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Schistosoma mansoni
cluster # 9565 cluster # 9565       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9565#0 length = 917 sequences # 7  
consensus_9565#1 length = 419 sequences # 3  

consensusID : consensus_9565#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 917
fasta sequence
                              [GATTAAGGCTAACTGAATTCTTATTTAAAAGTATTTCTGAGTGAGATTCGAAAAGTTCATAACATTTACGATATTATT-AAAAAAGAAATCAGCAAAGAAAACACTTGTAACAACAAAAGCAGAATGCAACAAATAACAAGGAAATTAATGGAAGTTAATCAGATTATCTGTTGAACAGTTAAAATAAGGAAAACAAAAGAACTGAGATATCGTCACTTACTGTGACAATATAAAGTGGTCATCAAGTATGTTATTAATATTAGTAAAAGAGACAATAATTTTATCTTAGAAAGACTTATTTTTGCCAAATGAGGTTTTTATTTATAAAAAAAATTCAAATCATTTAGAACGATTAATAT-TACCGGGATGAGAGGAGGGGGAGGGATAGTGATTAAAAAAAACAAGGAAGTCCCAAAATTATACAACGATACTATCTAAAAACAATAGAAATTATAGTTACATAGTGAATAAATTCTTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAATACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATCATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCAGTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTTTGTAATTCTTGTGTGAACAATTCAAGGAATAAACAATTCA]

[+] EMBL CD123490             [GATTAAGGCTAACTGAATTCTTATTTAAAAGTATTTCTGAGTGAGATTCGAAAAGTTCATAACATTTACGATATTATT AAAAAAGAAATCAGCAAAGAAAACACTTGTAACAACAAAAGCAGAATGCAACAAATAACAAGGAAATTAATGGAAGTTAATCAGATTATCTGTTGAACAGTTAAAATAAGGAAAACAAAAGAACTGAGATATCGTCACTTACTGTGACAATATAAAGTGGTCATCAAGTATGTTATTAATATTAGTAAAAGAGACAATAATTTTATCTTAGAAAGACTTATTTTTGCCAAATGAGGTTTTTATTTATAAAAAAAATTCAAATCATTTAGAACGATTAATATNTACCGGGATGAGAGGAGGGGGAGGGATAGTGATTAAAAAAAACAAGGAAGTCCCAAAATTATACAACGATACTATCTAAAAACAATAGAAATTATAGTTACATAGTGAATAAATTCTTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAACATCATTGTACGA                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD184835             [                                                 GAAAAGTTCATAACATTTACGATATTATTAAAAAAAGAAATCAGCAAAGAAAACACTTGTAACAACAAAAGCAGAATGCAACAAATAACAAGGAAATTAATGGAAGTTAATCAGATTATCTGTTGAACAGTTAAAATAAGGAAAACAAAAGAACTGAGATATCGTCACTTACTGTGACAATATAAAGTGGTCATCAAGTATGTTATTAATATTAGTAAAAGAGACAATAATTTTATCTTAGAAAGACTTATTTTTGCCAAATGAGGTTTTTATTTATAAAAAAAATTCCAATCATTTAGAACGATTAATAT TACCGGGATGAGAGGAGGGGGAGGGATAGTGATTAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD073341             [                                                                                                                                                                                                                                                                                                                         GGTTTTTATTTATAAAAAAAATTCAAATCATTTAAAACGATTAATAT TACCGGGATGAAAGGAGGGGGAGGGATAGTGATTAAAAAAAACAAGGAAGTCCCAAAATTATACAACGATACTATCTAAAAACAATAGAAATTATAGTTACATAGTGAATAAATTCTTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAATACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATCATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCAGTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTNTGTAATTCTTGTGTGAACAATTCAAGGAATA         ]
[+] EMBL CD091422             [                                                                                                                                                                                                                                                                                                                                                                                                 GATAGTGATTAAAAAAAACAAGGAAGTCCCAAAATTATACAACGATACTATCTAAAAACAATAGAAATTATAGTTACATAGTGAATAAATTCTTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGTAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGGTGCGT                                                                                                                                                                                                                ]
[-] EMBL CD078881             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCTATAAACTTGTACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAATACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATCATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCAGTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTTTGTAATTCTTGTGTGAACAATTCAAGGAATAAACAATTCA]
[-] EMBL CD192091             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TACAGAATTAACATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGT                                                                                                                                                                                                                                     ]
[+] EMBL CD178854             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAATACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATCATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCAGTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTTTGTAATTCTTGTGTGAACAATTCAAGGAATAAACAATTC ]


>consensus_9565#0 GATTAAGGCTAACTGAATTCTTATTTAAAAGTATTTCTGAGTGAGATTCGAAAAGTTCAT AACATTTACGATATTATTAAAAAAGAAATCAGCAAAGAAAACACTTGTAACAACAAAAGC AGAATGCAACAAATAACAAGGAAATTAATGGAAGTTAATCAGATTATCTGTTGAACAGTT AAAATAAGGAAAACAAAAGAACTGAGATATCGTCACTTACTGTGACAATATAAAGTGGTC ATCAAGTATGTTATTAATATTAGTAAAAGAGACAATAATTTTATCTTAGAAAGACTTATT TTTGCCAAATGAGGTTTTTATTTATAAAAAAAATTCAAATCATTTAGAACGATTAATATT ACCGGGATGAGAGGAGGGGGAGGGATAGTGATTAAAAAAAACAAGGAAGTCCCAAAATTA TACAACGATACTATCTAAAAACAATAGAAATTATAGTTACATAGTGAATAAATTCTTTAC CAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAACATCAT TGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAGGGAAC CAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCTCGAAA CTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAATACCTG TTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATCATACT TTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCAGTTGG ACTGCTCGAAGTACAATTATTAGATCGTTCAACATTTTGTAATTCTTGTGTGAACAATTC AAGGAATAAACAATTCA



consensusID : consensus_9565#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 419
fasta sequence
                              [TGAACAAAGAAATGAATCCAAGTGGAATATACTAGGTGGTATGCTGCCATTCAACAATATTGAAAGTTGTAAAAAAGATAGTAATAATTCTCTTTCTTGCGATACAAGTATTGACAGTTATCATATCTGTTCCAAATCAGATTTCGACACAGTAGAGATAGGTACTGATATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTTTCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACATAAAAAAGCCAATGAAATTCCAATTGTTATTCCAGATCCTTTAGGTTTTATCAGCAATAAATACAGTTCAAGGGATATAAGTGAACAGATTTCACTGAATTATAATCAGTATCAATGTTTAACAGAGACAATACGAGTAATCGTAGAAA]

[+] EMBL CD097798             [TGAACAAAGAAATGAATCCAAGTGGAATATACTAGGTGGTATGCTGCCATTCAACAATATTGAAAGTTGTAAAAAAGATAGTAATAATTCTCTTTCTTGCGATACAAGTATTGACAGTTATCATATCTGTTCCAAATCAGATTTCGACACAGTAGAGATAGGTACTGATATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTTTCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACAT AAAAAGCCAATGAAATTCCAATTGTTATTCCAGATCCTTTAGGTTTTATCA                                                                                                ]
[+] EMBL CD091418             [                                                                                                                                  TCCAAATCAGATTTCGACACAGTAGAGATAGGTACTGATATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTTTCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACATAAAAAAGCCAATGAAATTCCAATTGTTATTCCAGATCCTTTAGGTTTTATCAGCAATAAATACAGTTCAAGGGATATAAGTGAACAGATTTCACTGAATTATAATCAGTATCAATGTTTAACAGAGACAATACGAGTAATCGTAGAAA]
[+] EMBL CD191800             [                                                                                                                                                                   ACTGATATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTTTCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACATAAAAAAGCCAATGAAATTCCAATTGTTATTCCAGATCCTTTAGGTTTTATCAGCAATAAATACAGTTCAAGGGATATAAGTGAACAGATTTCACTGAATTATAATCAGTTTCAATGTTTAACAGAGACAATACGAGTAATCGTAGAAA]


>consensus_9565#1 TGAACAAAGAAATGAATCCAAGTGGAATATACTAGGTGGTATGCTGCCATTCAACAATAT TGAAAGTTGTAAAAAAGATAGTAATAATTCTCTTTCTTGCGATACAAGTATTGACAGTTA TCATATCTGTTCCAAATCAGATTTCGACACAGTAGAGATAGGTACTGATATTATTGCTGA GGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTTTCAAAAAGTCA TGTTTCCGAATATAATTTGGAAATCGCACATAAAAAAGCCAATGAAATTCCAATTGTTAT TCCAGATCCTTTAGGTTTTATCAGCAATAAATACAGTTCAAGGGATATAAGTGAACAGAT TTCACTGAATTATAATCAGTATCAATGTTTAACAGAGACAATACGAGTAATCGTAGAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9565#0      GATTAAGGCTAACTGAATTCTTATTTAAAAGTATTTCTGAGTGAGATTCGAAAAGTTCAT 60
consensus_9565#1      ------------------------------------------------------------
                                                                                  

consensus_9565#0      AACATTTACGATATTATTAAAAAAGAAATCAGCAAAGAAAACACTTGTAACAACAAAAGC 120
consensus_9565#1      ------------------------------------------------------------
                                                                                  

consensus_9565#0      AGAATGCAACAAATAACAAGGAAATTAATGGAAGTTAATCAGATTATCTGTTGAACAGTT 180
consensus_9565#1      ------------------------------------------------------------
                                                                                  

consensus_9565#0      AAAATAAGGAAAACAAAAGAACTGAGATATCGTCACTTACTGTGACAATATAAAGTGGTC 240
consensus_9565#1      TGAACAAAGAAATGAATCCAAGTGGAATAT--------ACTA-GGTGGTATGCTGCCAT- 50
                        ** ** ****  **   ** **  ****        ***  *    ***   *   * 

consensus_9565#0      ATCAAGTATGTTATTAATATTAGTAAAAGAGACAATAATTTTATCTTAGAAAGACTTATT 300
consensus_9565#1      -TCAACAATATTGAAAGTTGTAAAAAAGATAGTAATAATTCTCTTTCTTGCGATACAAGT 109
                       ****  ** **   * *  **  ***      ******* * * *           * *

consensus_9565#0      TTTGCCAAATGAGGTTTTTATTTATAAAAAAAATTCAAATCATTTAGAACGATTAATATT 360
consensus_9565#1      ATTGACAGTTATCATATCTGTTCCAAATCAGATTTCGACACAGTAGAGATAGGTACTGAT 169
                       *** **  *    * * * **   **  * * *** *  ** *    *    ** *  *

consensus_9565#0      ACCGGGATGAGAGGAGGGGGAGGGATAGTGATTAAAAAAAACAA-GGAAGTCCCAAAATT 419
consensus_9565#1      ATTATTGCTGAGGAGTGTATAGAAAAACAGAAAACACCTGATAATAAAAATGCTGAAGTT 229
                      *           *   *   **  * *  **  * *    * **   ** * *  ** **

consensus_9565#0      ATACAACGATAC-TATCTAAAAACAAT--AGAAATTATA-GTTACATAGTGAATAAATTC 475
consensus_9565#1      TCAAAAAGTCATGTTTCCGAATATAATTTGGAAATCGCACATAAAAAAGCCAATGAAATT 289
                        * ** *  *  * **  ** * ***   *****   *  * * * **  *** ** * 

consensus_9565#0      TTTACCAAAAATATGAGAACAAGACAGAAAAGGACATCTATAAACTTGTACAGAATTAAC 535
consensus_9565#1      CC------AATTGTTATTCCAGATCCTTTAGGT---TTTATCA----GCAATAAATACAG 336
                              ** * * *   **   *    * *    * *** *    * *   ***  * 

consensus_9565#0      ATCATTGTACGAAAGTGATGAGATGAAATACAATGATAATGAGACTTTAGAATACAGAAG 595
consensus_9565#1      TTCAAGGGATATAAGTGAACAGATTTCACTGAATTATAATCAGTATC---AATGTTTAAC 393
                       ***  * *   ******  ****   *   *** ***** **  *    ***    ** 

consensus_9565#0      GGAACCAAAGCAATCAAACAGTTGAGGGACATACAATTTTAGCCACAATAAAGCCATTCT 655
consensus_9565#1      AGAGACAATACGAGTAATC-GTAGAAA--------------------------------- 419
                       **  ***  * *  ** * ** **                                   

consensus_9565#0      CGAAACTTGGAGCATTGTCTTTCAATAGATAGTTCTTTGGAGAAATGGTTGCGTAACAAT 715
consensus_9565#1      ------------------------------------------------------------
                                                                                  

consensus_9565#0      ACCTGTTTCCAGAAAGCTTTCTGGAAATCACATAATTTCAGCCTCCAAAATGACTGAATC 775
consensus_9565#1      ------------------------------------------------------------
                                                                                  

consensus_9565#0      ATACTTTCAACACTAGGACGTCCGTCGTCATATTCCGTGCTATGCACACTAACATTGTCA 835
consensus_9565#1      ------------------------------------------------------------
                                                                                  

consensus_9565#0      GTTGGACTGCTCGAAGTACAATTATTAGATCGTTCAACATTTTGTAATTCTTGTGTGAAC 895
consensus_9565#1      ------------------------------------------------------------
                                                                                  

consensus_9565#0      AATTCAAGGAATAAACAATTCA 917
consensus_9565#1      ----------------------
                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)