cluster # 9559

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Schistosoma mansoni
cluster # 9559 cluster # 9559 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9559#0 length = 1247 sequences # 8

consensus_9559#1 length = 544 sequences # 1
consensus_9559#2 length = 476 sequences # 1

consensusID : consensus_9559#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1247
fasta sequence

                              [GGCCAGAATTCGGCACGAGGCCGACATCTTGTTCGTTAGCAATCTGGCCGTGAAAGCCGGCAAGATGATTGAGGCTGGCTTCTCAAAGAGTATTCCCTATGACAAAAAAGAATCATATGCTGACTTGGTAACTGAAGTGGATAAAGCTGTTGAGAATTATATCTGTCAGGAAATCCTTGCGTCGTTCCCTACTCACAAAATTATTGCAGAGGAAGGATATTCTGGGAATGCGGAGCTTACTTGTTCGCCTACATGGATAATCGACCCGATTGATGGAACTTCGAACTTTGTTAGCAGGTTCCCTTTTGTTTGCGTTTCAATTGCTTACTATGTTAACAAGGAGCCCGAGCTAGCTGTTGTTTATAATCCGATATTGAAATGGCTATTTCATGGAATTCGTAATCAAGGAGCATTTCTGAATGACAAACAAATTCATACATCAAAACTTCAGGATCTGTCTCAGGCTTTGGTTTTGACCGACTGGGGAGGTGACCGAAATCCAAGTGTTTTAGATATAAAGTCAAACAACATTCGCCAAATAATATCGAAAGCTCGCGGTGTGCGCACTATGGGTTCCGCAGCCTTGCATATGTGTCAGATTGCTGCAGGTAATGGTGATATATTTTTCGAATTTGGAATTCACTGTTGGGACTATGCCGCAGCTGTATTAATTGTTCGTGAAGCAGGAGGTTTTTGTTGTAATTTTGACGGTAAACCTGTAGATTTAATGGCAAGAAATGTTATATGTGCGGGAACTCCAGAACTAGCTAACGCTCTTATTCCTCTTATTCAACCAGTTGGTTACGCGAGAGACTGATAAAAGAAGCAGAATCACATAAATATATCTATTAAGGGAAAAAGAACCAGAGACAATCAAAATTTAGAAGTTTTCATTCATTTGTTGATTCTTTTAATATGTTGGTTAGTTTTTTCCATGTATTTATATACGTTCAGAAAGGTGCAATGAAAGTTGTACCTTTGATTTTAGAAATGCCGTTGTGATTCCTTCCCTAC-TTCTTCAA-TGCAGCATTTATCTTCA-CTTGTATGTGTGTGTCTAATTA-TCTAGTGAGTGTTTATCGAAAAAAAGAAATATGTGCATAGATTAAAAAAACTTAAAGAGCTGTTATATTATAATAATTAGTAGTATTTAGTTTTAAATGTTTTTTCCACTTTCCTTTCTACTAAAGTATGATTATTTTTTTCTCACGGCTCAGAAGTTGGTTACTATTTTCATA-TGATATACTCCT]

[+] EMBL CD079960             [GGCCAGAATTCGGCACGAGGCCGACATCTTGTTCGTTAGCAATCTGGCCGTGAAAGCCGGCAAGATGATTGAGGCTGGCTTCTCAAAGAGTATTCCCTATGACAAAAAAGAATCATATGCTGACTTGGTAACTGAAGTGGATAAAGCTGTTGAGAATTATATCTGTCAGGAAATCCTTGCGTCGTTCCCTACTCACAAAATTATTGCAGAGGAAGGATATTCTGGGAATGCGGAGCTTACTTGTTCGCCTACATGGATAATCGACCCGATTGATGGAACTTCGAACTTTGTTAGCAGGTTCCCTTTTGTTTGCGTTTCAATTGCTTACTATGTTAACAAGGAGCCCGAGCTAGCTGTTGTTTATAATCCGATATTGAAATGGCTATTTCATGGAATTCGTAATCAAGGAGCATTTCTGAATGACAAACAAATTCATACATCAAAACTTCAGGATCTGTCTCAGGCTTTGGTTTTGACCGACTGGGGAGGTGACCGAAATCCAAGTGTTTTAGATATAAAGTCAAACAACATTCGCCAAATAATATCGAAAGCTCGCGGTGTGCGCACTATGGGTTCCGCAGCCTTGCATATGTGTCAGATTGCTGCAGGTAATGGTGATATATTTTTCGAATTTGGAATTCACTGTTGGGACTATGCCGCAGCTGTATTAATTGTTCGTGAAGCANGAGGGTTTTt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD139426             [                                                                                                                                         TGGATAAAGCTGTTGAGAATTATATCTGTCAGGAAATCCTTGCGTCGTTCCCTACTCACAAAATTATTGCAGAGGAAGGATATTCTGGGAATGCGGAGCTTACTTGTTCGCCTACATGGATAATCGACCCGATTGATGGAACTTCGAACTTTGTTAGCAGGTTCCCTTTTGTTTGCGTTTCAATTGCTTACTATGTTAACAAGGAGCCCGAGCTAGCTGTTGTTTATAATCCGATATTGAAATGGCTATTTCATGGAATTCGTAATCAAGGAGCATTTCTGAATGACAAACAAATTCATACATCAAAACTTCAGGATCTGTCTCAGGCTTTGGTTTTGACCGACTGGGGAGGTGACCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD082491             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATCAAAACTTCAGGATCTGTCTCAGGCTTTGGTTTTGACCGACTGGGGAGGTGACCGAAATCCAAGTGTTTTAGATATAAAGTCAAACAACATTCGCCAAATAATATCGAAAGCTCGCGGTGTGCGCACTATGGGTTCCGCAGCCTTGCATATGTGTCAGATTGCTGCAGGTAATGGTGATATATTTTTCGAATTTGGAATTCACTGTTGGGACTATGCCGCAGCTGTATTAATTGTTCGTGAAGCAGGAGGTTTTTGTTGTAATTTTGACGGTAAACCTGTAGATTTAATGGCAAGAAATGTTATATGTGCGGGAACTCCAGAACTAGCTAACGCTCTTATTCCTCTTATTCAACCAGTTGGTTACGCGAGAGACTGATAAAAGAAGCAGAATCACATAAATATATCTATTAAGGGAAAAAGAACCAGAGACAATCAAAATTTAGAAGTTTTCATTCATTTGTTGATTCTTTTAATATGTTGGTTAGTTTTTTCCATGTATTTATATACGTTCAGAAAGGTGCAATGAAAGTTGTACCTTTGATTNTAGAAATGCCGTTGTGATTCCTTCCCTAC TTCTTCAA TGCAGCATTTATCTTCA CTTGTATGTGTGTGTCTAATTA TCTAGTGAGTGGTTATCGAANAAAAG AATATGTGCATAGATTAAAAAAACTT AAGAGCTGNTATATTATAATAATTAGTAGTATTTAGTTNTAAATGGTTTTTCCACTTTCCTTTCTACNTAAGTATGA TATTNNTTTCT ACGGCTCAGAAAGTGG TACTANTTTCATA TGATATACT   ]
[-] EMBL CD074872             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CGACTGGGGAGGTGACCGAAATCCAAGTGTTTTAGATATAAAGTCAAACAACATTCGCCAAATAATATCGAAAGCTCGCGGTGTGCGCACTATGGGTTCCGCAGCCTTGCATATGTGTCAGATTGCTGCAGGTAATGGTGATATATTTTTCGAATTTGGAATTCACTGTTGGGACTATGCCGCAGCTGTATTAATTGTTCGTGAAGCAGGAGGTTTTTGTTGTAATTTTGACGGTAAACCTGTAGATTTAATGGCAAGAAATGTTATATGTGCGGGAACTCCAGAACTAGCTAACGCTCTTATTCCTCTTATTCAACCAGTTGGTTACGCGAGAGACTGATAAAAGAAGCAGAATCACATAAATATATCTATTAAGGGAAAAAGAACCAGAGACAATCAAAATTTAGAAGTTTTCATTCATTTGTTGATTCTTTTAATATGTTGGTTAGTTTTTTCCATGTATTTATATACGTTCAGAAAGGTGCAATGAAAGTTGTACCTTTGATTTTAGAAATGCCGTTGTGATTCCTTCCCTAC TTCTTCAA TGCAGCATTTATCTTCA CTTGTATGTGTGTGTCTAATTA TCTAGTGAG                                                                                                                                                                                  ]
[-] EMBL CD074154             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTCGCCAAATAATATCGAAAGCTCGCGGTGTGCGCACTATGGGTTCCGCAGCCTTGCATATGTGTCAGATTGCTGCAGGTAATGGTGATATATTTTTCGAATTTGGAATTCACTGTTGGGACTATGCCGCAGCTGTATTAATTGTTCGTGAAGCAGGAGGTTTTTGTTGTAATTTTGACGGTAAACCTGTAGATTTAATGGCAAGAAATGTTATATGTGCGGGAACTCCAGAACTAGCTAACGCTCTTATTCCTCTTATTCAACCAGTTGGTTACGCGAGAGACTGATAAAAGAAGCAGAATCACATAAATATATCTATTAAGGGAAAAAGAACCAGAGACAATCAAAATTTAGAAGTTTTCATTCATTTGTTGATTCTTTTAATATGTTGGTTAGTTTTTTCCATGTATTTATATACGTTCAGAAAGGTGCAATGAAAGTTGTACCTTTGATTTTAGAAATGCCGTTGTGATTCCTTCCCTAC TTCTTCAA TGCAGCATTTATCTTCA CTTGTATGTGTGTGTCTAATTA TCTAGTGAGTGTTTATCGAAAAAAAGAAATATGTGCATAGATTAAAAAAACTTAAAGAGCTGTTATATTATAATAATTAGTAGTATTTAGTTTTAAATGTTTTTTCCACTTTCCTTTCTACTAAAGTATGATTATTTTTTTCTCACGGCTCAGAAGTTGGTTACCATTCTGATg ttggag      ]
[+] EMBL CD133742             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTTTTCGAATTTGGAATTCACTGTTGGGACTATGCCGCAGCTGTATTAATTGTTCGTGAAGCAGGAGGTTTTTGTTGTAATTTTGACGGTAAACCTGTAGATTTAATGGCAAGAAATGTTATTTTTGCGGGAACTCCACAACTAGCTAACGCTCTTATTCCTCTTATTCAACCAGTTGGTTACGCGAGAGACTGATAAAACAAGCACAATCACATAAATATATCTATTAAGGGAAAAAGAACCAGAGACAATCAAAATTTAGAAGTTTTCATTCATTTGTTGATTCTTTTAATATGTCGGTTAGCCTTCTCCATGTATCTATATACGTTCAGAAAGGTGCAATGAAAGCTGCACCTTTGATTTTAAAAATGCTGTTGTGATTCCTTCTCTACTTTCTTCAATTGCACCATCTATCTTCACCTTGTATGTGTGTGTCTAACTACTCTAATGAG                                                                                                                                                                                  ]
[+] EMBL CD185591             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTTTTCGAATTTGGAATTCACTGTTGGGACTATGCCGCAGCTGTATTAATTGTTCGTGAAGCAGGAGGTTTTTGTTGTAATTTTGACGGTAAACCTGTAGATTTAATGGCAAGAAATGTTATATGTGCGGGAACTCCAGAACTAGCTAACGCTCTTATTCCTCTTATTCAACCAGTTGGTTACGCGAGAGACTGATAAAAGAAGCAGAATCACATAAATATATCTATTAAGGGAAAAAGAACCAGAGACAATCAAAATTTAGAAGTTTTCATTCATTTGTTGATTCTTTTAATATGTTGGTTAGTTTTTTCCATGTATTTATATACGTTCAGAAAGGTGCAATGAAAGTTGTACCTTTGATTTTAGAAATGCCGTTGTGATTCCTTCCCTAC TTCTTCAA TGCAGCATTTATCTTCA CTTGTATGTGTGTGTCTAATTA TCTAGTGAG                                                                                                                                                                                  ]
[-] EMBL CD076088             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCCGCAGCTGTATTAATTGTTCGTGAAGCAGGAGGTTTTTGTTGTAATTTTGACGGTAAACCTGTAGATTTAATGGCAAGAAATGTTATATGTGCGGGAACTCCAGAACTAGCTAACGCTCTTATTCCTCTTATTCAACCAGTTGGTTACGCGAGAGACTGATAAAAGAAGCAGAATCACATAAATATATCTATTAAGGGAAAAAGAACCAGAGACAATCAAAATTTAGAAGTTTTCATTCATTTGTTGATTCTTTTAATATGTTGGTTAGTTTTTTCCATGTATTTATATACGTTCAGAAAGGTGCAATGAAAGTTGTACCTTTGATTTTAGAAATGCCGTTGTGATTCCTTCCCTAC TTCTTCAA TGCAGCATTTATCTTCA CTTGTATGTGTGTGTCTAATTA TCTAGTGAGTGTTTATCGAAAAAAAGAAATATGTGCATAGATTAAAAAAACTTAAAGAGCTGTTATATTATAATAATTAGTAGTATTTAGTTTTAAATGTTTTTTCCACTTTCCTTTCTACTAAAGTATGATTATTTTTTTCTCACGGCTCAGAAGTTGGTTACTATTTTCATATTGATATACTCCT]




>consensus_9559#0
GGCCAGAATTCGGCACGAGGCCGACATCTTGTTCGTTAGCAATCTGGCCGTGAAAGCCGG
CAAGATGATTGAGGCTGGCTTCTCAAAGAGTATTCCCTATGACAAAAAAGAATCATATGC
TGACTTGGTAACTGAAGTGGATAAAGCTGTTGAGAATTATATCTGTCAGGAAATCCTTGC
GTCGTTCCCTACTCACAAAATTATTGCAGAGGAAGGATATTCTGGGAATGCGGAGCTTAC
TTGTTCGCCTACATGGATAATCGACCCGATTGATGGAACTTCGAACTTTGTTAGCAGGTT
CCCTTTTGTTTGCGTTTCAATTGCTTACTATGTTAACAAGGAGCCCGAGCTAGCTGTTGT
TTATAATCCGATATTGAAATGGCTATTTCATGGAATTCGTAATCAAGGAGCATTTCTGAA
TGACAAACAAATTCATACATCAAAACTTCAGGATCTGTCTCAGGCTTTGGTTTTGACCGA
CTGGGGAGGTGACCGAAATCCAAGTGTTTTAGATATAAAGTCAAACAACATTCGCCAAAT
AATATCGAAAGCTCGCGGTGTGCGCACTATGGGTTCCGCAGCCTTGCATATGTGTCAGAT
TGCTGCAGGTAATGGTGATATATTTTTCGAATTTGGAATTCACTGTTGGGACTATGCCGC
AGCTGTATTAATTGTTCGTGAAGCAGGAGGTTTTTGTTGTAATTTTGACGGTAAACCTGT
AGATTTAATGGCAAGAAATGTTATATGTGCGGGAACTCCAGAACTAGCTAACGCTCTTAT
TCCTCTTATTCAACCAGTTGGTTACGCGAGAGACTGATAAAAGAAGCAGAATCACATAAA
TATATCTATTAAGGGAAAAAGAACCAGAGACAATCAAAATTTAGAAGTTTTCATTCATTT
GTTGATTCTTTTAATATGTTGGTTAGTTTTTTCCATGTATTTATATACGTTCAGAAAGGT
GCAATGAAAGTTGTACCTTTGATTTTAGAAATGCCGTTGTGATTCCTTCCCTACTTCTTC
AATGCAGCATTTATCTTCACTTGTATGTGTGTGTCTAATTATCTAGTGAGTGTTTATCGA
AAAAAAGAAATATGTGCATAGATTAAAAAAACTTAAAGAGCTGTTATATTATAATAATTA
GTAGTATTTAGTTTTAAATGTTTTTTCCACTTTCCTTTCTACTAAAGTATGATTATTTTT
TTCTCACGGCTCAGAAGTTGGTTACTATTTTCATATGATATACTCCT

consensusID : consensus_9559#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence

                              [GAGGCCGACTGGGGAGGTGACCGAAATCCAAGTGTTTTAGATATAAAGTCAAACAACATTCGCCAAATAATATCGAAAGCTCGCGGTGTGCGCACTATGGGTTCCGCAGCCTTNNNNNNNNNNNNNNNNNNNNNNNNTAATGGTGATATATTTTTCGAATTTGGAATTCACTGTTGGGACTATGCCGCAGCTGTATTAATTGTTCGTGAAGCAGGAGGTTTTTGTTGTAATTTTGACGGTAAACCTGTAGATTTAATGGCTCCAGAACTAGCTAACGCTCTTATTCCTCTTATTCAACCAGTTGGTTACGCGAGAGACTGATAAAAGAAGCAGAATCACATAAATATATCTATTAAGGGAAAAAGAACCAGAGACAATCAAAATTTAGNNNNNNNNNNNNNNNNNNNNNNNCTTTTAATATGTTGGTTAGTTTTTTCCATGTATTTATATACGTTCAGAAAGGTGCAATGAAAGTTGTACCTTTGATTTTAGAAATGCCGTTGTGATTCCTTCCCTACTTCTTCAATGCAGCATTTATCTTCAC]

[+] EMBL CD081044             [GAGGCCGACTGGGGAGGTGACCGAAATCCAAGTGTTTTAGATATAAAGTCAAACAACATTCGCCAAATAATATCGAAAGCTCGCGGTGTGCGCACTATGGGTTCCGCAGCCTTNNNNNNNNNNNNNNNNNNNNNNNNTAATGGTGATATATTTTTCGAATTTGGAATTCACTGTTGGGACTATGCCGCAGCTGTATTAATTGTTCGTGAAGCAGGAGGTTTTTGTTGTAATTTTGACGGTAAACCTGTAGATTTAATGGCTCCAGAACTAGCTAACGCTCTTATTCCTCTTATTCAACCAGTTGGTTACGCGAGAGACTGATAAAAGAAGCAGAATCACATAAATATATCTATTAAGGGAAAAAGAACCAGAGACAATCAAAATTTAGNNNNNNNNNNNNNNNNNNNNNNNCTTTTAATATGTTGGTTAGTTTTTTCCATGTATTTATATACGTTCAGAAAGGTGCAATGAAAGTTGTACCTTTGATTTTAGAAATGCCGTTGTGATTCCTTCCCTACTTCTTCAATGCAGCATTTATCTTCAC]




>consensus_9559#1
GAGGCCGACTGGGGAGGTGACCGAAATCCAAGTGTTTTAGATATAAAGTCAAACAACATT
CGCCAAATAATATCGAAAGCTCGCGGTGTGCGCACTATGGGTTCCGCAGCCTTNNNNNNN
NNNNNNNNNNNNNNNNNTAATGGTGATATATTTTTCGAATTTGGAATTCACTGTTGGGAC
TATGCCGCAGCTGTATTAATTGTTCGTGAAGCAGGAGGTTTTTGTTGTAATTTTGACGGT
AAACCTGTAGATTTAATGGCTCCAGAACTAGCTAACGCTCTTATTCCTCTTATTCAACCA
GTTGGTTACGCGAGAGACTGATAAAAGAAGCAGAATCACATAAATATATCTATTAAGGGA
AAAAGAACCAGAGACAATCAAAATTTAGNNNNNNNNNNNNNNNNNNNNNNNCTTTTAATA
TGTTGGTTAGTTTTTTCCATGTATTTATATACGTTCAGAAAGGTGCAATGAAAGTTGTAC
CTTTGATTTTAGAAATGCCGTTGTGATTCCTTCCCTACTTCTTCAATGCAGCATTTATCT
TCAC

consensusID : consensus_9559#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence

                              [CGTTATCACTTTTTCAGATTCACAGCCCGAGCTAGCTGTTGTTTATAATCCGATATTGAAATGGCTATTTCATGGAATTCGTAATCAAGGAGCATTTCTGAATGACAAACAAATTCATACATCAAAACTTCAGGGCTTCTTTTTTTAGATCTGTCTCAGGCTTTGGTTTTGACCGACTGGGGAGGTGACCGAAATCCAAGTGTTTTAGATATAAAGTCAAACAACATTCGCCAAATAATATCGAAAGCTCGCGGGTAAGCCGTTCATCTTTCGATGAATTGTATTAATATTTGGTCATTTTTCACTGTGGCGTGACTATAACTTATGGACGAACCACTAAGATTCAGGATATCAGGTCTCGGATTTTGGCGCGAGTTTCATACACCCATTTGTATCAATAACGTTCTTGCATTTTAGCTGATGCCAGATCGTGATAAATACCATAAGTCGAATCCCTATCCCTAACCACCAATTGT]

[-] EMBL CD168153             [CGTTATCACTTTTTCAGATTCACAGCCCGAGCTAGCTGTTGTTTATAATCCGATATTGAAATGGCTATTTCATGGAATTCGTAATCAAGGAGCATTTCTGAATGACAAACAAATTCATACATCAAAACTTCAGGGCTTCTTTTTTTAGATCTGTCTCAGGCTTTGGTTTTGACCGACTGGGGAGGTGACCGAAATCCAAGTGTTTTAGATATAAAGTCAAACAACATTCGCCAAATAATATCGAAAGCTCGCGGGTAAGCCGTTCATCTTTCGATGAATTGTATTAATATTTGGTCATTTTTCACTGTGGCGTGACTATAACTTATGGACGAACCACTAAGATTCAGGATATCAGGTCTCGGATTTTGGCGCGAGTTTCATACACCCATTTGTATCAATAACGTTCTTGCATTTTAGCTGATGCCAGATCGTGATAAATACCATAAGTCGAATCCCTATCCCTAACCACCAATTGT]




>consensus_9559#2
CGTTATCACTTTTTCAGATTCACAGCCCGAGCTAGCTGTTGTTTATAATCCGATATTGAA
ATGGCTATTTCATGGAATTCGTAATCAAGGAGCATTTCTGAATGACAAACAAATTCATAC
ATCAAAACTTCAGGGCTTCTTTTTTTAGATCTGTCTCAGGCTTTGGTTTTGACCGACTGG
GGAGGTGACCGAAATCCAAGTGTTTTAGATATAAAGTCAAACAACATTCGCCAAATAATA
TCGAAAGCTCGCGGGTAAGCCGTTCATCTTTCGATGAATTGTATTAATATTTGGTCATTT
TTCACTGTGGCGTGACTATAACTTATGGACGAACCACTAAGATTCAGGATATCAGGTCTC
GGATTTTGGCGCGAGTTTCATACACCCATTTGTATCAATAACGTTCTTGCATTTTAGCTG
ATGCCAGATCGTGATAAATACCATAAGTCGAATCCCTATCCCTAACCACCAATTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9559#0      GGCCAGAATTCGGCACGAGGCCGACATCTTGTTCGTTAGCAATCTGGCCGTGAAAGCCGG 60
consensus_9559#1      ------------------------------------------------------------
consensus_9559#2      ------------------------------------------------------------
                                                                                  

consensus_9559#0      CAAGATGATTGAGGCTGGCTTCTCAAAGAGTATTCCCTATGACAAAAAAGAATCATATGC 120
consensus_9559#1      ------------------------------------------------------------
consensus_9559#2      ------------------------------------------------------------
                                                                                  

consensus_9559#0      TGACTTGGTAACTGAAGTGGATAAAGCTGTTGAGAATTATATCTGTCAGGAAATCCTTGC 180
consensus_9559#1      ------------------------------------------------------------
consensus_9559#2      ------------------------------------------------------------
                                                                                  

consensus_9559#0      GTCGTTCCCTACTCACAAAATTATTGCAGAGGAAGGATATTCTGGGAATGCGGAGCTTAC 240
consensus_9559#1      ------------------------------------------------------------
consensus_9559#2      ------------------------------------------------------------
                                                                                  

consensus_9559#0      TTGTTCGCCTACATGGATAATCGACCCGATTGATGGAACTTCGAACTTTGTTAGCAGGTT 300
consensus_9559#1      ------------------------------------------------------------
consensus_9559#2      ------------------------------------------------------------
                                                                                  

consensus_9559#0      CCCTTTTGTTTGCGTTTCAATTGCTTACTATGTTAACAAGGAGCCCGAGCTAGCTGTTGT 360
consensus_9559#1      ------------------------------------------------------------
consensus_9559#2      ------------------------------------------------------------
                                                                                  

consensus_9559#0      TTATAATCCGATATTGAAATGGCTATTTCATGGAATTCGTAATCAAGGAGCATTTCTGAA 420
consensus_9559#1      ------------------------------------------------------------
consensus_9559#2      ------------------------------------------------------------
                                                                                  

consensus_9559#0      TGACAAACAAATTCATACATCAAAACTTCAGGATCTGTCTCAGGCTTTGGTTTTGACCGA 480
consensus_9559#1      ----------------------------------------------------GAGGCCGA 8
consensus_9559#2      ------------------------------------------------------------
                                                                                  

consensus_9559#0      CTGGGGAGGTGACCGAAATCCAAGTGTTTTAGATATAAAGTCAAACAACATTCGCCAAAT 540
consensus_9559#1      CTGGGGAGGTGACCGAAATCCAAGTGTTTTAGATATAAAGTCAAACAACATTCGCCAAAT 68
consensus_9559#2      -------------CGTTATC--ACTTTTTCAGATTCACAGCCCGA-GCTAGCTGTTGTTT 44
                                   **  ***  * * *** ****  * ** *  *    *   *     *

consensus_9559#0      AATATCGAAAGCTCGCGGTGTGCGCACTATGGGTTCCGCAGCCTTGCATATGTGTCAGAT 600
consensus_9559#1      AATATCGAAAGCTCGCGGTGTGCGCACTATGGGTTCCGCAGCCTTNNNNNNNNNNNNNNN 128
consensus_9559#2      ATAATCCGATA-TTGAAATGGCTATTTCATGGAATTCG------TAATCAAGGAGCATTT 97
                      *  ***  *   * *   **        ****  * **      *               

consensus_9559#0      TGCTGCAGGTAATGGTGATATATTTTTCGAATTTGGAATTCACTGTTGGGACTATGCCGC 660
consensus_9559#1      NNNNNNNNNTAATGGTGATATATTTTTCGAATTTGGAATTCACTGTTGGGACTATGCCGC 188
consensus_9559#2      CTGAATGACAAACAAATTCATACATCAAAACTTCAGGGCTTCTTTTTTTAGATCTGTCTC 157
                                **       ***  *    * **  *   *   * **     * ** * *

consensus_9559#0      AGCTGTATTAATTGTTCGTGAAGCAGGAGGTTTTTGTTGTAATTTTGACGGTAAACCTGT 720
consensus_9559#1      AGCTGTATTAATTGTTCGTGAAGCAGGAGGTTTTTGTTGTAATTTTGACGGTAAACCTGT 248
consensus_9559#2      AG--GCTTTGGTTTTGACCGACTGGGGAGGTG---ACCGAAATCCAAGTGTTTTAGATAT 212
                      **  *  **  ** *    **    ******       * ***      * *  *  * *

consensus_9559#0      AGATTTAATGGCAAGAAATGTTATATGTGCGGGAACTCCAGAACTAGCTAACGCTCTTAT 780
consensus_9559#1      AGATTTAATGGC------------------------TCCAGAACTAGCTAACGCTCTTAT 284
consensus_9559#2      AAAGTCAAACAACATTCG------------------CCAAATAATATCGAAAGCTCGCGG 254
                      * * * **                             * *  * ** * ** ****    

consensus_9559#0      TCCTCTTATTCAAC---CAGTTGGTTACGCGAGAGACTGATAAAAGAAGCAGAATCACAT 837
consensus_9559#1      TCCTCTTATTCAAC---CAGTTGGTTACGCGAGAGACTGATAAAAGAAGCAGAATCACAT 341
consensus_9559#2      GTAAGCCGTTCATCTTTCGATGAATTGTATTAATATTTGGTCATTTTT-CACTGTGGCGT 313
                              **** *   *  *   **     *     ** * *      **   *  * *

consensus_9559#0      AAATATATCTATTAAGGGAAAAA--GAACCAGAGACAATCAAAATTTAGAAGTTTTCATT 895
consensus_9559#1      AAATATATCTATTAAGGGAAAAA--GAACCAGAGACAATCAAAATTTAGNNNNNNNNNNN 399
consensus_9559#2      GACTATAACTTATGGACGAACCACTAAGATTCAGGATATCAGGTCTCGGATTTTGGCGCG 373
                       * **** **  *    ***  *   *     **   ****    *  *           

consensus_9559#0      CATTTGTTGATTCTTTTAATATGTTGGTTAGTTTTTTCCATGT--ATTTATATACGTTCA 953
consensus_9559#1      NNNNNNNNNNNNCTTTTAATATGTTGGTTAGTTTTTTCCATGT--ATTTATATACGTTCA 457
consensus_9559#2      AGTTTCATACACCCATT--TGTATCAATAACGTTCTTGCATTTTAGCTGATGCCAGATCG 431
                                  *  **  * * *   * *  ** ** *** *    * **    * ** 

consensus_9559#0      -GAAAGGTGCAATGAAAGTTGTACCTTTGATTTTAGAAATGCCGTTGTGATTCCTTCCCT 1012
consensus_9559#1      -GAAAGGTGCAATGAAAGTTGTACCTTTGATTTTAGAAATGCCGTTGTGATTCCTTCCCT 516
consensus_9559#2      TGATAAATACCAT--AAGTCGAATCCCTATCCCTAACCAC-CAATTGT------------ 476
                       ** *  * * **  **** * * *  *     **   *  *  ****            

consensus_9559#0      ACTTCTTCAATGCAGCATTTATCTTCACTTGTATGTGTGTGTCTAATTATCTAGTGAGTG 1072
consensus_9559#1      ACTTCTTCAATGCAGCATTTATCTTCAC-------------------------------- 544
consensus_9559#2      ------------------------------------------------------------
                                                                                  

consensus_9559#0      TTTATCGAAAAAAAGAAATATGTGCATAGATTAAAAAAACTTAAAGAGCTGTTATATTAT 1132
consensus_9559#1      ------------------------------------------------------------
consensus_9559#2      ------------------------------------------------------------
                                                                                  

consensus_9559#0      AATAATTAGTAGTATTTAGTTTTAAATGTTTTTTCCACTTTCCTTTCTACTAAAGTATGA 1192
consensus_9559#1      ------------------------------------------------------------
consensus_9559#2      ------------------------------------------------------------
                                                                                  

consensus_9559#0      TTATTTTTTTCTCACGGCTCAGAAGTTGGTTACTATTTTCATATGATATACTCCT 1247
consensus_9559#1      -------------------------------------------------------
consensus_9559#2      -------------------------------------------------------