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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 978 fasta sequence
[CTCGCAGGCCANAATTCGGCACGAGGGGCTCTAGTATTCTAGGAGCAGCCGTCAAAGTACCTCGTATTCGTACAAAAAATTTAGTTAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACAGCTATTATTATGCTAAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTTGTAATCTTATCTGTGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTCTGGCAGATGCTGCAAATTCTGCATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAATAATNNNNNNNNNNNNNNNNNATTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACGTAAGACTGGAGACTAAACGAACACTATTCCGTCTCACT---CTACTACTACTTATACCTTAGTTTTTCTCATGATA--CTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCTGTGTTGCTAAACTCTCTCCTCTTTCTCTCTCTTTCCACCAATTTTCTATTTTGTTTTTTCGAAAATGTCCGTCTAATATGATTAGTTG-AAAAG-AAAATTGATTCATTTCTAACTCAGTGAATAGTATTTGTTACCTGTGTCATATTTATGATCGAAATATCGATTTATGTTTTCGTTCCTCTTATCATTTGATACATATATGTGTTACAATTCAATGCATAATATTTGATATCATTATTGTTATGATTAACAATTAACCAAACATGATAGCGATGTGTTTTACTCTATCACGCTGTTATGCTATTCATATTCCTTTCATTGTGTGTGTGCGTATGTGTTGATTAAATAAATATTTATTTTTTAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCATGCAGCTGCATTACCGTACTGCGTA]
[+] EMBL CD080944 [CTCGCAGGCCANAATTCGGCACGAGGGGCTCTAGTATTCTAGGAGCAGCCGTCAAAGTACCTCGTATTCGTACAAAAAATTTAGTTAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACAGCTATTATTATGCTAAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTTGTAATCTTATCTGTGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTCTGGCAGATGCTGCAAATTCTGCATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAATAATNNNNNNNNNNNNNNNNNATTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACGTAAGACTGGAGACTAAACGAACACTATTCCGTCTCACT CTACTACTACTTATACCTTAGTTTTTCTCATGATA CTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCTGTGTTGCTAAACTCTCTCCTCTTTCTCTCTCTTTCCACCAATTTTCTATTTTGTTTTTTCGAAAATGTCCGTCTAATATGATTAGTTG AAAAG AAAATTGATTCATTTCTAACTCAGTGAATAGTATTTGTTACTTGTGTCATAT ]
[-] EMBL AI977684 [ CTATTCCGTCTCACTCTACTACTACTACTTATACCTTAGTTTTTCTCATGATACTCTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCTGTGTTGCTAAACTCTCTCCTCTTTCTCTCTCTTTCCACCAATTTTCTATTTTGTTTTTTCGAAAATGTCCGTCTAATATGATTAGTTGAAAAAA AAAATTGATTCATTCCTAACTCAGTGAATAGTATTTGTTACCTGTGTCATATTTATGATCGAAATATCGATTTATGTTTTCGTTCCTCTTATCATTTGATACATATATGTGTTACAATTCAATGCATAATATTTGATATCATTATTGTTATGATTAACAATTAACCAAACATGATAGCGATGTGTTTTACTCTATCACGCTGTTATGCTATTCATATTCCTTTCATTGTGTGTGTGCGTATGTGTTGATTAAATAAATATTTATTTTTTAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCATGCAGCTGCATTACCGTACTGCGTA]
[-] EMBL AI977406 [ TCACT ATACTACTACTTATACCTTAGTTTTTCTCATGATA CTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCTGTGATGCTAAACTCTCTCCTCTTTCTCTCTCTTTCCACCAATTTTTTATTTTGTTTTTTCGAAAATGTCCGTCTAATATGATTAGTTG AAAAGAAAAATTGATTCATTTCTAACTCAGTGAATAGTATTTGTTACATGTGTCATATTTATGATCGAAATATCGATTTATGTTTTCGTTCCTCTTATCATTTGATACATATATGTGTTACAATTCAATGCATAATATTTGATATCATTATTGTTATGATTAACAATTAACCAAACATGATAGCGATGTGTTTTACTCTATCACGCTGTTATGCTAATCATATTCCTTTCATTGTGTGTGTGCGTATGTGTTGATTAAATAAATATTTAT ]
consensusID : consensus_9560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 812 fasta sequence
[GGGAGTTTGGATTTACTTGGAAATGGCCTGCACAAAACTAAACGTGTATTATATACCAACATACACAGCGATCTCCGTTTTTATCTTGATAGGTCTTTATTATATTCTGAGTGGTGAAGGCCATAGATTCGATATAGGATGGGTTTTATCTGAAACATCACCCTACCTATGGGC-TGCAATGGGTATTGGTTTAGCTATCTCCCCTTCAGTGGTTGGAGCTGCTTGGGGCATCTATATAACAGGCTCTAGTATTCTAGGAGCAGCCGTCAAAGCACCTCGTATTCGTACAAAAAATTTAGTTAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACAGCTATTATTATGCTAAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTGCGGCTGGATTGA-CTGTTGGTTTTTGTAATCTTATCTGTGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTTTGGCAGATGCTGCAAATTCTGCATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAATAATTGTAGCTATTCTTCAAATTTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACGTAAGACTGGAGACTAAACGAACACTATTCCGTTTCACTCTACTACTACTTATACCTTAGTTTTTCTCATGATACTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCAGTACTGGGTAACTCTCTCCT]
[+] EMBL CD077616 [GGGAGTTTGGATTTACTTGGAAATGGCCTGCACAAAACTAAACGTGTATTATATACCAACATACACAGCGATCTCCGTTTTTATCTTGATAGGTCTTTATTATATTCTGAGTGGTGAAGGCCATAGATTCGATATAGGATGGGTTTTATCTGAAACATCACCCTACCTATGGGCNTGC ATGGGTATTGGGTTAGCTATCTCC ]
[+] EMBL CD146628 [ TGGGTGGTGAAGGCCATAGATTCGATATAGGATGGGTTTTATCTGAAACATCGCCCTACCTATGGGC TGCAATGGGTATTGGTTTAGCTATCTCCCCTTCAGTGGTTGGAGCTGCTTGGGGCATCTATATAACAGGCTCTAGTATTCTAGGAGCAGCCGTCAAAGCACCTCGTATTCGTACAAAAAATTTAGTTAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACAGCTATTATTATGCTAAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTGCGGCTGGATTGA CTGTTGGTTTTTGTAATCTTATCTG ]
[-] EMBL CD167196 [ AATGGGTATTGGTTTAGCTATCTCCCTTTCAGTGGTTGGAGCTGCTTGGGGCATCTATATAACAGGCTCTAGTATTCTAGGAGCGGCCGTCAAAGCACCTCGTATTCGTACAAAAAATTTGGTTAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACGGCTATTATTATGCTATGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTGC GCTGGATTGACCTGTTGTTT ]
[-] EMBL CD129821 [ TTATGATAAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTGCGGCTGGATTGA CTGTTGGTTTTTGTAATCTTATCTGTGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTTTGGCAGATGCTGCAAATTCTGCATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAATAATTGTAGCTATTCTTCAAATTTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACGTAAGACTGGAGACTAAACGAACACTATTCCGTTTCACTCTACTACTACTTATACCTTAGTTTTTCTCATGATA CTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCAGTACTGGGT ]
[+] EMBL CD178717 [ GCCATTATTCGTCAAGCACATCGAGCTGGTTATGCAATGTTTGCGGCTGGATTGA CTGTTGGTTTTTGTACTCTTATCTGTGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTTTGGCAGATGCTGCAAATTCTGCATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAATAATTGTAGCTATTCTTCAAATTTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACGTAAGACTGGAGACTAAACGAACACTATTCCGTTTCACTCTACTACTACTTATACCTTAGTTTTTCTCATGATACTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTTTGCGTATCGGCTGTGTTGCTAAACTCTCTCCT]
[+] EMBL CD166446 [ CTGGATTGA CTGTTGGTTTTTGTAATCTTATCTGTGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTTTGGCAGATGCTGCAAATTCTGCATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAATAATTGTAGCTATTCTTCAAATTTCTGGCAGGAAAATTTCTGATAAAGGTTGAAGAGTACGTAAGACTGGAGACTAAACGAACACTATTCCGTTTCACTCTACTACTACTTATACCTTAGTTTTTCTCATGATACTCTCTCTCTCTCCACATGTGTTACCA TTTTTTAAAATTTAAGTTTTGCGT ]
consensusID : consensus_9560#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 108 fasta sequence
[CATGCGGCCGCGGGATTCGATTGGGGAAAGCACATCCCACGACGGACCGACACATATACCACAGATAGATTACAAAAACCAACAGTCAATCCAGCCGCAAACATTGCA]
[+] EMBL CD191983 [CATGCGGCCGCGGGATTCGATTGGGGAAAGCACATCCCACGACGGACCGACACATATACCACAGATAGATTACAAAAACCAACAGTCAATCCAGCCGCAAACATTGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9560#0 ------------------------------------------------------------
consensus_9560#1 GGGAGTTTGGATTTACTTGGAAATGGCCTGCACAAAACTAAACGTGTATTATATACCAAC 60
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 ------------------------------------------------------------
consensus_9560#1 ATACACAGCGATCTCCGTTTTTATCTTGATAGGTCTTTATTATATTCTGAGTGGTGAAGG 120
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 ------------------------------------------------------------
consensus_9560#1 CCATAGATTCGATATAGGATGGGTTTTATCTGAAACATCACCCTACCTATGGGCTGCAAT 180
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 ----------------------------------CTCGCAGGCCANAAT-TCGGCACGAG 25
consensus_9560#1 GGGTATTGGTTTAGCTATCTCCCCTTCAGTGGTTGGAGCTGCTTGGGGCATCTATATAAC 240
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 GGGCTCTAGTATTCTAGGAGCAGCCGTCAAAGTACCTCGTATTCGTACAAAAAATTTAGT 85
consensus_9560#1 AGGCTCTAGTATTCTAGGAGCAGCCGTCAAAGCACCTCGTATTCGTACAAAAAATTTAGT 300
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 TAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACAGCTATTATTATGCT 145
consensus_9560#1 TAGCATTATTTTCTGCGAAGCTGTTGCAATTTATGGGATTATTACAGCTATTATTATGCT 360
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 AAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACA 205
consensus_9560#1 AAGTCAAGTTGGGTCTTACAATCCTGCAGGTGCAAGTGAAGCCATTATTCGTCAAGCACA 420
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 TCGAGCTGGTTATGCAATGTTT------------------------TGTAATCTTATCTG 241
consensus_9560#1 TCGAGCTGGTTATGCAATGTTTGCGGCTGGATTGACTGTTGGTTTTTGTAATCTTATCTG 480
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 TGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTCTGGCAGATGCTGCAAATTCTGC 301
consensus_9560#1 TGGTATATGTGTCGGTATGGTTGGTTCTGGTGCAGCTTTGGCAGATGCTGCAAATTCTGC 540
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 ATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAAT 361
consensus_9560#1 ATTATTTGTTAAAATACTTGTAGTGGAGATTTTCGGTAGTGCAATTGGGTTATTTGGAAT 600
consensus_9560#2 -------------------------------------CATGCGGCCGCGGGATTCGATTG 23
*** * * *** *
consensus_9560#0 AATNNNNNNNNNNNNNNNNNATTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACG 421
consensus_9560#1 AATTGTAGCTATTCTTCAAATTTCTGGCAAGAAAATTTCTGATAAAGGTTGAAGAGTACG 660
consensus_9560#2 GGGAAAGCACATCCCACGACGGACCGACACATATACCACAGATAGATTACAAAAACCAAC 83
* * ** * * * **** * ** * *
consensus_9560#0 TAAGACTGGAGACTAAACGAACACTATTCCGTCTCACTCTACTACTACTTATACCTTAGT 481
consensus_9560#1 TAAGACTGGAGACTAAACGAACACTATTCCGTTTCACTCTACTACTACTTATACCTTAGT 720
consensus_9560#2 AGTCAATCCAGCC---GCAAACATTGCA-------------------------------- 108
* * ** * * **** *
consensus_9560#0 TTTTCTCATGATACTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTT 541
consensus_9560#1 TTTTCTCATGATACTCTCTCTCTCTCCACATGTGTTACCATTTTTTTAGAATTTAAGTTT 780
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 TGCGTATCGGCTGTGTTGCTAAACTCTCTCCTCTTTCTCTCTCTTTCCACCAATTTTCTA 601
consensus_9560#1 TGCGTATCGGCAGTACTGGGTAACTCTCTCCT---------------------------- 812
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 TTTTGTTTTTTCGAAAATGTCCGTCTAATATGATTAGTTGAAAAGAAAATTGATTCATTT 661
consensus_9560#1 ------------------------------------------------------------
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 CTAACTCAGTGAATAGTATTTGTTACCTGTGTCATATTTATGATCGAAATATCGATTTAT 721
consensus_9560#1 ------------------------------------------------------------
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 GTTTTCGTTCCTCTTATCATTTGATACATATATGTGTTACAATTCAATGCATAATATTTG 781
consensus_9560#1 ------------------------------------------------------------
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 ATATCATTATTGTTATGATTAACAATTAACCAAACATGATAGCGATGTGTTTTACTCTAT 841
consensus_9560#1 ------------------------------------------------------------
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 CACGCTGTTATGCTATTCATATTCCTTTCATTGTGTGTGTGCGTATGTGTTGATTAAATA 901
consensus_9560#1 ------------------------------------------------------------
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 AATATTTATTTTTTAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCATGCAGCTG 961
consensus_9560#1 ------------------------------------------------------------
consensus_9560#2 ------------------------------------------------------------
consensus_9560#0 CATTACCGTACTGCGTA 978
consensus_9560#1 -----------------
consensus_9560#2 -----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||