These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 917 fasta sequence [GATTAAGGCTAACTGAATTCTTATTTAAAAGTATTTCTGAGTGAGATTCGAAAAGTTCATAACATTTACGATATTATT-AAAAAAGAAATCAGCAAAGAAAACACTTGTAACAACAAAAGCAGAATGCAACAAATAACAAGGAAATTAATGGAAGTTAATCAGATTATCTGTTGAACAGTTAAAATAAGGAAAACAAAAGAACTGAGATATCGTCACTTACTGTGACAATATAAAGTGGTCATCAAGTATGTTATTAATATTAGTAAAAGAGACAATAATTTTATCTTAGAAAGACTTATTTTTGCCAAATGAGGTTTTTATTTATAAAAAAAATTCAAATCATTTAGAACGATTAATAT-TACCGGGATGAGAGGAGGGGGAGGGATAGTGATTAAAAAAAACAAGGAAGTCCCAAAATTATACAACGATACTATCTAAAAACAATAGAAATTATAGTTACATAGTGAATAAATTCTTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAATACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATCATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCAGTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTTTGTAATTCTTGTGTGAACAATTCAAGGAATAAACAATTCA] [+] EMBL CD123490 [GATTAAGGCTAACTGAATTCTTATTTAAAAGTATTTCTGAGTGAGATTCGAAAAGTTCATAACATTTACGATATTATT AAAAAAGAAATCAGCAAAGAAAACACTTGTAACAACAAAAGCAGAATGCAACAAATAACAAGGAAATTAATGGAAGTTAATCAGATTATCTGTTGAACAGTTAAAATAAGGAAAACAAAAGAACTGAGATATCGTCACTTACTGTGACAATATAAAGTGGTCATCAAGTATGTTATTAATATTAGTAAAAGAGACAATAATTTTATCTTAGAAAGACTTATTTTTGCCAAATGAGGTTTTTATTTATAAAAAAAATTCAAATCATTTAGAACGATTAATATNTACCGGGATGAGAGGAGGGGGAGGGATAGTGATTAAAAAAAACAAGGAAGTCCCAAAATTATACAACGATACTATCTAAAAACAATAGAAATTATAGTTACATAGTGAATAAATTCTTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAACATCATTGTACGA ] [+] EMBL CD184835 [ GAAAAGTTCATAACATTTACGATATTATTAAAAAAAGAAATCAGCAAAGAAAACACTTGTAACAACAAAAGCAGAATGCAACAAATAACAAGGAAATTAATGGAAGTTAATCAGATTATCTGTTGAACAGTTAAAATAAGGAAAACAAAAGAACTGAGATATCGTCACTTACTGTGACAATATAAAGTGGTCATCAAGTATGTTATTAATATTAGTAAAAGAGACAATAATTTTATCTTAGAAAGACTTATTTTTGCCAAATGAGGTTTTTATTTATAAAAAAAATTCCAATCATTTAGAACGATTAATAT TACCGGGATGAGAGGAGGGGGAGGGATAGTGATTAAAAAAA ] [+] EMBL CD073341 [ GGTTTTTATTTATAAAAAAAATTCAAATCATTTAAAACGATTAATAT TACCGGGATGAAAGGAGGGGGAGGGATAGTGATTAAAAAAAACAAGGAAGTCCCAAAATTATACAACGATACTATCTAAAAACAATAGAAATTATAGTTACATAGTGAATAAATTCTTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAATACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATCATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCAGTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTNTGTAATTCTTGTGTGAACAATTCAAGGAATA ] [+] EMBL CD091422 [ GATAGTGATTAAAAAAAACAAGGAAGTCCCAAAATTATACAACGATACTATCTAAAAACAATAGAAATTATAGTTACATAGTGAATAAATTCTTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGTAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGGTGCGT ] [-] EMBL CD078881 [ TCTATAAACTTGTACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAATACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATCATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCAGTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTTTGTAATTCTTGTGTGAACAATTCAAGGAATAAACAATTCA] [-] EMBL CD192091 [ TACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGT ] [+] EMBL CD178854 [ CAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAATACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATCATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCAGTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTTTGTAATTCTTGTGTGAACAATTCAAGGAATAAACAATTC ] consensusID : consensus_9565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 419 fasta sequence [TGAACAAAGAAATGAATCCAAGTGGAATATACTAGGTGGTATGCTGCCATTCAACAATATTGAAAGTTGTAAAAAAGATAGTAATAATTCTCTTTCTTGCGATACAAGTATTGACAGTTATCATATCTGTTCCAAATCAGATTTCGACACAGTAGAGATAGGTACTGATATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTTTCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACATAAAAAAGCCAATGAAATTCCAATTGTTATTCCAGATCCTTTAGGTTTTATCAGCAATAAATACAGTTCAAGGGATATAAGTGAACAGATTTCACTGAATTATAATCAGTATCAATGTTTAACAGAGACAATACGAGTAATCGTAGAAA] [+] EMBL CD097798 [TGAACAAAGAAATGAATCCAAGTGGAATATACTAGGTGGTATGCTGCCATTCAACAATATTGAAAGTTGTAAAAAAGATAGTAATAATTCTCTTTCTTGCGATACAAGTATTGACAGTTATCATATCTGTTCCAAATCAGATTTCGACACAGTAGAGATAGGTACTGATATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTTTCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACAT AAAAAGCCAATGAAATTCCAATTGTTATTCCAGATCCTTTAGGTTTTATCA ] [+] EMBL CD091418 [ TCCAAATCAGATTTCGACACAGTAGAGATAGGTACTGATATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTTTCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACATAAAAAAGCCAATGAAATTCCAATTGTTATTCCAGATCCTTTAGGTTTTATCAGCAATAAATACAGTTCAAGGGATATAAGTGAACAGATTTCACTGAATTATAATCAGTATCAATGTTTAACAGAGACAATACGAGTAATCGTAGAAA] [+] EMBL CD191800 [ ACTGATATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTTTCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACATAAAAAAGCCAATGAAATTCCAATTGTTATTCCAGATCCTTTAGGTTTTATCAGCAATAAATACAGTTCAAGGGATATAAGTGAACAGATTTCACTGAATTATAATCAGTTTCAATGTTTAACAGAGACAATACGAGTAATCGTAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9565#0 GATTAAGGCTAACTGAATTCTTATTTAAAAGTATTTCTGAGTGAGATTCGAAAAGTTCAT 60 consensus_9565#1 ------------------------------------------------------------ consensus_9565#0 AACATTTACGATATTATTAAAAAAGAAATCAGCAAAGAAAACACTTGTAACAACAAAAGC 120 consensus_9565#1 ------------------------------------------------------------ consensus_9565#0 AGAATGCAACAAATAACAAGGAAATTAATGGAAGTTAATCAGATTATCTGTTGAACAGTT 180 consensus_9565#1 ------------------------------------------------------------ consensus_9565#0 AAAATAAGGAAAACAAAAGAACTGAGATATCGTCACTTACTGTGACAATATAAAGTGGTC 240 consensus_9565#1 TGAACAAAGAAATGAATCCAAGTGGAATAT--------ACTA-GGTGGTATGCTGCCAT- 50 ** ** **** ** ** ** **** *** * *** * * consensus_9565#0 ATCAAGTATGTTATTAATATTAGTAAAAGAGACAATAATTTTATCTTAGAAAGACTTATT 300 consensus_9565#1 -TCAACAATATTGAAAGTTGTAAAAAAGATAGTAATAATTCTCTTTCTTGCGATACAAGT 109 **** ** ** * * ** *** ******* * * * * * consensus_9565#0 TTTGCCAAATGAGGTTTTTATTTATAAAAAAAATTCAAATCATTTAGAACGATTAATATT 360 consensus_9565#1 ATTGACAGTTATCATATCTGTTCCAAATCAGATTTCGACACAGTAGAGATAGGTACTGAT 169 *** ** * * * * ** ** * * *** * ** * * ** * * consensus_9565#0 ACCGGGATGAGAGGAGGGGGAGGGATAGTGATTAAAAAAAACAA-GGAAGTCCCAAAATT 419 consensus_9565#1 ATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTT 229 * * * ** * * ** * * * ** ** * * ** ** consensus_9565#0 ATACAACGATAC-TATCTAAAAACAAT--AGAAATTATA-GTTACATAGTGAATAAATTC 475 consensus_9565#1 TCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACATAAAAAAGCCAATGAAATT 289 * ** * * * ** ** * *** ***** * * * * ** *** ** * consensus_9565#0 TTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAAC 535 consensus_9565#1 CC------AATTGTTATTCCAGATCCTTTAGGT---TTTATCA----GCAATAAATACAG 336 ** * * * ** * * * * *** * * * *** * consensus_9565#0 ATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAG 595 consensus_9565#1 TTCAAGGGATATAAGTGAACAGATTTCACTGAATTATAATCAGTATC---AATGTTTAAC 393 *** * * ****** **** * *** ***** ** * *** ** consensus_9565#0 GGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCT 655 consensus_9565#1 AGAGACAATACGAGTAATC-GTAGAAA--------------------------------- 419 ** *** * * ** * ** ** consensus_9565#0 CGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAAT 715 consensus_9565#1 ------------------------------------------------------------ consensus_9565#0 ACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATC 775 consensus_9565#1 ------------------------------------------------------------ consensus_9565#0 ATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCA 835 consensus_9565#1 ------------------------------------------------------------ consensus_9565#0 GTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTTTGTAATTCTTGTGTGAAC 895 consensus_9565#1 ------------------------------------------------------------ consensus_9565#0 AATTCAAGGAATAAACAATTCA 917 consensus_9565#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||