These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 642 fasta sequence [TTTATGGCATTTCGACGAAGTTTATGTATTTCTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAATATTTTTTATTG-A-AGCATATCCTTACTTACTTATTTACGCCTGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGCCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTAGCATATCGCTTTATAATGAGGTATAAGTTGAGATACTGCATTTGATTCAGTACATATTCCAAAAATGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGTCACGTCTTCATTGTTAAAGTTGTGCATTATATTCAGGACTTCTAGTCCTTTTTCCCGTCCCCATTTAGTTAGTGAGTCCTGTCTATTAAAGTTTAGTTTTTCCTAGACATTACATT] [+] EMBL CD090625 [TTTATGGCATTTCGTCGAAGTTTATGTATTTCTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAA ATTTTTT TTG A AGCATATCCTTACTTACTTATCTACGCCTGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCCGCCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGCCTCCATTCGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTT ] [+] EMBL CD090641 [ GACGAAGTTTATGTATTTCTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAATATTTTTTAATG A AGCATATCCTTACTTACTTATCTACGCCTGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGTCCTGGGCCTTCCTTTCTAGTTCTAACCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTAGCATATCGCTTTATAATGAGGTATAAGTTGAGATACTGCATTTGATTCAGTACATATTCCAAAAATGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGCCACGTCTTCATTGTTAAAGTTGCGCATTATATTCAGGACTTCTAGTC ] [+] EMBL CD090626 [ catGAAGTTTATGTATTTCTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAATATTTTTTATTG A AGCATATCCTTACTTACTTATTTACGCCTGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGCCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGNGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTATCATATCGCTTTATAATGACGTTTCAGTTGAGATACTGCATTCGATTCAGTACATATTCCAAAAATGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGTCACGTCTTCATTGTTAAAGTTGTGCCTTATACCCACGACCTCCAGTCCTCTTTCCCG CCCCATTTATCTAGCGAGTCCTGT TTTTAAAG CCAGTTTCTCCTACACCTTACA ] [+] EMBL CD090652 [ cccaccccATGTATTTCTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAATATTTTTTATTGTATATCATATCCTTACTTACTTATTTACGCCTGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGCCCCGCGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATCCAATATTACCATATCGCTCTATAATGAGGTATAAGCTGAGATACTGCATTTGAT ] [+] EMBL CD090647 [ CTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAATATTTTTTAATG A AGCATATCCTTACTTACTTATTTACGCCTGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGNCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGNTCATTCTTCTCATGTCTGTCTCCATTNGTCGGGGNAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGNGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGCGTNNTTCTTAAATCATACTATTCAATATTAGCATATCGCTTTATAATGAGGTATAAGCNGAGATACTGCATTTGATTCAGTACATATTCCAAAAATGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGTCACGTCTTCATTGTTAAAGTTGTGCATTATATTCAGGACTTCTAGT CTTTTTCCCGTCCCCATTTAGTTAGTGAGTCCTGTCTATNACAGTTTAGTTTTTTCTAGACATTACAT ] [+] EMBL CD090650 [ CTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTAAAAAATATTTTTTATTG A AGCATATCCTTACTTACTTATTTACGCCTGTTACTCCCAATGGAGCATAGGCCGTCGACCAGCATTCTCCAATCTACTCTGCCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTANCATATCGC ] [+] EMBL CD090636 [ CTTTATAACCCCTTACTGTAATTTATTGAAGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCTACATCTATAAAATATTTTTTAATG A AGCATATCCTTACTTACTTATCTACGCCCGTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGTCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTAGCATATCGCTTTATAATGAGGTATAAGTTGAGATACTGCATTTGATTCAGTACATATTCCAAAAATGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGTCACGTCTTCATTGTTAAAGTTGTGCATTATATNCAGGACTTCTAGTCCTTTTTCCCGTCCCCATTTA ] [-] EMBL CD090635 [ GTTACTCCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGTCCTGGGCCTTCCTTTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAATGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCATATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTAGCATATCGCTTTATAATGAGGTATAAGTTGAGATACTGCATTTGATTCTGTACATATTCCAAAAATGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGTCACGTCTTCATTGTTAAAGTTGTGCATTATATTCAGGACTTCTAGT CTTTTTCCCGTCCCCATTTAGTTAGTGAGTCCTGTATATTAGAGTTTAGTTTTTCCTAGACATTACATT] consensusID : consensus_9569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence [GCGCAAGCACTAAATTGGGGTGCAATCTGGGCCCTCCAAGATCTGTGATACCCTTCTGGAGTGTATTCAGGAACAGTGACATGCTTATTGTATCGTGCAAAATAATAATCTTTATTAGCCTCTGGATCAGTGCTTTCTCGTCTCCAATGATATAAGACTAGATTATCTTGTCTAGCGGAATTTGTAAAAGGTGTCCATTGCCAAGAACGAACTCGTCCTACACCAATCACAGCTTTGGGTTGTTTATAAAGAGGTGTATTATCAGTTGGCATAATCGGAGGAAGATTATTGTTAAGAGTGCTATGTAAGCCCCAAACTTCACGAGGAACATGACCGGGCCTTTTTGGTGGTGGGTTAGGACGATAACTCTTTCTTTTCTCTGCACGACTCAGAATAGCTTCTTTATCAAGCATAGACTTTCTGGGACTTGATTCATTCAGATCGAGAATATCTAGGACATCCATTGCAGTACCCATTGTTTGAAAAACAATGCAAAGAAAGGTGAAAATAACCCCTAGGT] [+] EMBL CD128504 [GCGCAAGCACTAAATTGGGGTGCAATCTGGGCCCTCCAAGATCTGTGATACCCTTCTGGAGTGTATTCAGGAACAGTGACATGCTTATTGTATCGTGCAAAATAATAATCTTTATTAGCCTCTGGATCAGTGCTTTCTCGTCTCCAATGATATAAGACTAGATTATCTTGTCTAGCGGAATTTGTAAAAGGTGTCCATTGCCAAGAACGAACTCGTCCTACACCAATCACAGCTTTGGGTTGTTTATAAAGAGGTGTATTATCAGTTGGCATAATCGGAGGAAGATTATTGTTAAGAGTGCTATGTAAGCCCCAAACTTCACGAGGAACATGACCGGGCCTTTTTGGTGGTGGGTTAGGACGATAACTCTTTCTTTTCTCTGCACGACTCAGAATAGCTTCTTTATCAAGCATAGACTTTCTGGGACTTGATTCATTCAGATCGAGAATATCTAGGACATCCATTGCAGTACCCATTGTTTGAAAAACAATGCAAAGAAAGGTGAA ] [-] EMBL AI976096 [ GTATTATCAGTTGGCATAATCGGAGGAAGATTATTGTTAAGAGTGCTATGTAAGCCCCAAACTTCACGAGGAACATGACCGGGCCTTTTTGGTGGTGGGTTAGGACGATAACTCTTTCTTTTCTCTGCACGACTCAGAATAGCTTCTTTATCAAGCATAGACTTTCTGGGACTTGATTCATTCAGATCGAGAATATCTAGGACATCCATTGCAGTACCCATTGTTTGAAAATCAATGCAAAGAAAGGTGAAAATAACCCCTAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9569#0 TTTATGGCATTTCGACGAAGTTTATGTATTTCTTTATAACCCCTTACTGTAATTTATTGA 60 consensus_9569#1 ------------------------------------------------------------ consensus_9569#0 AGTTATTAACTTGACTTAATGAAATTAAAGTGAAGATTCCTTTCTTTTAAAACTATCGCT 120 consensus_9569#1 --------GCGCAAGC--ACTAAATTGGGGTGCA-ATCTGGGCCCTCCAAGATCTGTGAT 49 * * * ***** *** * ** * * ** * * * consensus_9569#0 ACATCTATAAAATATTTTTTATTGAAGCATATCCTTACTTACTTATTTACGCCTGTTACT 180 consensus_9569#1 ACCCTTCTGGAGTGTATTCA---GGAACAGTGACATGCTTATTGTATCGTGCAAAATAAT 106 ** * * * * * ** * * ** * * **** * * ** ** * consensus_9569#0 CCCAATGGAGCATAGGCCGCCGACCAGCATTCTCCAATCTACTCTGCCCTGGGCCTTCCT 240 consensus_9569#1 ---AATCTTTATTAGCCTCTGGATCAGTGCTTTCTCGTCTCCAATGATATAAGACTAGAT 163 *** *** * ** *** * ** *** * ** * * ** * consensus_9569#0 TTCTAGTTCTACCCAATTGTTGTTCATTCTTCTCATGTCTGTCTCCATTTGTCGGTGTAA 300 consensus_9569#1 TATCTTGTCTAGCGGAAT-TTGTAAAAG------GTGTCCATTGCCA---------AGAA 207 * **** * * * **** * **** * *** ** consensus_9569#0 TGTGCTCTTTGATCTTCCTCTTTTCCTTTGGCCTTGAGGATTCCATGTGAGGGCTTGCAT 360 consensus_9569#1 CGAACTC----GTCCTACACCAATCA--CAGCTTTGGGTTGTTTATAAAGAGGTGTAT-T 260 * *** ** * * * ** ** *** * * ** ** * * consensus_9569#0 ATAACTAACTCTAATTTCTGAAGTGTTTTTCTTAAATCATACTATTCAATATTAGCATAT 420 consensus_9569#1 ATCAGTTGGCATAATCGGAGGAAGATTATTGTTAAGA-GTGCTATGTAAGCCCCAAACTT 319 ** * * **** * * ** ** **** * **** ** * * consensus_9569#0 CGCTTTATA-ATGAGGTATAAGTTGAGATACTGCATTTGATTCAGTACATATTCCAAAAA 479 consensus_9569#1 CACGAGGAACATGACCGGGCCTTTTTGGTGGTGGGTTAGGA-CGATAACTCTTTCTTTTC 378 * * * **** ** * * ** ** * * ** * ** * consensus_9569#0 TGTTCATAAAGTATGAAATTTACATTAACAGGGTCGGAATTATGAGTCACGTCTTCATT- 538 consensus_9569#1 TCTGCACGACTCAGAATAGCTTCTTTATCAAGCATAGACTTTCTGG----GACTTGATTC 434 * * ** * * * * * * *** ** * ** ** * * *** *** consensus_9569#0 GTTAAAGTTGTGCATTATATTCAGGACTTCTAGTCCTTTTTCCCGTCCCCATTTAGTTAG 598 consensus_9569#1 ATTCAGATCGAGAAT---ATCTAGGACATCCA-------TTGCAGTACCCATT-GTTTGA 483 ** * * * * ** ** ***** ** * ** * ** ****** ** consensus_9569#0 TGAGTCCTGTCTATTAAAGTTTAGTTT-TTCCTAGACATTACATT 642 consensus_9569#1 AAAACAATGCAAAGAAAGGTGAAAATAACCCCTAGGT-------- 520 * ** * ** ** * * ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||