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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9563#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 846 fasta sequence
[AGAATTTACTACATTTCATTTTATTTATAATTGTTGTGAACAGATAATGCAAATTATATACACAAAAATTGCATTTCGGTTGAATAAAATGAAAGACTAAGAATAATAAACGAAATTCAAATACAATGATCAATTCATAGGCAATAAACATTGGCAGACTTAAAAAAGGATGCATGAAACAAGAATAAAAGTAGAAATGTTATATGGTGGATGTATTAGTTTCATGATTTATATAACAATCAGAGTAAGGAATATAAACTTAACAATGTGCACATATTGACATTAAGAATCTCATCCAAGAACCAGTTTAACGAGTAGTGAGATCACTCTTTATGAGAAAGAAACGCCACCGAGTAAAATAAATTGAATCAAATTTTAATTTATTTGATTATTAACTGGTTGAGAGAGCGAAAAAAATAGATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTAAGTGGATTGGAACACACTCAAAATTTACAGGCATTGCTACGAAGGTAGAGTGATACTGACTATGAATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACAGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACAATAGGCTTTAGAAAAAGAAAGAAAAGAACTAAAGTATACTGGATGCACGGTGTTATAATAATTAGCTTTGCTGTGTTGGAATTGTTCGTCAACATAATTCTTCATTTTGTACACAAAAACAAAAACGGTTGGTAGTTTAATTATTTAAAGGTAGTCTAGAAAAGAAGCATGATGAGAATTAGAAAAAAAGAAATACACAAAAAATGCCCTCGTGCCGATTCTTG]
[+] EMBL CD076992 [AGAATTTACTACATTTCATTTTATTTATAATTGTTGTGAACAGATAATGCAAATTATATACACAAAAATTGCATTTCGGTTGAATAAAATGAAAGACTAAGAATAATAAACGAAATTCAAATACAATGATCAATTCATAGGCAATAAACATTGGCAGACTTAAAAAAGGATGCATGAAACAAGAATAAAAGTAGAAATGTTATATGGTGGATGTATTAGTTTCATGATTTATATAACAATCAGAGTAAGGAATATAAACTTAACAATGTGCACATATTGACATTAAGAATCTCATCCAAGAACCAGTTTAACGAGTAGTGAGATCACTCTTTATGAGAAAGAAACGCCACCGAGTAAAATAAATTGAATCAAATTTTAATTTATTTGATTATTAACTGGTTGAGAGAGCGAAAAAAATAGATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTAAGTGGATTGGAACACACTCAAAATTTACAGGCATTGCTACGAAGGTAGAGTGATACTGACTATGAATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACAGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATAC ]
[-] EMBL CD077360 [ TTATGAGAAAGAAACGCCACCGAGTAAAATAAATTGAATCAAATTTTAATTTATTTGATTATTAACTGGTTGAGAGAGCGAAAAAAATAGATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTAAGTGGATTGGAACACACTCAAAATTTACAGGCATTGCTACGAAGGTAGAGTGATACTGACTATGAATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACAGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACAATAGGCATTAGAAAAAGAAAGAAAAGAACTAAAGTATACTGGATGCACGGTGTTATAATAATTAGCTTTGCTGTGTTGGAATTGTTCGTCAACATAATTCTTCATTTTGTACACAAAAACAAAAACGGTTGGTAGTTTAATTATTTAAAGGTAGTCTAGAAAAGAAGCATGATGAGAATTAGAAAAAAAGAAATACACAAAAAATGCCCTCGTGCCGATTCTTG]
[+] EMBL CD139702 [ TATATATATATATTCGTAATAAGATGTTTACAGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACAATAGGCTTTAGAAAAAGAAAGAAAAGAACTAAAGTATACTGGATGCACGGTGTTATAATAATTAGCTTTGCTGTGTTGGAATTGTTCGTCAACATAATTCTTCATTTTGTACACAAAAACAAAAACGGTTGGTAGTTTAATTATTTAGAGGTAGTCTAGAAAAGAAGCATGATGAGAATTAGAAAAAAAGA ]
[+] EMBL CD139732 [ TATATATATATATTCGTAATAAGATGTTTACTGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACAATAGGCTTTAGAAAAAGAAAGAAAA ]
consensusID : consensus_9563#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 779 fasta sequence
[TGTANTAATAATTAGCTNTGCTGTGTTGGAATTGTTCGTCAACATAATTCTTCATTTTGTACACAAAAACAAAAACGGTTGGTAGTTTAATTATTTAAAGGTAGTCTAGAAAAGAAGCATGATGAGAATTAGAAAAAAAGAAATTACACAAAAAATGCGGATATACATAATTTACAAAAACTGAGTAACAATTATACATATACATTAGCAGTGTTACTGATATACACAACTTAGCTAAAAATGAGTAGATTTCGCGAAAATGCAGAGGCCTATAACGTAATCTATATGCGAATTGGAAGTATTGATCGGAAATTAAAATTACTATTTTCATCGCCTATGAAAGCAAAAGCAGTATAAGTTGGATGGATGGATGTAACTATAAGAGTACAACAGAGTTGTGAGACATAAATTAGTATTACATGGGAATTTAATGGCGCGAAATATATGTGTAAATAACAGGATACTGTGCCATTTCTTTGATGAAATCAGAAAATGGTAGGTAGAAAACACAAAGGTAGGTGAAATGATAAAGAGAGGTAGCTAATAAAACAATAAACAGATGCGTGTAGAACACACCTTGAACAGTCTGGCCATAAAAAGTGAATATTTAATATGTACATAAAGAAAAACCAAGAATGCACAAGAAAAATACTTCACCGGAAATGTACACGTAGTGAAATATTAATATGAATTCGGAATGATTATTAAGAAAAAAGGAAGATTGGATGCTAATTATCTAAATATTGAGCTTCTGTGTGCGTAGACCAGTTTTCAAAAAC]
[-] EMBL CD076730 [TGTANTAATAATTAGCTNTGCTGTGTTGGAATTGTTCGTCAACATAATTCTTCATTTTGTACACAAAAACAAAAACGGTTGGTAGTTTAATTATTTAAAGGTAGTCTAGAAAAGAAGCATGATGAGAATTAGAAAAAAAGAAATTACACAAAAAATGCGGATATACATAATTTACAAAAACTGAGTAACAATTATACATATACATTAGCAGTGTTACTGATATACACAACTTAGCTAAAAATGAGTAGATTTCGCGAAAATGCAGAGGCCTATAACGTAATCTATATGCGAATTGGAAGTATTGATCGGAAATTAAAATTACTATTTTCATCGCCTATGAAAGCAAAAGCAGTATAAGTTGGATGGATGGATGTAACTATAAGAGTACAACAGAGTTGTGAGACATAAATTAGTATTACATGGGAATTTAATGGCGCGAAATATATGTGTAAATAACAGGATACTGTGCCATTTCTTTGATGAAATCAGAAAATGGTAGGTAGAAAACACAAAGGTAGGTGAAATGATAAAGAGAGGTAGCTAATAAAACAATAAACAGATGCGTGTAGAACACACCTTGAACAGTCTGGCCATAAAAAGTGAATATTTAA ]
[-] EMBL CD196056 [ ATTTACAAAANCTGAGTATCAATTATACATATACATTAGCAGTGTTACTGATATACACAACTTAGCTAAAAATGAGTAGATTTCGCGAAAATGCAGAGGCCTATAACGTAATCTATATGCGAATTGGAAGTATTGATCGGAAATTAAAATTACTATTTTCATCGCCTATGAAAGCAAAAGCAGTATAAGTTGGATGGATGGATGTAACTATAAGAGTACAACAGAGTTGTGAGACATAAATTAGTATTACATGGGAATTTAATGGCGCGAA ]
[-] EMBL CD195631 [ GGATACTGTGCCATTTCTTTGATGAAATCAGGAAATGGTAGGTAGGAAACACAAAGGTAGGTGAAATGATAAAGAGAGGTAGCTAATAAAACAATAAACAGATGCGTGTAGAACACACCTTGAACAGTCTGGCCATAAAAAGTGAATATTTAATATGTACATAAAGAAAAACCAAGAATGCACAAGAAAAATACTTCTCCGGAAATGTACACGTAGTGAAATATTAATATGAATTCGGAATGATTATTAAGAAA ]
[-] EMBL CD139648 [ TGTGCCATTTCTTTGATGAAATCAGAAAATGGTAGGTAGAAAACACAAAGGTAGGTGAAATGATAAAGAGAGGTAGCTAATAAAACAATAAACAGATGCGTGTAGAACACACCTTGAACAGTCTGGCCATAAAAAGTGAATATTTAATATGTACATAAAGAAAAACCAAGAATGCACAAGAAAAATACTTCACCGGAAATGTACACGTAGTGAAATATTAATATGAATTCGGAATGATTATTAAGAAA ]
[+] EMBL CD066734 [ ATTTCTTTGATGAAATCAGAAAATGGTAGGTAGAAAACACAAAGGTAGGTGAAATGATAAAGAGAGGTAGCTAATAAAACAATAAACAGATGCGTGTAGAACACACCTTGAACAGTCTGGCCATAAAAAGTGAATATTTAATATGTACATAAAGAAAAACCAAGAATGCACAAGAAAAATACTTCACCGGAAATGTACACGTAGTGAAATATTAATATGAATTCGGAATGATTATTAAGAAAAAAGGAAGATTGGATGCTAATTATCTAAATATTGAGCTTCTGTGTGCGTAGACCAGTTTTCAAAAAC]
consensusID : consensus_9563#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[GTATTGGCTTTATATGCCTAACTATCTCTTTGATGTTAATAAAAGTAGAAATGTTATATGGTGGATGTATTAGTTTCATGATTTATATAACAATCAGAGTAAGGAATATAAACTTAACAATGTGCACATATTGACATTAAGAATCTCATCCAAGAACCAGTTTAACGAGTAGTGAGATCACTCTTTATGAGAAAGAAACGCCACCGAGTAAAATAAATTGAATCAAATTTTAATTTATTTGATTATTAACTGGTTGAGAGAGCGAAAAAAATAGATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTAAGTGGATTGGAACACACTCAAAATTTACAGGCATTGCTACGAAGGTAGAGTGATACTGACTATGAATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACAGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACA]
[+] EMBL CD083157 [GTATTGGCTTTATATGCCTAACTATCTCTTTGATGTTAATAAAAGTAGAAATGTTATATGGTGGATGTATTAGTTTCATGATTTATATAACAATCAGAGTAAGGAATATAAACTTAACAATGTGCACATATTGACATTAAGAATCTCATCCAAGAACCAGTTTAACGAGTAGTGAGATCACTCTTTATGAGAAAGAAACGCCACCGAGTAAAATAAATTGAATCAAATTTTAATTTATTTGATTATTAACTGGTTGAGAGAGCGAAAAAAATAGATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTAAGTGGATTGGAACACACTCAAAATTTACAGGCATTGCTACGAAGGTAGAGTGATACTGACTATGAATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACAGCAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9563#0 --AGAATTTACTACATTTCATTTTATTTATAATTGTTGTGAACAGATAATGCAAATTATA 58
consensus_9563#2 ------------------------------------------------------------
consensus_9563#1 TGTANTAATAATTAGCTNTGCTGTGTTGGAATTGTTCGTCAACATA-ATTCTTCATTTTG 59
consensus_9563#0 TACACAAAAATTGCATTTCGGTTGAATAAAATGAAAGACTAAGAATAATAAACGAAATTC 118
consensus_9563#2 ------------------------------------------------------------
consensus_9563#1 TACACAAAAACAAAAA--CGGTTGG-TAGTTTAATTATTTAAAGGTAGTCTAGAAAAG-- 114
consensus_9563#0 AAATACAATGATCAATTCATAGGCAATAAACATTGGCAG-ACTTAAAAAAGGATGCATGA 177
consensus_9563#2 -----------------------------GTATTGGCTTTATATGCCTAACTATCTCTTT 31
consensus_9563#1 AAGCATGATGA--GAATTAGAAAAAAAGAAATTACACAAAAAATGCGGATATACATAATT 172
* * * * * *
consensus_9563#0 AACAAGAATAAAAGTAGAAATGTTATATGGTGGATGTATTAGTTTCATGATTTATATA-A 236
consensus_9563#2 GATGTTAATAAAAGTAGAAATGTTATATGGTGGATGTATTAGTTTCATGATTTATATA-A 90
consensus_9563#1 TACAAAAACTGA-GTAACAATTATACAT-----ATACATTAGCAGTGTTACTGATATACA 226
* ** * *** *** ** ** ** ***** * * * ***** *
consensus_9563#0 CAATCAGAGTAAGGAATA-TAAACTTAAC-AATGTGCACATATTGACATTAAGAATCTCA 294
consensus_9563#2 CAATCAGAGTAAGGAATA-TAAACTTAAC-AATGTGCACATATTGACATTAAGAATCTCA 148
consensus_9563#1 CAACTTAGCTAAAAATGAGTAGATTTCGCGAAAATGCAGAGGCCTATAACGTAATCTATA 286
*** *** * * ** * ** * ** **** * * * * *
consensus_9563#0 TCCAA---GAACCAGTTTAACGAGTAGTGAGATCACTCTTT--ATGAGAAAGAAACGCCA 349
consensus_9563#2 TCCAA---GAACCAGTTTAACGAGTAGTGAGATCACTCTTT--ATGAGAAAGAAACGCCA 203
consensus_9563#1 TGCGAATTGGAAGTATTGATCGGAAATTAAAATTACTATTTTCATCGCCTATGAAAGCAA 346
* * * * * ** * ** * * * ** *** *** ** * ** ** *
consensus_9563#0 CCGAGTAAAATAAATTGAATCAAATTTTA-ATTTATTTGATTATTAACTGGTTGAGAGAG 408
consensus_9563#2 CCGAGTAAAATAAATTGAATCAAATTTTA-ATTTATTTGATTATTAACTGGTTGAGAGAG 262
consensus_9563#1 --AAGCAGTATAAGTTGGATGGATGGATGTAACTATAAGAGTACAACAGAGTTGTGAGAC 404
** * **** *** ** * * * *** ** ** * **** ****
consensus_9563#0 CGAAAAAAATAG-ATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTA-AGTGGAT 466
consensus_9563#2 CGAAAAAAATAG-ATATAAAGAATCGCATGAATAAGCTTTCTGCTTGCACTA-AGTGGAT 320
consensus_9563#1 ATAAATTAGTATTACATGGGAATTTAATGGCGCGAAATATATGTGTAAATAACAGGATAC 464
*** * ** * ** * * * * * * ** * * * ** *
consensus_9563#0 TGGAACACACTCAAAATTTA--CAGGCATTGCTACGAAGGTAGAGTGATACTGACT---A 521
consensus_9563#2 TGGAACACACTCAAAATTTA--CAGGCATTGCTACGAAGGTAGAGTGATACTGACT---A 375
consensus_9563#1 TGTGCCATTTCTTTGATGAAATCAGAAAATGGTAGGTAGAAAACACAAAGGTAGGTGAAA 524
** ** ** * *** * ** ** * ** * * * * *
consensus_9563#0 TGA-ATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACA 580
consensus_9563#2 TGA-ATAGTTTGTTTCCAAGTAAAAAGGTATATATATATATTCGTAATAAGATGTTTACA 434
consensus_9563#1 TGATAAAGAGAGGTAGCTAATAAAACAATAAACAGATGCGTGTAGAACACACCTTGAACA 584
*** * ** * * * * ***** ** * * ** * ** * * ***
consensus_9563#0 G-----CAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACAATAGGCTTTAGAA 635
consensus_9563#2 G-----CAATAGAATAGTGATACTTTTCAGGTTACATCAGATATACA------------- 476
consensus_9563#1 GTCTGGCCATAAAAAGTGAATATTTAATATGT-ACAT-AAAGAAAAACCAAGAATGCACA 642
* * *** ** *** ** * ** **** * * * * *
consensus_9563#0 AAAGAAAGAAAAGAACTAAAGTATACTGGATGCACGGTGTTATAATAATTAGCTTTGCTG 695
consensus_9563#2 ------------------------------------------------------------
consensus_9563#1 AGAAAAATACTTCACCGGAAATGTACACGTAGTGAAATATTAATATGAATTCGGAATGAT 702
consensus_9563#0 TGTTGGAATTGTTCGTCAACATAATTCTTCATTTTGTACACAAAAACAAAAACGGTTGGT 755
consensus_9563#2 ------------------------------------------------------------
consensus_9563#1 TATTAAGAAAAAAGGAAGATTGGATGCTA-ATTATCTAAATATTGAGCTTCTGTGTGCGT 761
consensus_9563#0 AGTTTAATTATTTAAAGGTAGTCTAGAAAAGAAGCATGATGAGAATTAGAAAAAAAGAAA 815
consensus_9563#2 ------------------------------------------------------------
consensus_9563#1 AGACCAGTTTTCAAAAAC------------------------------------------ 779
consensus_9563#0 TACACAAAAAATGCCCTCGTGCCGATTCTTG 846
consensus_9563#2 -------------------------------
consensus_9563#1 -------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||