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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 642 fasta sequence
[TTTATGGCATTTCGACGAAGTTTATGTATTTCTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAATATTTTTTATTG-A-AGCATATCCTTACTTACTTATTTACGCCTGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGCCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTAGCATATCGCTTTATAATGAGGTATAAGTTGAGATACTGCATTTGATTCAGTACATATTCCAAAAATGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGTCACGTCTTCATTGTTAAAGTTGTGCATTATATTCAGGACTTCTAGTCCTTTTTCCCGTCCCCATTTAGTTAGTGAGTCCTGTCTATTAAAGTTTAGTTTTTCCTAGACATTACATT]
[+] EMBL CD090625 [TTTATGGCATTTCGTCGAAGTTTATGTATTTCTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAA ATTTTTT TTG A AGCATATCCTTACTTACTTATCTACGCCTGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCCGCCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGCCTCCATTCGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTT ]
[+] EMBL CD090641 [ GACGAAGTTTATGTATTTCTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAATATTTTTTAATG A AGCATATCCTTACTTACTTATCTACGCCTGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGTCCTGGGCCTTCCTTTCTAGTTCTAACCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTAGCATATCGCTTTATAATGAGGTATAAGTTGAGATACTGCATTTGATTCAGTACATATTCCAAAAATGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGCCACGTCTTCATTGTTAAAGTTGCGCATTATATTCAGGACTTCTAGTC ]
[+] EMBL CD090626 [ catGAAGTTTATGTATTTCTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAATATTTTTTATTG A AGCATATCCTTACTTACTTATTTACGCCTGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGCCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGNGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTATCATATCGCTTTATAATGACGTTTCAGTTGAGATACTGCATTCGATTCAGTACATATTCCAAAAATGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGTCACGTCTTCATTGTTAAAGTTGTGCCTTATACCCACGACCTCCAGTCCTCTTTCCCG CCCCATTTATCTAGCGAGTCCTGT TTTTAAAG CCAGTTTCTCCTACACCTTACA ]
[+] EMBL CD090652 [ cccaccccATGTATTTCTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAATATTTTTTATTGTATATCATATCCTTACTTACTTATTTACGCCTGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGCCCCGCGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATCCAATATTACCATATCGCTCTATAATGAGGTATAAGCTGAGATACTGCATTTGAT ]
[+] EMBL CD090647 [ CTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAATATTTTTTAATG A AGCATATCCTTACTTACTTATTTACGCCTGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGNCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGNTCATTCTTCTCATGTCTGTCTCCATTNGTCGGGGNAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGNGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGCGTNNTTCTTAAATCATACTATTCAATATTAGCATATCGCTTTATAATGAGGTATAAGCNGAGATACTGCATTTGATTCAGTACATATTCCAAAAATGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGTCACGTCTTCATTGTTAAAGTTGTGCATTATATTCAGGACTTCTAGT CTTTTTCCCGTCCCCATTTAGTTAGTGAGTCCTGTCTATNACAGTTTAGTTTTTTCTAGACATTACAT ]
[+] EMBL CD090650 [ CTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTAAAAAATATTTTTTATTG A AGCATATCCTTACTTACTTATTTACGCCTGTTACTCCCAATGGAGCATAGGCCGTCGACCAGCATTCTCCAATCTACTCTGCCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTANCATATCGC ]
[+] EMBL CD090636 [ CTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAATATTTTTTAATG A AGCATATCCTTACTTACTTATCTACGCCCGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGTCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTAGCATATCGCTTTATAATGAGGTATAAGTTGAGATACTGCATTTGATTCAGTACATATTCCAAAAATGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGTCACGTCTTCATTGTTAAAGTTGTGCATTATATNCAGGACTTCTAGTCCTTTTTCCCGTCCCCATTTA ]
[-] EMBL CD090635 [ GTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGTCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTAGCATATCGCTTTATAATGAGGTATAAGTTGAGATACTGCATTTGATTCTGTACATATTCCAAAAATGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGTCACGTCTTCATTGTTAAAGTTGTGCATTATATTCAGGACTTCTAGT CTTTTTCCCGTCCCCATTTAGTTAGTGAGTCCTGTATATTAGAGTTTAGTTTTTCCTAGACATTACATT]
consensusID : consensus_9569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence
[GCGCAAGCACTAAATTGGGGTGCAATCTGGGCCCTCCAAGATCTGTGATACCCTTCTGGAGTGTATTCAGGAACAGTGACATGCTTATTGTATCGTGCAAAATAATAATCTTTATTAGCCTCTGGATCAGTGCTTTCTCGTCTCCAATGATATAAGACTAGATTATCTTGTCTAGCGGAATTTGTAAAAGGTGTCCATTGCCAAGAACGAACTCGTCCTACACCAATCACAGCTTTGGGTTGTTTATAAAGAGGTGTATTATCAGTTGGCATAATCGGAGGAAGATTATTGTTAAGAGTGCTATGTAAGCCCCAAACTTCACGAGGAACATGACCGGGCCTTTTTGGTGGTGGGTTAGGACGATAACTCTTTCTTTTCTCTGCACGACTCAGAATAGCTTCTTTATCAAGCATAGACTTTCTGGGACTTGATTCATTCAGATCGAGAATATCTAGGACATCCATTGCAGTACCCATTGTTTGAAAAACAATGCAAAGAAAGGTGAAAATAACCCCTAGGT]
[+] EMBL CD128504 [GCGCAAGCACTAAATTGGGGTGCAATCTGGGCCCTCCAAGATCTGTGATACCCTTCTGGAGTGTATTCAGGAACAGTGACATGCTTATTGTATCGTGCAAAATAATAATCTTTATTAGCCTCTGGATCAGTGCTTTCTCGTCTCCAATGATATAAGACTAGATTATCTTGTCTAGCGGAATTTGTAAAAGGTGTCCATTGCCAAGAACGAACTCGTCCTACACCAATCACAGCTTTGGGTTGTTTATAAAGAGGTGTATTATCAGTTGGCATAATCGGAGGAAGATTATTGTTAAGAGTGCTATGTAAGCCCCAAACTTCACGAGGAACATGACCGGGCCTTTTTGGTGGTGGGTTAGGACGATAACTCTTTCTTTTCTCTGCACGACTCAGAATAGCTTCTTTATCAAGCATAGACTTTCTGGGACTTGATTCATTCAGATCGAGAATATCTAGGACATCCATTGCAGTACCCATTGTTTGAAAAACAATGCAAAGAAAGGTGAA ]
[-] EMBL AI976096 [ GTATTATCAGTTGGCATAATCGGAGGAAGATTATTGTTAAGAGTGCTATGTAAGCCCCAAACTTCACGAGGAACATGACCGGGCCTTTTTGGTGGTGGGTTAGGACGATAACTCTTTCTTTTCTCTGCACGACTCAGAATAGCTTCTTTATCAAGCATAGACTTTCTGGGACTTGATTCATTCAGATCGAGAATATCTAGGACATCCATTGCAGTACCCATTGTTTGAAAATCAATGCAAAGAAAGGTGAAAATAACCCCTAGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9569#0 TTTATGGCATTTCGACGAAGTTTATGTATTTCTTTATAACCCCTTACTGTAATTTATTGA 60
consensus_9569#1 ------------------------------------------------------------
consensus_9569#0 AGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCT 120
consensus_9569#1 --------GCGCAAGC--ACTAAATTGGGGTGCA-ATCTGGGCCCTCCAAGATCTGTGAT 49
* * * ***** *** * ** * * ** * * *
consensus_9569#0 ACATCTATAAAATATTTTTTATTGAAGCATATCCTTACTTACTTATTTACGCCTGTTACT 180
consensus_9569#1 ACCCTTCTGGAGTGTATTCA---GGAACAGTGACATGCTTATTGTATCGTGCAAAATAAT 106
** * * * * * ** * * ** * * **** * * ** ** *
consensus_9569#0 CCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGCCCTGGGCCTTCCT 240
consensus_9569#1 ---AATCTTTATTAGCCTCTGGATCAGTGCTTTCTCGTCTCCAATGATATAAGACTAGAT 163
*** *** * ** *** * ** *** * ** * * ** *
consensus_9569#0 TTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAA 300
consensus_9569#1 TATCTTGTCTAGCGGAAT-TTGTAAAAG------GTGTCCATTGCCA---------AGAA 207
* **** * * * **** * **** * *** **
consensus_9569#0 TGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCAT 360
consensus_9569#1 CGAACTC----GTCCTACACCAATCA--CAGCTTTGGGTTGTTTATAAAGAGGTGTAT-T 260
* *** ** * * * ** ** *** * * ** ** * *
consensus_9569#0 ATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTAGCATAT 420
consensus_9569#1 ATCAGTTGGCATAATCGGAGGAAGATTATTGTTAAGA-GTGCTATGTAAGCCCCAAACTT 319
** * * **** * * ** ** **** * **** ** * *
consensus_9569#0 CGCTTTATA-ATGAGGTATAAGTTGAGATACTGCATTTGATTCAGTACATATTCCAAAAA 479
consensus_9569#1 CACGAGGAACATGACCGGGCCTTTTTGGTGGTGGGTTAGGA-CGATAACTCTTTCTTTTC 378
* * * **** ** * * ** ** * * ** * ** *
consensus_9569#0 TGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGTCACGTCTTCATT- 538
consensus_9569#1 TCTGCACGACTCAGAATAGCTTCTTTATCAAGCATAGACTTTCTGG----GACTTGATTC 434
* * ** * * * * * * *** ** * ** ** * * *** ***
consensus_9569#0 GTTAAAGTTGTGCATTATATTCAGGACTTCTAGTCCTTTTTCCCGTCCCCATTTAGTTAG 598
consensus_9569#1 ATTCAGATCGAGAAT---ATCTAGGACATCCA-------TTGCAGTACCCATT-GTTTGA 483
** * * * * ** ** ***** ** * ** * ** ****** **
consensus_9569#0 TGAGTCCTGTCTATTAAAGTTTAGTTT-TTCCTAGACATTACATT 642
consensus_9569#1 AAAACAATGCAAAGAAAGGTGAAAATAACCCCTAGGT-------- 520
* ** * ** ** * * *****
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||