTCGAGCGATACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATATTTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCGATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTCCCCTCACTTACGTAAATTTAAAAGATCTTGTCGAGAGGTCTTAGTACCCGTATATGGATCAATCAAGTTCACATCTGCTGAGGCTAAGCTTTTGGAGAATTCGGCGAAAGGAGATCAAGATTGTGTTTTGTTGTTGGATTCATTTGACGGTCGAGATCGTATTGCAATACATCTGGCAAATGCACTACTGATAGCTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCCTACTTGGGTAGTATGGGTTTTACCCANAATAGAAAAATCCTCAGCTAATTCGATTTCCATTATTC GATCCCAAT ] [-] EMBL CD115792 [ TCGATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTCCCCTCACTTACGTAAATTTAAAAGATCTTGTCGAGAGGTCTTAGTACCCGTATATGGATCAATCAAGTTCACATCTGCTGAGGCTAAGCTTTTGGAGAATTCAGCGAAAGGAGATCAAGATTGTGTTTTGTTGTTGGATTCATTTGACGGTCGAGATCGTATTGCAATACATCTGGCAAATGCACTACTGATAGCTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCCTACTTGGGTAGTATGGGTTTTACCCAAAATAGAAAAATCCTCAGCTAATTCGATTTCCA TATTCGGATCCCAATCAGATAATAAAACTGATACtg ] [-] EMBL CD162385 [ CTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCCTACTTGGGTAGTATGGGTTTTACCCAAAATAGAAAAATCCTCAGCTAATTCGATTTCCA TATTCGGATCCCAATCAGATAATAAAACTGATACATCTCAACGTCCTTTGAAAATTGCTTACTTACCTTGTGTTACAAAATTATTACCACAAGTTGATTTGATATTTACAACCTCTGATTTGTTTGTTGAGCACTTATCAATTCTACTAATGAGACAAGCATTTATCTGTGGCATAATTATTCATGATGTCGGTCTAGCGTTAAAAAACGAAGAGTTTTGCAAGCTCCTTTAC ] [-] EMBL CD076320 [ TAATTCGATTTCCA TATTCGGATCCCAATCAGATAATAAAACTGATACATCTCAACGTCCTTTGAAAATTGCTTACTTACCTTGTGATACAAAATTATTACCACAAGTTGATTTGATATTTACAACCTCTGATTTGTTTGTTGAGCACTTATCAATTCTACTAATGAGACAAGCATTTATCTGTGGCATAATTATTCATGATGTCGGTCTAGCGTTAAAAAACGAAGAGTTTTGCAAGCTCCTTTACCGTTATCGTCAACATTTTACAAACCAAGCTAATCGAGGCCGAATTATATGTTTTGGTCAGATGAAAGTAGAAGATGACAGTGTATTTTCATCGTTCACGCAGTATGGTTAGAAGAAAAAAAAAGGACAAAATTCTTGAACAAATAAAATATACATAGAAATATATTATAACAGATTATTATAAATCATAAGAGAATAATTATTTGAACAATATAGATTTAAACCATTTTTTTTCATTTTGCTACTATTATCATTGAACAGATATATTTATTAATTACATTTATTTCCTATTTTCTTTTTTTTATTCGTTACCTAGAAAATAAAATAAAATTG] consensusID : consensus_9557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence [GGGGACGATAACGGTAAGGGAGCTTGCAAAACTCTTCGTTTTTTAACGCTGGACCGACATCATGAATAATTATGCCACAGATAAATGCTTGGTTTGTAAAATGCTGACGATAACGGTAAAGGAGCTT] [+] EMBL CD092520 [GGGGACGATAACGGTAAGGGAGCTTGCAAAACTCTTCGTTTTTTAACGCTGGACCGACATCATGAATAATTATGCCACAGATAAATGCTTGGTTTGTAAAATGCTGACGATAACGGTAAAGGAGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9557#0 AGTGACGGTACCAATGAATCCTCCTCGGTTTTTGTGCAGTGTTTGCAATGTTTGGTGTGA 60 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 CACTGAGAATGTCCTACGACTGCATGAAATGGGGAAAAAACATCGCTCTAAATGTCTTGT 120 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 TCTAGACAGTTTAAACACAAGGGATCACATTGATTACCCTCTAAAAATTTCCTTACCAAC 180 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 ACTGGTTACTCCTGATTCGGGCTCGCCGAGAGATTCACTTCTAGATACCAGCTCTTATTC 240 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 TACGGGGACAGTGAGAAATTCAACCTGTGATCAAAAATCGCCTTTATATGTAGGTTTCAT 300 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 TGATTCTAGTTCAAATTGGACAAAGTCAAACGAGTTATCTTCAGCTTCTGAAATTTCTTT 360 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 TAACTGCAACTTATGCGGTATACATTTGAATTCTTCCGATCAATATATATCTCATCTTCG 420 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 TGGTCGCAAACATCAAAGTAAAATAAATGTTAATTCAGTTTCTAGTCTGTCTTCGAGCGA 480 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 TACAGCAATGTCACCATCAAGTGATGAAAACCCAACATCTGTTTTTTATCATTGCAATAT 540 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 TTGTCAGTTTGTAATATTCAATTCAATGAAACTGAAACATTTGGAGTCAGAAGAGCATCG 600 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 ATTGAATGTTCGCAGGTTAAAAGGAAAATCACTATCACCAGGTCCACGCGTAGACAACTC 660 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 CCCTCACTTACGTAAATTTAAAAGATCTTGTCGAGAGGTCTTAGTACCCGTATATGGATC 720 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 AATCAAGTTCACATCTGCTGAGGCTAAGCTTTTGGAGAATTCAGCGAAAGGAGATCAAGA 780 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 TTGTGTTTTGTTGTTGGATTCATTTGACGGTCGAGATCGTATTGCAATACATCTGGCAAA 840 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 TGCACTACTGATAGCTAATAAAAATCTATCAACTATTGATCCGTCAAGTCCCTCTACTCC 900 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 TACTTGGGTAGTATGGGTTTTACCCAAAATAGAAAAATCCTCAGCTAATTCGATTTCCAT 960 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 ATTCGGATCCCAATCAGATAATAAAACTGATACATCTCAACGTCCTTTGAAAATTGCTTA 1020 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 CTTACCTTGTGATACAAAATTATTACCACAAGTTGATTTGATATTTACAACCTCTGATTT 1080 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 GTTTGTTGAGCACTTATCAATTCTACTAATGAGACAAGCATTTATCTGTGGCATAATTAT 1140 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 TCATGATGTCGGTCTAGCGTTAAAAAACGAAGAGTTTTGCAAGCTCCTTTACCGTTATCG 1200 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 TCAACATTTTACAAACCAAGCTAATCGAGGCCGAATTATATGTTTTGGTCAGATGAAAGT 1260 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 AGAAGATGACAGTGTATTTTCATCGTTCACGCAGTATGGTTAGAAGAAAAAAAAAGGACA 1320 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 AAATTCTTGAACAAATAAAATATACATAGAAATATATTATAACAGATTATTATAAATCAT 1380 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 AAGAGAATAATTATTTGAACAATATAGATTTAAACCATTTTTTTTCATTTTGCTACTATT 1440 consensus_9557#1 ----------------GGGGACGATAACGGTAAGGGAGCTTGCAAAACTCTTCGTTTTTT 44 * * *** *** * ** * * * * * ** consensus_9557#0 ATCATTGAACAGATATATTTATTAATTACATTTATTTCCTATTTTCTTTTTTTTATTCGT 1500 consensus_9557#1 AACGCTGGACCGACATCATGAATAATTATGCCACAGATAAATGCTTGGTTTGTAAAATGC 104 * * ** ** ** ** * * ****** ** * *** * * * consensus_9557#0 TACCTAGAAAATAAAATAAAATTG 1524 consensus_9557#1 TGACGATAACGGTAAAGGAGCTT- 127 * * * ** *** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||